RNA id: XM_021599218.2


Basic Information

Item Value
RNA id XM_021599218.2
length 1765
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110521558
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 60374052 ~ 60391626 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACTTTGTTTTCATTGGCTCCATTCGCTGGTAGAAGTCTCTGAAAGGCTGTTTTCTCTGATGCTGAGTCGGTGTCGTGTTTGATTTAAACAACAAGTCTCCAGAACTAAGAGATCAAGTctctgggagagagaaagagaagaacatGGGAGTCGCTAACTCCAGGGATCACCATCTCTACCACCCCTCACAGTCTCCCATCAAGGTGGTGCTGAAAAGACGCAACGAGCCACTGAAGAAGGAGcgtcttaaatggaagaatgaGTACCCTATGACGGAGGGCCAGCTGAGGTGTAAGAGGGATGAGTTTTGGGACACGGCCCCAGCCTTTGACGGCAGGAAGGAGATTTGGGATGCGCTCCGAGCTGCAGCGGTGGCCGTAGAGCTTAACGACCTGGAAATGGCTCAGGCCATAGTGGACGGAGCCTGCATCACACTACCACATGGTACTCTGACAGAGAGTTATGATGAACTGGGGAACCGCTACCAGCTTCCTGCTTACACTCTAGCCCCTCCCGCCAATCTCATCACTGAACGCACCAATGACAGCGAAGCTCCCGATCAAAAGGAGCCGAAAAAGCCTCCCGCCTTTCCCAAAGAGGAGTTCCAGCTACAAGTTCGACTCTCGTGCGGTAAGGACCTCCGTATAAGCGCCTCCATGTCAGACACCATCTCCCAGCTGAAGACAGTCCTGGAGGGGCAGGAGGACATCGAAGTGGCCCACCAACGCTGGTTCTTTGCCGGTAAACTGCTCACAGACAAGATCCGACTCCAGGACACCAAGATACAGAAAGACTTTGTGGTCCAGGTCATCGTCAACAACTACTTACCAGTTACCAAACTCATGCCAAACTGAGGAGAAATGGAGAAAGATGGATGGGAGAGCAGGAGGAAAGGATTGAGATgaaagggggacagggagaggggtggcgAAAAACTGGGATGGAGTGCAGGCAGAAAAGGATGGGAGAATGTTGGTCAACGCCTTATTTCTCTCCTTTGGAAGTTCAAGCACACCAGGGTCATGATCGTTAGTGCACACCGTAGGAAAACgtaacaaaacattttgcaacatttCTCATTGGTCATGTTCAGATGGTCCGAAATGTGGAAAGACTTTTCTTTCATTTCGTGCCTAGTGAATAGGACACTGGACGGTTGCTGCAATGGAATGTTGGTTGCTGCAACAGAATGTTGTAATTAGTTTGTTTGCTTTTGTATTTCTTATCCTCTTTTTGTATTTTCCTAATAAGCCCACATTGTTACTgagtaaaaataaacaaattctGCATAGCCTGGCAAAGCACTGACAAACTGTATAATGAACGGGAAGAGAATCATGGCATATGGAGAAGAGATATTTCTCCCatgagtctgtctgtctacaaATCATTCCTTGTGAGTTTGTCCTTGTGGAACTTTGAACTGTGGAAAGTGTCCTGCCTGATGGTACAAATATTCTATTGGATCTCTATCTGTACTGAAAGCCAATCGATTTGTACCCTATCGATTGTCTAATCTTTACCTAATGGGAGAGAAGAATATTGACAGATTTATGAACGAAAGTGTATGTACTGTTTCAATACTTGTTGGATCATCATATACAAATATTTGTATATGTTTAACAAACCCCAAATAAATTTTACGTGACAAGGTTCATGAAAAGTCAACGATTTGAGGAAAAAGTGAATATACCGGTTTATAAAGGTGAAAATAGCAGATTTGATTTCCATCTACTGTATTTTTCGAACCAATTATGGAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73524 lncRNA upstream 53219 60320593 ~ 60320833 (+) True G66375
TU73521 lncRNA upstream 57516 60316305 ~ 60316536 (+) True G66372
TU73519 lncRNA upstream 61887 60311506 ~ 60312165 (+) True G66370
TU73455 lncRNA upstream 193803 60179896 ~ 60180249 (+) True G66310
TU73453 lncRNA upstream 197745 60175978 ~ 60176307 (+) True G66308
TU73588 lncRNA downstream 103107 60494733 ~ 60495095 (+) True G66435
TU73639 lncRNA downstream 113956 60505582 ~ 60505809 (+) True G66475
TU73644 lncRNA downstream 120044 60511670 ~ 60512034 (+) True G66480
TU73652 lncRNA downstream 132613 60524239 ~ 60559757 (+) True G66487
TU74675 lncRNA downstream 616903 61008529 ~ 61008729 (+) True G67445
XM_036981500.1 mRNA upstream 3863 60301493 ~ 60370189 (+) False LOC110526060
XM_021606664.2 mRNA upstream 3863 60349392 ~ 60370189 (+) False LOC110526060
XM_036981491.1 mRNA upstream 3863 60349392 ~ 60370189 (+) True LOC110526060
XM_036981519.1 mRNA upstream 65811 60305769 ~ 60308241 (+) True LOC110526075
XM_036981447.1 mRNA upstream 109843 60229471 ~ 60264209 (+) False LOC110526041
XM_021606709.2 mRNA downstream 11455 60403081 ~ 60427711 (+) True rrp12
XM_021606732.2 mRNA downstream 105344 60496970 ~ 60501618 (+) False prdm8
XM_036981567.1 mRNA downstream 105344 60496970 ~ 60501618 (+) True prdm8
XM_021606759.2 mRNA downstream 725624 61117250 ~ 61227125 (+) False LOC110526122
XR_002473891.2 mRNA downstream 738480 61130106 ~ 61132005 (+) False LOC110526134
TU73321 other upstream 431988 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 1048923 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 1673673 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 1708146 58665334 ~ 58665906 (+) True G64315
TU71238 other upstream 1786467 58586858 ~ 58587585 (+) True G64292
TU75047 other downstream 923248 61314874 ~ 61315252 (+) True G67806
TU75188 other downstream 1338139 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 2883337 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 4417963 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 5524109 65915735 ~ 65922285 (+) False LOC110527164

Expression Profile