RNA id: XM_036981447.1


Basic Information

Item Value
RNA id XM_036981447.1
length 5163
RNA type mRNA
GC content 0.50
exon number 19
gene id LOC110526041
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 60229471 ~ 60264209 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATGTTCCAAGGCGAATAGTGTTTTGCCACTGTCTGGTGGCGACTAGTTTGATCCAGTCTCCTGAACATGCGCAGTCGGTGTAAACAGGAAGAATCTGCGGAAACTAGGGCTAATCTAAAAAGACTAATCGAGATATTCACAGGAACAAATATATACTTTATTAATCGTAAATCTACGAGAACAGACCGTCTGTAGAAATGGTTCAGAAAGACAAGCCGGTGGTGGATACGTCTCAAGCGGAGACTGAAACGAGCCCATGTTCGGGGCCATCTAAGGCTGGTTCCGAAGCATCTGGCCTCGTGGAAGAACCGATAAACATAGAGGTGGAGCTGTCGGGCCGCAGGAAATTCATCAGTGGAGTCGTGGAGGGCTTCTACGGCCGGCCATGGACAATGGAACAAAGGAAAGAGCTGTTCAGGAGACAGCAGAAATGGGGCTTGAACACATACCTCTACGCTCCTAAAGATGACTACAAGCACAGGATGTTCTGGAGAGAGATGTACTCAGTAGAAGAAGCAGAACAGCTGATTACCCTGATCAGTGCTGCAAAGGAGTATGGGATTGAGTTCATCTATGCCATCTCCCCGGGCCTCGACATCACCTTCTCTAACCAGAAAGAAGTGTCCACACTCAAAAGGAAACTCGACCAGGTGACTCACTTCGGCTGCAAGTCATTTGCCTTACTGTTTGACGACATTGACCACAACATGTGCCCCGCCGACAAGGAAGTGTTCAGCTCCTTCGCCCATGCCCAGGTGTCCATCACCAATGAGATCTTTCAGTACCTGGGAGAGCCTGAGACCTTTCTCTTCTGCCCCACAgAGTACTGTGGAACGTTCTGCTACCCCAATGTTGCCCAGTCCCCCTACCTGCACACAGTGGGAGAGAAGCTGCTACCTGGCATTGAAGTGCTGTGGACAGGTCCTAAGGTGGTATCGAAAGACATCACAGTGGAATCAATAGAGGAGGTCTCTAAGATCCTGAAGAGAGCTCCGGTAATCTGGGACAACATCCATGCCAACGACTACGACCAGAAGCGTCTGTTCCTGGGGCCGTACAAGGGGCGCTCCACGGAGCTCATCCCCCGCCTAAAGGGGGTTCTCACCAACCCCAACTGTGAGTTCGAGTCCAACTTCGTAGCCATCCACACCCTGGCCACCTGGTACAAGTCCAACATGAACGGAGTGCGCAAGGATGTCGCCATGACGGATGGAGAGGACAGTACTGTATCTATCCAGATCAAGCTGGAAAATGAGGGCAGTGATGAGGAGTTGGAGACAGACATGTTGTACAGCCCTCAGCTCGCCCTGAAACTGGCCCTCACAGAGTGGCTGGGGGAGTTTTTAGTGCCTCACCAGTACAACAGTCGCCAGGTAACCCATAGCGGAGCTAAGAGTTCAGCTATTAACGTGTCATCACTAGGCGCCTCCTCCCTCTGCGCTGGTACGACAGTCACTACAGTGTTCCGACAGCCCATCATGGCCCCCACAGGTGCCCCCgaccccaataaccaccccatgGCCAAGAGTCTGCAACAACAAGAGGTGGATGTTGAGAAGAAGGAGTCTGACGAAGAGCCGATGGAGATGGTTGTGGAGAAACCATATGAGACGGAGCCAGAGCCAGACCCTGTAGCGGAGGTTGAAACTGAGACCAAGAACAGCCTGGTCCTTTTAGACAAGATGGTGGAGGATCTGAAGCCCATGGACACAGACCGGGAGGTTCTAGTTCCTGATTCCAAGTCTCCAGAGGAGGACATTGACATGGCCCCCATGCAGACAGACGAACAGCTCAAACAGgatgtttttgtgcttggTCCCAATGAGAAGGTATTGTACACTGCAGAGTCTCTTTCTTTGGAGGACCTGATCCTGCTGGCTGAGCTCTTCTACCTGCCCTATGAGTACGGACCCAAGGCCCTACACATGCTCAAGGAGTTCAATTGGCTCCGGGCTAACTGCAGCACCGTCGGTGTCGACTGCAAGGGCAAGGAGCCAGAGaagGTAGTGGAGTGGCAGTCCCGGGCGGAGAGGTTTGAGGAGATGTGTTGCTCGGTCATCCAGATGTTCACCAGGCTGTCTAACTCAGCCAACCGCACCATCCTCTATGACCTCTACCCCTACATCTGGGACATCAAGAGCATCATGTCCATGGTCAAGTCCTTTGTCCAGTGGCTAGGGTGCCGTAGTCAGGCCACTGCACAGTTCCTTAGTGGAGACCAAGAGCCTTGGGCCTTTAGGGGCGGTCTAGCAGGAGAGTTCCAGAGATTTTTGCCGATTGACGGGGCAAACGATCTTTTCTTCCAGCCTCCCCCCGCACTGCCAACATCCAAAATCTATTCCATCAGGCCCTGCTATCCTAAAGATGAGcaTGCAGTGTATAAGATCTGCAGAGAGATGTACTCTGAAGGAGTGGAGGAACTGCCCTTCGGTGGAGAGGATCCAGACCTCATAGGAGACAGGTTAGTAGGAGGGTTCCTGAACCTGAGTCCAGACTATGGGTTTGTCCTGGAGGACGAGGAGGGGATCTGTGGTTACGCTCTGGGCACCGTGGACGTCAAGCCCTTCGTCAAGAAGTGTAAGATGAGCTGGATCCCCTCCATGCAGGAGAAATACAACAAGCCTGACTGCCAGAAGGACCTCTCTGATGCTGAGAAGATGATGTTGAGTttccatgaggaggaggagggcctccCAGAGTCGTTCCTCTCCAACTTCCCTTCCCTCATTAAGATGGACATCCATGCCAAGGTCATCGATCCCAGCGTGGCCAAGAGCATGATGGGATGCCTGCTTTCCTGCCTCAAGGCCAATGgttccATCGGTGCATTCTGTGAGGTGCGTCAGGCGGACAAGAGGATGATAGACTTCTACAGTAAGCTGGGCTGCTTCGAGGTTGCCAAGATGGAGGGCTTCCCCAAAAACATCATAATCATGGGCCGCAGCCTCTGAGGACAACGACGACATCACGGGACGCAGCTCCTGAGACAGCCCGGCGAGCCAAGCAACCACGGAGCTGTGTAGAGCGCTTCAGTCATCTGGGCCTAAGGATAACTGTCTGTTACTTTTACAAACCTACCGGTACTTGACGATTTTACACTTCAACCACCTGGACTAGATAAGGCTAGAGGCATCCCTGTTTTTAGATAGTGATCAGAAACAAAGCGGCTTGTACAGATTCACTGTGCTGCCACTAGAGGCCCAGAGCTCTGCCGGAATGAAACAGAATCCAAAACTGTAAGAGCCAAAGTAGTCGTCTGCAGCCCTGTAAAGCCGTGTGTGTTTATGGTGGACGGTTTCCTTCTTGTCATTGGTGTCCAGAGTGGAGTGGCAGTGACTGATCCCCATGCGGCTCCATGAAGTAGGAGCTGGTCAGGTGCCATCAACTCCCATTAGCCTTtcagaccatgtgacctgactgTCAGCAGCCGAATGGGCGTCTGTGCCTGTCTCTCACAGACAGTCGGGGGGTGTATTTAGATACTGCTGCATCTCAAATTGCGCTCTCTTCTCAATGTAACACGTTATTTTTGTCTAGTCGAAGGTAGTGCAGTGTATAGAGTATAGGGAGTGATTTGCGACTTGGCCGTATATGCTGACATTGCACTTTGGTATAGGCCTAGCTGACGGGACGGGGGGGGGGATTAGGGAAAAGGGGCCTTTGAGCAGGTGGTCCCTGTAGCTTACAGAGTAAAGAGCGGTTTATGCTTCCACCTATACTGTAGTTTAACTCCCGAGTGAAAAAAACATTTGTCTCTTTGTGGTGTGTTACAGGTTCCTCAATAGTTTACTTAAACTTAAGTGACTTACATGCAGAGGAAAGCATACGCTTGAGTGTTCAAGGAGACGTACGGAGACTTTAGTAGCGAGGGAGTTATTTCCTGGAAACCCACCGGAGTAGAAATTAATAACCTCGAAGAGAGGAAGATGTGGAATTGGCCACGTGTGTTTCCACTCACTAAAAACATGGTTCTCAGTCTAGTCCCttaacccttttttttttttttttttacagtgctaTTTTTATGTTTATGTATTGCCTTTCAATAGGACTTTTGTACCTGTGGAGATCTCCAAGGGGCCTATTGCACTGTACTGTAGATCGCCGATGATTACCATGCACTCTTAACTACTGTCAATCCACCTGACAAATACATAAGGGGACATGATGGGATGCGTTCATTTTAGCTTGCCCGGTTGCCCTTGGATGGTCTAAAATGGGCAAACTCCACCCTCCCGGTGCACGCTAAAACGAACGCGCCTCGCCTCAAAAGGTGGGCCATCGGCTCGAAAACGTCTCTCAATATTTTTTGGGTCACCAATCCAGTGCTCTGGCCCTTAAACCAAGAGAGACGTTTTCGAATTGTGAAGATGTGACTGTTTAGACGCTTCAGCGCTCCTTCTGTAATGCAGCTGCTCTCGTTCTCGACTTCACGGGGCTCGGCGAGGAACATGTACCACTAACCAGCTGCTTATCCGGGAGGACAGAACGTTCAGGTAGAAAGATACTATGTAGAACAGGTGGGATTCCATGCCAAGCAGAATGAGGAACCATGTCGGCTGTGTACGCCACATTTCCATCTGCGGCGTCATACGTTGCACGCACTTGAATGTCGAGCTACTGAGCGGCTGTTCTTCTCCTGGTTGGGACACTACCTACATCGACATGTCAATTCAAATATGCTTTTTAAAGGAATACCTCGTTATCTGATTTGTCTTCTGCCAGCCTGGATGTTTATAAATGAGTCTGAACGTTGAGGTAGTTAGATTGCAGTCCTTTTAGTCTGCTTTATTCATCCAACTCATCGCCCTCTGGACTAGTATTCTGTGGTGGACAAGTACGTTTCCCAGAGAGAATAGCAACATGTATTCTAGTTCTCCACTGGTATTAAATGATTTACTTTTCCTTTAGtttgtgtgttatatatataaaCAGACATTTTGTCATTGCTTGTGCTATTGTGAACTTTTGCTTTTTTTCCCCCCTGCATCTGCTGATTTTATGTTTAGCGGCAATTTGAAAGGGCTTCAATTATAGGCCTACATTGATGATACATACattgttcattttttttgttggtgGGGAGGAGTTTATTGATTAAAATGTACACTTTGTATGTGAAAGGAAAATTGTTGTTAATAAATATTAACTCATGGAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73455 lncRNA upstream 49222 60179896 ~ 60180249 (+) True G66310
TU73453 lncRNA upstream 53164 60175978 ~ 60176307 (+) True G66308
TU73410 lncRNA upstream 88262 60130319 ~ 60141209 (+) True G66269
TU73409 lncRNA upstream 95497 60130319 ~ 60133974 (+) False G66269
TU73365 lncRNA upstream 138441 60027237 ~ 60091030 (+) True G66225
TU73519 lncRNA downstream 47297 60311506 ~ 60312165 (+) True G66370
TU73521 lncRNA downstream 52096 60316305 ~ 60316536 (+) True G66372
TU73524 lncRNA downstream 56384 60320593 ~ 60320833 (+) True G66375
TU73588 lncRNA downstream 230524 60494733 ~ 60495095 (+) True G66435
TU73639 lncRNA downstream 241373 60505582 ~ 60505809 (+) True G66475
XM_021606624.2 mRNA upstream 10799 60183215 ~ 60218672 (+) True LOC110526033
XR_005053649.1 mRNA upstream 12209 60217121 ~ 60217262 (+) True LOC118966766
XM_036981233.1 mRNA upstream 210776 59999410 ~ 60018695 (+) False LOC110525930
XM_036981240.1 mRNA upstream 210776 59999778 ~ 60018695 (+) False LOC110525930
XM_036981226.1 mRNA upstream 210776 60000702 ~ 60018695 (+) False LOC110525930
XM_036981500.1 mRNA downstream 37284 60301493 ~ 60370189 (+) False LOC110526060
XM_036981519.1 mRNA downstream 41560 60305769 ~ 60308241 (+) True LOC110526075
XM_021606664.2 mRNA downstream 85183 60349392 ~ 60370189 (+) False LOC110526060
XM_036981491.1 mRNA downstream 85183 60349392 ~ 60370189 (+) True LOC110526060
XM_021599218.2 mRNA downstream 109843 60374052 ~ 60391626 (+) True LOC110521558
TU73321 other upstream 287407 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 904342 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 1529092 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 1563565 58665334 ~ 58665906 (+) True G64315
TU71238 other upstream 1641886 58586858 ~ 58587585 (+) True G64292
TU75047 other downstream 1050665 61314874 ~ 61315252 (+) True G67806
TU75188 other downstream 1465556 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 3010754 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 4545380 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 5651526 65915735 ~ 65922285 (+) False LOC110527164

Expression Profile