RNA id: XM_036981604.1


Basic Information

Item Value
RNA id XM_036981604.1
length 2401
RNA type mRNA
GC content 0.51
exon number 14
gene id LOC110519525
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 60660467 ~ 60695525 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGACTGTGAGGGGTGAGgtagagggacaagagaggggCAGTCTGAAAGGCCAGTGTTGTCTACCTGTTCGAGAGGACACCTACGCACCAAAATGGCcacagaggagagaggtcaaCCTAAAGCCGTGCCCGAGACCACTGGGAAATTCAGACCACTTCTCTCTGTCACCTCCGATCAAGACagcTGTATCTTGCAAATATATGTGTGTAAACCAGAGAGAGGGGGTCTGGGCTTTGCTCTGATTGGAGGATGCAACGGAAGTACGCTCAGAGTGAAGGAGATATGCGCTGGAGGCATGGCGCAGCAGGATGGACAGCTCAGAGTGGGAGACATACTGCTCGAGGTGAATGGTATAATAGTATCAGGTCTGAGCCACTGTAAGGTGGTGGATATCCTCCGTCAGGCTGAGGGAAACATCCAACTCACAATCTGTAGAGACATACCAAGGGCCAACACAGCACCCTGCACTGATGTATCCTTCTCTATGGCCTTCCCTGGAGACAACATGGCCGTCTGTCCTGGATCCAATATGGCTTCCTGTCCTGGATCAAATATGGCCTCTTATCCTGGATCAAATATGGTACCTTGTCCTGGATCAAATATGGCCTCCTGCCCTGAAGTCAACATGGCTACCAGCAATGGATCCAACATGGCTCCCTGCACTGGATCAAATGTGTCAGTCTTCATCGAAGCCCGTATGTCGGACAATGCCGAGCCATTCTCCAACCCTTCTGCATGTTCCTCACCTGATGTCCAGCAGGAGGACCTTCCCCCTGAGGGGACTTCAGATCCAGTACCTGATGTAGAGGAGGACATTACCCCACTTTCACCCCCCGATGCCTCCTATCACCCCTCACTCCGCCTGCGGACCCTCACAGAAGAGGACATGGCTGGACAGGAGAGCTGTAACAGTAAACCCTCTCATCAAGCTTGCTGCCTGTCCAGCAAGAGTATGACTAACTTGCTCCATGAAGCCTCGGACAGGAACCAAATCCCTGTGATGCCATTGGACGAAACCATGACTGGCAGCAAAAACAGCCAATCAGATGGCTGGAGCAGCGAGGATGAGGATGATGAGACATTTGAAGCTAAAGGTCAGGAGACCATGTCACACTTCCCAGGTCCACCTATAGTATCAGAAGAAGAGTTGGCCAGACTAGCCATGATCAGTCCAGCTAAGACCAGTCAATACGCTGGGTCGAGAGTAAAAGCCCTCATACAGATTCTACAACATCAACTAGACCAGCAAGAACTGGTCCGAGAGTTCATGGCCTTGGAGCATCTAAAGCCGTCTGATAACTGTCTAGTGGGGAAAGCTCCGGAGAACCGGGAGAAGAACCGCTATCGTGACATCCTGCCCTACGATAAGACGCGTGTTCCAGTGGGTGATAACCAGGACTATATTAACGCCAGTTATATCCGTATGGAGGTTGGCAGTGAGGAGTTCATCTATATCTCCTGCCAGGGTCCTCTGCCCTCCACCGTGCCCGACTTCTGGCAGATGGTCTGGGAGAACAGGTCTGATGTGATAGCCATGATGACccaggaggtggagagaggcagGGTGAAGTGTCACTGCTACTGGCCAGAGAGGGTGAGCTGTCCCCTAGACACAGGGCGCTTCCAGCTCAGCCTGGAGAACCAGCAGATCAAGGAATACTTCCACATCAAGATCATCCGCATGGTGGAGAAAGagTCTGGTGAGACCCACTTTGTCCGTCACCTGAAGTTTATCCGTTGGCCTGACCACGGTGTGCCGCGGAGTTCAGAGCAGCTGGTCAGATTTATCCGCTACCTCCGAGCAGTCCACCATAAAGGACCTGTCACTGTACACTGTAGTGCTGGGATAGGACGAACAGGAGTACTGATCTGCACCGATGTCATCCTGAGTCTCATAGAGAACGATCTCCCGATCAACGTTAGTAACATTGTGAGGGAGATGAGACTGCAGCGATATGGCATGATTCAGACTAAGGAACAGTACCTGTTCTGCTACAAGGTATGGTTGGAGGTTCTACATCGCATCCTGCAGCTGCATGGTCAGCATTGGCAACCAGAGAGCCCCCGCAAACTTAATTCGAGCCCTCGTACACACAGTAACCGATGGCAACCTGAGAGCCCCCATGAAGATAATCAATTTGTTTGACCAGTTTTCTTTTCCCCCACCCGTTAGCTGATTTTGTTATGAACACTGTATATGTATGCGTTTTAGCCAATTCCTCTGTTCGTTTTATGTCATGCCAAAACATGACAGATGGGACGACCAGGCTACAGTATGTTTCTGCATGGTTTTGATATTTGGGTTTTGAATTTATTGATGGAGGTAGACATTTTTACTGTTGGTTATTTTGTGGGGGAGGGTTTGAGATGGCAGTGACTGATTAAAAACTTAATTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74243 lncRNA downstream 138239 60521813 ~ 60522228 (-) True G67023
TU74321 lncRNA downstream 154368 60505839 ~ 60506099 (-) True G67099
TU74318 lncRNA downstream 161133 60499111 ~ 60499334 (-) True G67096
TU74317 lncRNA downstream 161766 60498493 ~ 60498701 (-) True G67095
TU74316 lncRNA downstream 163159 60497079 ~ 60497308 (-) True G67094
TU74676 lncRNA upstream 318431 61008467 ~ 61008711 (-) True G67446
TU74690 lncRNA upstream 330139 61020175 ~ 61020408 (-) True G67459
TU74695 lncRNA upstream 332285 61022321 ~ 61022524 (-) True G67464
TU74881 lncRNA upstream 333724 61023760 ~ 61216832 (-) True G67641
TU74944 lncRNA upstream 460442 61150478 ~ 61187828 (-) True G67703
XM_036981581.1 mRNA downstream 121546 60525419 ~ 60538921 (-) True gdf10a
XM_021606720.2 mRNA downstream 165167 60430184 ~ 60495300 (-) False LOC110526097
XR_002473876.2 mRNA downstream 311158 60342589 ~ 60349309 (-) True LOC110526081
XR_002473877.2 mRNA downstream 311169 60342589 ~ 60349298 (-) False LOC110526081
XR_002473875.2 mRNA downstream 311279 60342589 ~ 60349188 (-) False LOC110526081
XM_036989748.1 mRNA upstream 5099 60695135 ~ 60707046 (-) True LOC110532522
XR_005052321.1 mRNA upstream 25908 60715944 ~ 60717300 (-) True LOC118964986
XM_021604527.2 mRNA upstream 556240 61246276 ~ 61311977 (-) False abcc2
NM_001124655.1 mRNA upstream 556349 61246385 ~ 61311441 (-) True abcc2
XM_021606940.2 mRNA upstream 712994 61403030 ~ 61418074 (-) True mlh1
TU74240 other downstream 199233 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 1505322 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 1874850 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 3261979 57397194 ~ 57398488 (-) True G63328
TU69997 other downstream 3597619 57052098 ~ 57062848 (-) False G63093
TU76069 other upstream 992242 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 1291695 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 1721486 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 2587172 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 3679866 64369902 ~ 64381356 (-) True LOC110526867

Expression Profile