RNA id: XM_021606624.2


Basic Information

Item Value
RNA id XM_021606624.2
length 5036
RNA type mRNA
GC content 0.53
exon number 14
gene id LOC110526033
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 60183215 ~ 60218672 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGTTCCATCAGTGCACGattcacataaaaaaaaataaaaaaaatccccgcAAAGAGCAAGAGTTGTTGCTAAGATGGCGGCGCGGTGGGGAGCAGGCGAGGCGATGTTAACTGCCTGCAACATGGATTTTTTCTCTACAAATACACTGGACGAGGCGGTGATCCTCCATGGGGGCCTGTCTAGTGACAGTCTGGAGCTGGAGACAGGAGAAGCTCTGGAGGCCCTGTGCTGTCTGGACCCCTCCATACTGTCCATATTTGAGGATACAACCACAGGAGAGAATAAAGTTGGACTTGATGAGGATAACGAGGCGACGCTGCTCACAGCTCTGACTGAGATCCTGGATAACGTGGACAACGAGAACCTGTCCCCCTTCGACACACTGCCAGACTCTGATTTACTGACTGGCCAGAAAGGCCGGGAACACTCTCCGCTGAGGAGACTGCTTTGCTTGTCCCACTCGTCTCCAGAGAGTGAGAGACCCTGCAACACGCGACAGTTCTCCACTGGGAAGAGTCTCCCCAGGACACAGGAGTCTGTCCAGAGGAGTGACGGAGAGGAAGAGGACACAGAGGCTTGTTCTCCCTCCCTGAGCCCAGACAGACAACCCTCGTCCCCAGAGCAAGAGCTCCTGACCTGGGGTGGCCTGCCTCTGGAGCAGcacatggatggagagagcatgtCAGTGAGTCTAGGAGAGCTGGTCAGACACATGCACCCctattgcatggcagtgtgcgtGGAGGATGAAGGGGAAGAACGGCTGCTGGCGGAGGAAGGGATACTGCTGGAAGTGGTCGAACATGGAGAGCATGGCGAGACTATATTTGCCATCCCAGATATGGGCATCCCTtatgctcatctctctctctccttgccggGAGTAGAAGACTCATTCAAAGCGGAGCAGAGGGTTCCAGATGAAATTTCTGAAGCGGATATGTTGGAGACGCCAGAGTCTGAGTCGGCGAATGATGTCGTAGTTGATGACGTAGCAAAGGTGGCTGGCCCTTCTGACCCTGCCGAGACCCTGAGGGCAAAAGCAAGTGGTGAGAATGTTATCTACAGGAGACCAAAGGAGGAGACTGTAGAAAGATGTCTGTCTCGAAGGAAAAAGAAACGGAAAAACAAAGTGAAGCGTTCACCTGCTGAGGTCACCCCTGAACCTGCCCAGGCAGAGGGCAGGGTCCTGAGGAGCGCGTCCCATAGGGGCGCCGCCCAGGAAACTTCGGCCCGGAAGCCCATCAAAGAGACGACCAGACCAGAGAAAAAGGACAAAGAGACGTTTTCTTCTGCCATATCTATGGCTGCCCCCGAAGCCCCAAAACAGAAGACGAGAGCAACACATGCTGGCGAAACACAACACGTACAGCGACAGAGCCATGTGGAAGTCACAACCTTAACACTATCCACACACCCCAGCGTTAAGGTCATCCCCGCCTCAGACCATGTGTTGAAGGTCATGGCCTCTGACCTGTTGCCAGTGACTATGACCCCAAAGAAACTCCCCCAAACAGCCACAGGCTGCGAGAAGCCTCAAAGCCTTCTAGCTTCTGCAGCTAACCCAACAGCCCCCCAGGCAATGACAATCAACCCTGCAGCACCCCAGGCGCTTAACCCAAGTGAACGACCTGTGTCAGTGGCCCCCCAGGCAATAATGCAGTCCAACAGTGCCTCTCTAGCGGCCCCCCAGGTGATCCCCAAGCCCATTAAGGCCTCCCAGGCTATTGAGCCCAAGCCTAAGCCCCTGTCCCTCCAGCAGTACCGGCTGCTGCGGCAGCAGAAGAAACCGGCCCCCTTAGAGAGACCAGAGGACCAGAGCACCAAGTGGCCCAGCCTCCCTGATGCCCCTACCGAGTTGCCCCCTATCCCCTGCCTCCCCATCCCCTCTTCCAGAGACCCTCGTcgcccccacccctccccaggGAAAACTGAGGTGGAGGTGAAAGCGGCCTGGCAGCCCATGGGACCAGGAGCACCTCCTACACCTGAAGCTCTGCTTGTGCCTCCTGCTTACATGCTGGCCTCCAAATCATCTTCCCCAAGCAAGGCTTCTAGTGCAAATGCATCCCCTATAACCCCTCCCCAGCAAGCGGCTGTTCCTACTCAACAGCCAGCTAAAGCTAGCCAATCCCCCATCTCCGTTGTGCCTTCATCCAGTACTGTGAGTGTAGTACCCCCACCACCCCAGAACCCTTTTGTGAAGCGTAATATACCCCAGGCCCCCCATCCTGCACTCACGAACCCCCTGCTCCAGTCCCAGCTACCCTCCAAGACTGTGGTCCTTATCAAATCTCAGAGCTCCAGTGGAGCCTCTTCTAAAACCACTACAGCTGCCAACAGGCCCGCCCTAATTGCTACTATAGCCCAAAAACCAACCCCTGTCGCTGGTGCTCTACTTGAGAAAACTTTCAACTGCACCACCAACGCTGCTGCTGTTTCTGTTCAGAAACCTACCCCTCCTTTGAAGGTGGCTACTACTCTCCAGAAGGGAGTAGTAGTTACTCTGCCCCGGCCTAAGATGCCTGAGCTGCCTACAGTCACTCCTGggtctaccccagccaaaccctccaccACCCAGTCCTCCAAACCTGCAGTGAGGTGTACTACAGCCCAGGAGGCCCCCAAAGCCAAGAGCCCTACTCAGGAGCTGATAGAGGCATTCACCAGTGAAATTGGTATTGAAGCTGCTGACCTCACCAGCCTGCTGGAGCAGTTTGAAGAGACTCAAGctAAAGAGGAGCAGTATGTTCTGGAGGTCTCTGGTAGAGCAGCAGCTGTAGGAAACTCTAGTGTGGAGCGGCCATGTGACAGGACAGTTGTGGAGAGAGTCGGCACACATGACCTGGCAAGCACTGCAGGTCTGACCCCTCCAGCTACTCCTCCTCACCAGATGTGGAAGCCCTTGGTCCCTGTGGCACTCCTTGGGAAGAACCGAGTGGCTGAGACCCCCAAACCATCGCCCTCCAAGGCCATCCAGATCAACGCGCGGCCCCTGCCCGCCAACAAGCTCCGAAGCAAGCCTCCCAGCCCCCCTATAACTCCCACCCCCAACACGGTGGCTCTCACCCTGGCTTTCTCAGACCACGACTACTGCCTCCCTCAGAAGGAGCCTGTGGCTATTGCTGAAGAGCCAGGCAAGCGCTGGAATGTCAAACAGCAAGCAGCCATCACCATCAGGACCATCGAGCCGCTTGGCAGCACCACTACCAGGGCACCCCAGAGGATCCCTGCCCCCTCACTCCAGACCCTCATTCCTGCCCTGTGTACGAAGACCCAGCAGGCTCCCCTACCCCTGGATGTAAGGACTGATAGGACTAGCTCTGTGCTGGGTACCCCTGACGCTTCTCCCACCAGGCAGGAGCAACAGGTTGGTGCCCTGGAGATGAGTCCCAAGAAAGGGAGATCCTACCGGGGCCACAACATTACCTGCTCCCCCAGCCCCAGGGAAGAAAAGGGAGGACGCGAGAGGAAAAGGAGAATCCACCATTCCTCCAGCCCTTGTTCTACTGACTCGGAGTCTGACTTTCACTCCTCTTCTTCTCAGTCTAGATCTTGCTCTCCACCCAGGAAGAGgtaCAGGCCTCGTCACTCTAAGAGCAGCTCCAGTTCCTCGTCTTGCTCCTCTCGTTCCTCCTCTCGTTCCTCCTCtcgttcctcctctccttccgtGTCCCGTTCTCCTCCCAGGCGGCGGTATTCCTACTCCTCTTCCCGATCTGGATCCTGGAGTAGGTCCCGTTCCCGCTCTCCCCACAGACGGGCATGGCGCAGAGGCAGTAGTCCACGCAGaCCAGGCTACCGGCCTGAATCTAGAGAAAACAGCCAGGAGGTGAAGAGACTCAAAGAAAAAGCGATCGAGGAGCGTAGGGTTGTTTATGTAGGGCGAATCCGGGGGACAATGACTCGGAAAGAGCTGAGGGAACGCTTCTCTTTGTATGGAGAGATTGAGGAGGTCACTCTACACTTTAGAGACCATGGGGATAACTATGGGTTTGTGACGTACTACGATACGAAGGATGCGTTCACAGCCATCGAGAATGGTGGCAAACTCCGAAAGCCTGACGAACTCCCCTTTGACCTTTGCTTTGGGGGAAGGAGACAGTTCTGCAAGGCCAGCTACGCTGATCTAGaTTCTAACCGCGAGTATGACCCGTCGCCTGCAAAGGGCAAGTTTGATGTACTTGACTTTGACACTTTACTGAAGCAGGCCCAGAAAGGTCTGAAGAGGTAACAGAGGTCAGCCCACTGGGGGCGCCATGCTAAGACTTACCTCAGAGCCGCGGCAGGCTCCTCCCACCTTCAACTCTGCCTTCGCCTTGACCTAGGGGTGGATCGCAACCAATGGTCAAAACGTTAGCCAGCTGACATCGATAAACATACAGATGTAGCTCTTTTCTGGTTCATAAAAGCTACAGTTTAAAGCTGCAATCTGGAAAATAACCTTAGATTTTGGGTTATAAGAGTAAGGCATTGTAAGAAGCTCATAGGGCATTTAAGTTACGTTCAAGTCGATGGAATCAATGTCATCAATTGAATCAAATGCATCAGAATCTATCATTAATTGAAAATGGTTGGATGGCAGGAAGTCTAGCTTTTTATATGGATTGTTTTAAGTTTTAAATCATTTATCCCATGTTCATTTCAAGCTTGTCTTTATGAACTCAAATGTTATTTCTGAATAATTTGAAGTGACAGCTGGCTAACGGGTTGTCCTGCATTGTGACAGAGCTACCGGTCTTTATTTAGGtaggtttttttttgtgtgtttttgtttctgCAAGCTTACACCTTCTATTGAAGTGAAGATTTGTATGAAAAGATTaaaagcaaaaaaagaaatgaaaTGGAAAACTTTTTAACCGGAAAGAATTTATTTAAATGTGTAATCAGATTTTCCACAATATATGGGgggaaaaaatatgttttagaaaTGGGGATACTAAAGTGAATATTCCCTGATATTTGGGAGAAAGTGGAACTACATTGCTGAAATGTACCGCAAACCTAAATAAACCAAACTTTTTAAACTGG

Function

GO: NA

KEGG:

id description
K17963 PPRC1, PRC; peroxisome proliferator-activated receptor gamma coactivator-related protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73455 lncRNA upstream 2966 60179896 ~ 60180249 (+) True G66310
TU73453 lncRNA upstream 6908 60175978 ~ 60176307 (+) True G66308
TU73410 lncRNA upstream 42006 60130319 ~ 60141209 (+) True G66269
TU73409 lncRNA upstream 49241 60130319 ~ 60133974 (+) False G66269
TU73365 lncRNA upstream 92185 60027237 ~ 60091030 (+) True G66225
TU73519 lncRNA downstream 92834 60311506 ~ 60312165 (+) True G66370
TU73521 lncRNA downstream 97633 60316305 ~ 60316536 (+) True G66372
TU73524 lncRNA downstream 101921 60320593 ~ 60320833 (+) True G66375
TU73588 lncRNA downstream 276061 60494733 ~ 60495095 (+) True G66435
TU73639 lncRNA downstream 286910 60505582 ~ 60505809 (+) True G66475
XM_036981233.1 mRNA upstream 164520 59999410 ~ 60018695 (+) False LOC110525930
XM_036981240.1 mRNA upstream 164520 59999778 ~ 60018695 (+) False LOC110525930
XM_036981226.1 mRNA upstream 164520 60000702 ~ 60018695 (+) False LOC110525930
XM_036981245.1 mRNA upstream 164520 60000704 ~ 60018695 (+) True LOC110525930
XM_021606417.2 mRNA upstream 189564 59969515 ~ 59993651 (+) False si:ch211-223a10.1
XM_036981447.1 mRNA downstream 10799 60229471 ~ 60264209 (+) False LOC110526041
XM_021606634.2 mRNA downstream 10800 60229472 ~ 60264209 (+) False LOC110526041
XM_036981456.1 mRNA downstream 12571 60231243 ~ 60264209 (+) True LOC110526041
XM_036981500.1 mRNA downstream 82821 60301493 ~ 60370189 (+) False LOC110526060
XM_036981519.1 mRNA downstream 87097 60305769 ~ 60308241 (+) True LOC110526075
TU73321 other upstream 241151 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 858086 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 1482836 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 1517309 58665334 ~ 58665906 (+) True G64315
TU71238 other upstream 1595630 58586858 ~ 58587585 (+) True G64292
TU75047 other downstream 1096202 61314874 ~ 61315252 (+) True G67806
TU75188 other downstream 1511093 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 3056291 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 4590917 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 5697063 65915735 ~ 65922285 (+) False LOC110527164

Expression Profile