RNA id: XM_021604527.2


Basic Information

Item Value
RNA id XM_021604527.2
length 5755
RNA type mRNA
GC content 0.52
exon number 32
gene id abcc2
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61246276 ~ 61311977 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGTCTTTATACAAGCTtgggtcttctctctctctccctttctctctctctctctctgtcttttactcACAAACTCAAACTCTGGACTTTAGTCAGGCTTGTTATGAGTGAAGAGAAGCGGCAGCGGGCCTCGTAGCGGGCTGGATCTTCACAGGAAGAGGTTGGATTGGTTGTGTTTCGGACTGGGGTGCGCTCACACACCCCTCGGGAGACATTtgtttatgtgtgcgtgtgttctgtgtgtgaatGTTCAGACACGTTGccaattactttattacatttgCAGTAGAGGGAGAAGCCCTAAAAAGGGAATTATGTCTTCAGTCAGGGTCGGAGTTAAGCATTAACCTCTCTTTACACTACCAATACAACCCTGGCCtgtgcctgggtgtgtgtgtatgcgtgtgtgtgtgtgtgtgaggagaccTCTTGTCCATTAAAGAGCTTCAAAGCTCAAAGCCCTGCTGAGTCACGTCCTGCGATTGTCTCGGTGTATGTGAGCAAATTGTATCTgcggagtgtgtttgtgtgttctgcTGTTGACGGAGTGGAGCAATTCAGAAGACTCAACCAATAGTGTCCCATCTTCTGATTGGAGGGGAACCTCTGGAGCGTGTGCTTGTTTTCTACTGTTGTTGGAGCAGAAAGGCCAGAGAGACTAGCCTTGATCGGAGCTGAGCCTGTGgagtgtgaggagtgtgtgtgttattgtcctGTCGTGTCTTCCTGACCAGAGCTGACTCCGGGGACACAATGACTACTGAAGCTCTGGAGAAGTACTGTGGATCCATCTTCTGGAACTCGTCGTTCCTGCAGCGTGAGGACCCAGACCTGCCAGTGTGTGTGGAGCAGACCGTGTTGGTGTGGGCTCCGCTGGGCTTCCTGTGGCTCTGTGCCCCCTGGCACATAGCAGTGCTCTGCAGGAAGGCCACCCCCACTAAACACCTGTCCAAACTATACCTCTGTAAACAGatTGTGGTTGGCCTGTTGTTCCTGACCGCCATAGCAGGTCTAGCTGTGACGTTAGGAGAGGACTATGGTCCAACCAGAGACACCACTGCGACAGAGAAAAACCCTTGGGTTTTCTATGCCAACCCCATTCTGTTCGCTGTCTCATGGATTCTGCTGGTACTCAGTcaggagggagtgaggaggagagagggagcggtgGACTCTACTACTCTGTTCCTCTTCTGGCTGATCCTGGTGGTCTGTGATGTCTTCCCCTTCCAGACCCTGCTACGAGAGGCCCTCAGAAtgggagAGATCCCAGACCTTCCTCGTTTCTGTCTCTTCTACATCTCCTTCGGGCTGGAGTTGATCGCCCTCATCCTGTCTGCCTTCGCAGATGTCCCCCGGGAAGCAGAGGATCTAGTCAAAAAGAACCCAGAGGTTGGAGCCGCATTTCTCAGCAGAATCACTTTCAATTGGTTCAACAGCATGGTGCTAAATGGTTTCAAGCGCCCTCTGGTCCAGAAGGACCTGTGGGAGCTAAGTGAGGCAGAGAGTACTCTCCAGATCAGTCAGCGTTTCCTGCAGACCATGCAGACAGAGCTGAAAGCAGCCAGAACCAGACTTCAGACCAAaatgaggaagagaggggaggagaaggcaAGCAAAGGCCAGGGAGAGGGCCTCCAAAACGGGCATCAGAATAGGCTGGGGAAGGGGGTCAGCCAGGATGTGCTGATGATGgaggaaaagggggatgaaaaggagaagaaggaggagaagaagaagaagaagaaagaagagaaggaatACTACCCCAAGTCGTGGCTCATCCCCACCATCGCTACCACATTTAAAGGGGTCCTGTGGGAATCAGCTATCTTCAAGCTCATAACGGACCTCCTATCCTTTGCCAGTCCACAGATCCTCAAGTTGATGATATCCTTCACTATGGACAAATCCATCTACACGTGGACAGGGTACATGTATGCAGTGCTGCTTATCCTGGTGGCCATCTTTCAGTCTCTGTTCCTGCAGCAGTACTTCCAACGCTGCTTCGTTCTGGGGATGAAAGTCAAAACAGCCATCATGGTTGCTGTGTACAAGAAGgctCTGGTCGTATCGAACGACGCCCGCAAGGAGTCGACGGTCGGGGAGACGGTGAACCTGATGTCAGCCGACGCTCATCGATTCAACGATGTCGTTAACTTCATCCACCTGCTGTGGTCGTGCCCACTGCAGATAGCGCTCGCTATCGCCTTCCTATGGATAGAACTTGGGCCTGCTGTACTGGCTGGATTGGCTGTCATGGTCCTCATGGTGCCCATCAATGGTCTGCTGGCCAACATGTCCAAGAACGTTCAGATTGAGAACATGAGGTACAAAGACAAACGGATGAAAATCGTGAACGAGATGCTGAATGGCATCAAGATCCTGAAGCTATATGCATGGGAACCATCATTCCAGAACCAGGTGATGGGAATCAGAGAACAAGAGCTGGTGGTCATGAGGAAGTTTGCCTACCTCTCCTCCGTCTCCACCTTCGTCTTCTCCTGCGCCCCCGCCCTGGTCTCCTTGGCAACCTTTGCAGTGTTTGTAGCAGTGGACTCAGAGAACGTTCTGGATGCAGGGAAAGCCttcacctccatctctcttttcaaCATCCTGCGCTTCCCTCTGGCCTTCCTGCCCATGCTCATAGCTGCAATGGTGCAGACCAGTGTTTCTAAGAAGCGTCTGGAAAAGTTCCTGGGAGGAGACGACCTGGACACCAACATCGTGCGTCACGACCCCAGCTTCAACACAGCCGTGAGTGTCTGTAATGGAACCTTTGCTTGGGAGAAACACGCTGAACCTGTTCTCAAAAAtgtgtcattgGAAATTAAGCCCGGCAAGCTGGTAGCAGTGGTGGGAGTGGTGGGTTCTGGTAAATCGTCTCTGATATCAGCAATGCTGGGAGAGATGCACAGCTCAAAGGGCTTCATCAAtgtacagGGGTCGGTAGCCTTCGTGCCCCAACAGGCCTGGATCCAGAATGCCACTCTCAGGGACAACATCCTGTTTGGCTACCCACTGGAGGACTCTCGTTTCCAGGCTACGCTGGAGGCCTGCGCCCTGGGGCCCGACCTGGAGCTGCTGCCTgggggagaccagactgagatCGGGGAGAAGGGTATAAACCTGTCCGGGGGTCAGAAGCAGCGTGTGAGCCTGGCCAGGGCGGCCTACAGCCAGGCTGATGTTTACCTGCTGGATGACCCTCTCTCAGCTGTAGACTCTCATGTGGGCAAACATCTGTTTGAGGAGGTGGTGGGACCTAAAGGCATACTCAAAGATAAGACCCGTATCTTGGTGACCCATGGGGTGAGTTTCCTGCCCTACGTGGACGAGATTGTTGTACTGAAAGAGGGATGTGTTTCTGAGGTCGGGTCATACCAAAGTCTCAAGGACAGCAAGGGGGCTTTCTCTGAGTTCCTGGACACCTATGCTAAAGACGAGGGCAAGAAACAcactgATCCAACCTCTGATGGTGAGGAGGTGGGGCTAGTCCCTGATTTACAGGATCCTCAGGCCGACACCCCTCCTGAAGACATCGTCTCAATGAccctgaggagagagagcagcATCCGACGCAGCCAACGCAATGgaagtGTTAGGTTGAGAAAGAACAGTTCCCTAAAGAAACCGAAGCCACCTGCTGATGACGAGACCAAGAAAGGCCAGAGGCTGATCGAGAAGGAAACCATGGAGACGGGACAGgTGAAGTTCTCGGTGTATCTCCAGTACCTACGTGCAATGGGCTGGGGCTACTCCACCATGTTCTTCCTAGTGTACTTCATCCAGAACGTTGCTTTCATTGGTCAGAACCtctggctgagtgactggaccAATGACGCGGAGGATTACTACAATAAGACCTACCCCAACTGGAAGAGGGACACTCGGATTGGTGTATTTGGTGCGCTAGGCGTGGCTCAAGGTGTATTTGTATTCATGGGCACCCTGCTCCTGGCTAACGGCTCTATCAATGCGTCTCGTATCCTTCACTCCCGGCTGCTCAACAACATTCTACGTGTTCCCATGATGTTCTTTGACACTACCCCATCCGGCAGGGTTGTCAACCGCTTTGCCAAGGACATATTCACAGTGGACGAGGCCATCCCCCAATCGTTTCGTTCGTGGATCATGTGTTTCCTGGGTGTGCTTGGAACACTGTTTGTCATCTGCCTGGCCACACCCATTTTCACCGCCATCATCATCCCTCTGGCTGTGGTCTACTACTTCGTTcagCGTTTCTACGTGGCAAGCTCACGGCAGCTGCGTCGTCTGGACTCTGTGTCTCGGTCTCCCATCTATTCTCACTTTGGAGAGACAGTGTCTGGTCTGTCGGTCATCCGGGCCTATGGACACCAGGACCGCTTCCTCAAACACAACGAGAAAATAATTGATGAAAACCTCAAGTCGGTCTACCTGTGGATAATCTCGAACAGGTGGCTGGCCATCCGTCTAGAGTTCCTTGGTAACCTGGTAGTGTTTTTCTCAGCTCTGCTTGCTGTCATTGCCCGGGACTCTCTGGACAGTGGCCTGGTCGGCCTCTCCATCTCCTATGCCCTCAACGTGACCCAGACACTGAACTGGCTGGTGAGGATGACATCAGAACTGGAGACCAACATAGTAGCTGTGGAGAGAGTCAGCGAGTACACGGAGATGGAGAAtgagGCGGACTGGGTGTCAGGGATACGACCGCCAGAGAAGTGGCCTGAGGCTGGGAGGCTGAGGTTCGAAAACTTCAAGGTCCGCTACCGACCTGAACTGGATTTGGTGCTGCACGGGATCACCTGCGACATCGACAGCACAGAGAAgATCGGTATAGTGGGTCGAACAGGTGCTGGGAAGTCCAGTCTGACCAACTGCCTGTTTAGAATCATTGAGGCAGCAGAGGGACGGATCTTGATCGATGGGACAGACATCGCTACTCTAGGCCTACATGACCTCAGGACCAGACTGACTATTATACCACAGGACCCAGTGCTGTTCTCAGGGACGCTGCGTATGAACCTAGACCCGTTTGAGACCTTCAGTGATGAGGAGATCTGGCGCGTCCTCGAGCTGTCCCATTTGAAGGAGTACGTGGGGGGGTTACAGGAAGGACTGACCCACGAGGTgtcagaggggggagagaacCTCAGTATTGGTCAGAGACAGTTGTTGTGTCTGGCCCGTGCCCTGCTGAGGAAGTCTCGTATTCTGATTCTGGACGAGGCTACAGCTGCTGTGGACCTAGAGACAGACAGCCTGATCCAGAAAACCATACGACGAGAGTTCTCCCATTGCACTGTACTCACCATCGCACACAGACTCCACAGCATCCTGGACAGTAGCAGGGTGATGGTGTTGGATGCTGGGAAGATCGTGGAGTTTGACTCTCCCAGCACTCTCTTCAACAAACAGGGTCACTTCTATTCCATGGCAAGGGATGCTGGGATCACTACAGTGGACAGCACTGCTCTGGACAGCACTGCATTGGATAGCACAGCTCTCTGAGACTTGGGACTTGTTGTACAGTTGGTCTCAGAGAGGGCAGAATCATGCCTTAACTGCAGAGGGGATGCTAGTCCCTGGTGTTGATTGTAAAATAGAGAATGAGTTCTCAATAACTTACCGGAGGGGTATATTACAAAGCAGTATCAACAAGTTATCCGGGTAACTTTATGAAGCTTAAGTTGAATATGGGCTATTGAGAAATATTATACCATCTCAAAAAGACTACTTCTTTGTGATAAAGATGCATGCCAAATGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75004 lncRNA downstream 3086 61242464 ~ 61243190 (-) True G67763
TU75003 lncRNA downstream 4332 61241325 ~ 61241944 (-) True G67762
TU74968 lncRNA downstream 16011 61184652 ~ 61230265 (-) True G67727
TU74881 lncRNA downstream 29444 61023760 ~ 61216832 (-) True G67641
TU74944 lncRNA downstream 58448 61150478 ~ 61187828 (-) True G67703
TU75045 lncRNA upstream 660 61312637 ~ 61312896 (-) True G67804
TU75934 lncRNA upstream 10171 61322148 ~ 61322805 (-) True G68609
TU75938 lncRNA upstream 17595 61329572 ~ 61329843 (-) True G68613
TU75943 lncRNA upstream 72318 61384295 ~ 61399594 (-) True G68617
TU76031 lncRNA upstream 184284 61496261 ~ 61496591 (-) True G68701
XR_005052321.1 mRNA downstream 528976 60715944 ~ 60717300 (-) True LOC118964986
XM_036989748.1 mRNA downstream 539230 60695135 ~ 60707046 (-) True LOC110532522
XM_036981596.1 mRNA downstream 550751 60660467 ~ 60695525 (-) True LOC110519525
XM_036981604.1 mRNA downstream 556240 60660467 ~ 60690036 (-) False LOC110519525
XM_036981581.1 mRNA downstream 707355 60525419 ~ 60538921 (-) True gdf10a
XM_021606940.2 mRNA upstream 91053 61403030 ~ 61418074 (-) True mlh1
XM_021606961.2 mRNA upstream 106402 61418379 ~ 61429118 (-) False LOC110526202
XM_036981742.1 mRNA upstream 106447 61418424 ~ 61429117 (-) False LOC110526202
XM_036981741.1 mRNA upstream 106447 61418424 ~ 61429118 (-) False LOC110526202
XM_036981748.1 mRNA upstream 106447 61418424 ~ 61429118 (-) False LOC110526202
TU74240 other downstream 785042 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 2091131 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 2460659 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 3847788 57397194 ~ 57398488 (-) True G63328
TU69997 other downstream 4183428 57052098 ~ 57062848 (-) False G63093
TU76069 other upstream 370301 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 669754 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 1099545 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 1965231 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 3057925 64369902 ~ 64381356 (-) True LOC110526867

Expression Profile