RNA id: XM_036981519.1


Basic Information

Item Value
RNA id XM_036981519.1
length 2473
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC110526075
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 60305769 ~ 60308241 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgattcttcacaaaaaaatatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtacttacccATTGAGCATAACATAGTTCATTGAGAAGATATAGTCACCATCTTATCAGGATCTATGTACTTAACTGTTGTTACCTGCAGCCTAGATACTGTAACAAAGAGTCAGGTGCCACAAGTTGTTCCACAAGTTGTGTCTGAATGTAGGGGAGGTATGGCAGACCCTTTCTATACTTAATGGAAGTGCATTTCATTTTCTGACAAGAGAACACCAAACAACACTGGCTTTGCGAGTTTCACTTCATATTCCTTCAGGTGAGCAACACGTTGTTGATTTCCTTATGAGCTTGTGCAAGTTGCCGAGTCTTTTCACAACTTTTTAGATTTAATGACAGTCAGCCTATCTGTTTCTTTTTTCAGAGTTTATTGGAAATGGGAGCCAGTTACAGTGTTGACTTGTGAAAGTTATTTTCATATACCTTTTTAATGTGAGTACTTTTCACCTCTTTGTTTTGTATTTGCTGTTAATTTCAGCAGAGTGAGATCCCTGTATGGACAAAGACAACCCTGACCTGCCTCTGAGGTCAGGGGACCTTCTACCATTCTCTCCACACCCACCTGTCTCTTAGAACATGAACTCTCACTACTTTTACACATACACATCACCTCGACCTGCATCTACACACCACTTTTACAGATCGATGTGTCCCACCGTCATCACCCCACCTATGCAGTGGCCCAACAACTACAGTCTCTACCCTCCATGTATCCCCACCAAGTATCAATTCCCCTTAAACTTGGTCTCCAGGAGCACTAGGGGATTCCAGGGATCTGATCCCAGCGCGTTCCACCACTATCATCAAACTTCTCCCCTGCCCTGGTGCAACTATAGACTTGTGTCTAACCCTTACTGGCACTACCACCAGCGCCTGTATGCCAATCTTTCTGCTCCAGTGGCTCCTGTGGCCCCTACTCCAACCAGGCCCCAGAGGTTCCAGAACCAGGGAGGGACCTGGCCCGAGGGCTTCACCCTGAGAGGAGAGCTTCGCTGGGGCAGGCTGGAGAGGGTGTATGGCCCCCGCAGGGAGCTGCCTGAGTTTGTGAGGCAGGACCTGCGGAGAGTGTACGGTACCTATCCCCGGACGGATGTTAGTATCACCTACCAGGGAGGGGAGTACGTGGTGCGAGGGGACACCCATGTCGGGGAACAGGAGtacagagtggagaggaggatagTGAGGCAGCAGGAGAGTCCTGAGGGGGAAAGCATGAGTGAGGtagtagagaagaggaggagaaagatgaGATGATTGTAATGGAGGTATGGCTAATAAATGCCAACTTTGTTGACATatgaaaatgtatttacataAATGTGATGATTTTTCCCATAAGCATTGAACAAAAGTATAACTGTTATATAGTAGTCGCTGCATATTAGTAAATGTTAATAGTAGAAATGCTATTGATAAATATTCtacataaaattgtatttgtcacatgctgaatacaacaggtttagtagaccttactatgaaatgcttacttacaagcccttaaccaacaatgcagttttaagaaaatacaacaaCAGCAAAAAGTAAGAGATgagaaacaaataattaaagcgcAAACTCCAGATAAGTAGCATTTGACTGCTTTTGTATTAAACGTATTTGTTAATATTCTCCATCTCATTATATGGCGCTACCTCAGGCAACTACAATGCTGGAGTCATTCTGGTCTAGTGTTTTCATTAGGTGGTGTGCTACTGTGTAATACTATGATTTTCAGTATCAAGGTTCCTGTAACATTAGCATTAACAAGTTTGCTTCAGGAAAGTGCTTTCCCACTCTTGTTATAAACTCCTGTCATTTGCCTCTCATCTCTTACTGAAAAACCCATGTTAAGCAGTTAAAACTTCTCTCATAACATGCTGATGTTCTATCCATTGTCTATCATATTAGTCATTTCTCACCTCTTATACTATAACCCCGTGTCGTATTGTATCAAACCCGGTCCAATCTCTTGTATCTCATCACTATTGTCACAGTAGACTTTGTCCATcagcatagaaatataattactagaatggACATTCTCATTCAAGTCAACTGGTAACTCTGACAAGTATGACTAGTcattctgtttctgtctgtccgaCCAGTCATTGACGTTTATGGACCCTGCTcttctctctgtcgtctccgtgACTCCAGGTTCTATGGAACAGGCGTTTGGGTCTGAGTCACCTCTCGCAGTATAGAGTGATAAGACATAGCTGTGGCCAGGGTGTGTGGGTTGGGTATGCTGCATTCGATTGCTTCACTTTTGAATGTTCCTTGTACTGCACAATTTCCAGTAATATAGATGTGCTTGAGCACACATCCCGTTTCTCTATAAATAAGTGTCACATATGATTTTACAAAACATGGATGTCTGACTGTTATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73455 lncRNA upstream 125520 60179896 ~ 60180249 (+) True G66310
TU73453 lncRNA upstream 129462 60175978 ~ 60176307 (+) True G66308
TU73410 lncRNA upstream 164560 60130319 ~ 60141209 (+) True G66269
TU73409 lncRNA upstream 171795 60130319 ~ 60133974 (+) False G66269
TU73365 lncRNA upstream 214739 60027237 ~ 60091030 (+) True G66225
TU73519 lncRNA downstream 3265 60311506 ~ 60312165 (+) True G66370
TU73521 lncRNA downstream 8064 60316305 ~ 60316536 (+) True G66372
TU73524 lncRNA downstream 12352 60320593 ~ 60320833 (+) True G66375
TU73588 lncRNA downstream 186492 60494733 ~ 60495095 (+) True G66435
TU73639 lncRNA downstream 197341 60505582 ~ 60505809 (+) True G66475
XM_036981447.1 mRNA upstream 41560 60229471 ~ 60264209 (+) False LOC110526041
XM_021606634.2 mRNA upstream 41560 60229472 ~ 60264209 (+) False LOC110526041
XM_036981456.1 mRNA upstream 41560 60231243 ~ 60264209 (+) True LOC110526041
XM_021606624.2 mRNA upstream 87097 60183215 ~ 60218672 (+) True LOC110526033
XM_021606664.2 mRNA downstream 41151 60349392 ~ 60370189 (+) False LOC110526060
XM_036981491.1 mRNA downstream 41151 60349392 ~ 60370189 (+) True LOC110526060
XM_021599218.2 mRNA downstream 65811 60374052 ~ 60391626 (+) True LOC110521558
XM_021606709.2 mRNA downstream 94840 60403081 ~ 60427711 (+) True rrp12
XM_021606732.2 mRNA downstream 188729 60496970 ~ 60501618 (+) False prdm8
TU73321 other upstream 363705 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 980640 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 1605390 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 1639863 58665334 ~ 58665906 (+) True G64315
TU71238 other upstream 1718184 58586858 ~ 58587585 (+) True G64292
TU75047 other downstream 1006633 61314874 ~ 61315252 (+) True G67806
TU75188 other downstream 1421524 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 2966722 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 4501348 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 5607494 65915735 ~ 65922285 (+) False LOC110527164

Expression Profile