RNA id: XR_002473875.2



Basic Information


Item Value
RNA id XR_002473875.2
length 1098
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC110526081
representative False

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 60342589 ~ 60349309 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cccctgaacaaggcagttaacccactttttaaatataatttcagTTGTTTGAGAAGACAAAaatcaccaggaaatcagctcaaaATTATTTTAATTTAGAAAATCTGTAACCAAGTAATCACACGCATAAATAGAGGCATGTGATTTTTATCAACGTAATCAAGGTTTAGTATATATGTTTGGGATtattgcggtcaatttgcagtgtactaATGATTCATCCTGATGAGCCCTTCACAGCTAGACAAATTTCAAATTCTCGCTGAAGTGGTTGGACACCAATATCGGGACATCACTGTGTACCTCGTCAGAATGCCTTCGGGAACCACCTTCTTGCACAGACTGAGAAGGATGTGAAGGTTTTTGACGAGgagaaacagaaggagagctACCGGGGGAGAATCAAGAAGGGGAAGTAAAGAAGGGCAAGTACTTTGACATCTGGGCAAATTACTTGGGTTTGGAAGAAGGACGAAAGGAAGGCAAGACTTGGGGGAACCTCGCTGCTTTTTCGCTCCTAGCTGGAGTCACCATCCGTTAAGGGTTACCTCGGTGGAAGCTAACAACCTTCTCCAGTTGGACGGTCGACCACCGAAAGCCCTGATGCCCTGCACTTCAGTGAAGCCCATTAGACAAAGACCATCGACTGTCCGAGCACCCCAGGAGGTATCCCATCCACCAGAGCCAGTGAGTTCAGATCAGTCTGGTTCTGAGTCAGAAGGGTACCAGCCTGATGTCCTCCATTACCAACCACTCCAACTTTTCATGACATCTGCTACAGCTACTGTTGTCGTCATTATCTGCTAAGAAAGTTTTCGTGCTCTATCATGCTGGGCACATATGTGCGATACACAGATTTAACTAACTAAAAACACTAGCACTGCAAACACCACTGAGACTGGCTGCCTGTCGTGAACAAGTGACAGGCAGAACCTCCCACCCACACAGCAACCACCTCCTTTATATTCCACACACCAGAATTCTGTATTTTAGTTTTTGATTGCCATGAGTGTACAAAAAATCTGTGAAAAATATTAGTGCCACAACTGTACCAAAAGAATATCAATGTTTTATGTATTAAAATCTTTAATATTGCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU74188 lncRNA downstream 26349 60316038 ~ 60316240 (-) True G66969
TU74185 lncRNA downstream 29533 60312810 ~ 60313056 (-) True G66966
TU74186 lncRNA downstream 33686 60308645 ~ 60308903 (-) True G66967
TU74139 lncRNA downstream 78388 60261877 ~ 60264201 (-) True G66922
TU74117 lncRNA downstream 126056 60207483 ~ 60216533 (-) True G66905
TU74231 lncRNA upstream 20609 60369797 ~ 60371381 (-) True G67011
TU74278 lncRNA upstream 68106 60417294 ~ 60421548 (-) True G67056
TU74316 lncRNA upstream 147891 60497079 ~ 60497308 (-) True G67094
TU74317 lncRNA upstream 149305 60498493 ~ 60498701 (-) True G67095
TU74318 lncRNA upstream 149923 60499111 ~ 60499334 (-) True G67096
LOC110532500 mRNA downstream 6368 60334984 ~ 60336221 (-) True LOC110532500
XM_021606648.2 mRNA downstream 41276 60281672 ~ 60301313 (-) False LOC110526047
XM_021606656.2 mRNA downstream 41276 60281672 ~ 60301313 (-) True LOC110526047
XM_036981324.1 mRNA downstream 170047 60130315 ~ 60172542 (-) False LOC110525977
XM_021606720.2 mRNA upstream 80996 60430184 ~ 60495300 (-) False LOC110526097
XM_036981581.1 mRNA upstream 176231 60525419 ~ 60538921 (-) True gdf10a
XM_036981604.1 mRNA upstream 311279 60660467 ~ 60690036 (-) False LOC110519525
XM_036981596.1 mRNA upstream 311279 60660467 ~ 60695525 (-) True LOC110519525
XM_036989748.1 mRNA upstream 345947 60695135 ~ 60707046 (-) True LOC110532522
TU72370 other downstream 1187444 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 1556972 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 2944101 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 3279741 57035667 ~ 57062848 (-) False G63093
TU74240 other upstream 81019 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 1333090 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 1632543 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 2062334 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 2928020 63277208 ~ 63277752 (-) True G70013

Expression Profile