RNA id: NM_001124655.1


Basic Information

Item Value
RNA id NM_001124655.1
length 5107
RNA type mRNA
GC content 0.53
exon number 33
gene id abcc2
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61246276 ~ 61311977 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcTGTTGACGGAGTGGAGCAATTCAGAAGACTCAACCAATAGTGTCCCATCTTCTGATTGGAGGGGAACCTCTGGAGCGTGTGCTTGTTTTCTACTGTTGTTGGAGCAGAAAGGCCAGAGAGACTAGCCTTGATCGGAGCTGAGCCTGTGgagtgtgaggagtgtgtgtgttattgtcctGTCGTGTCTTCCTGACCAGAGCTGACTCCGGGGACACAATGACTACTGAAGCTCTGGAGAAGTACTGTGGATCCATCTTCTGGAACTCGTCGTTCCTGCAGCGTGAGGACCCAGACCTGCCAGTGTGTGTGGAGCAGACCGTGTTGGTGTGGGCTCCGCTGGGCTTCCTGTGGCTCTGTGCCCCCTGGCACATAGCAGTGCTCTGCAGGAAGGCCACCCCCACTAAACACCTGTCCAAACTATACCTCTGTAAACAGatTGTGGTTGGCCTGTTGTTCCTGACCGCCATAGCAGGTCTAGCTGTGACGTTAGGAGAGGACTATGGTCCAACCAGAGACACCACTGCGACAGAGAAAAACCCTTGGGTTTTCTATGCCAACCCCATTCTGTTCGCTGTCTCATGGATTCTGCTGGTACTCAGTcaggagggagtgaggaggagagagggagcggtgGACTCTACTACTCTGTTCCTCTTCTGGCTGATCCTGGTGGTCTGTGATGTCTTCCCCTTCCAGACCCTGCTACGAGAGGCCCTCAGAAtgggagAGATCCCAGACCTTCCTCGTTTCTGTCTCTTCTACATCTCCTTCGGGCTGGAGTTGATCGCCCTCATCCTGTCTGCCTTCGCAGATGTCCCCCGGGAAGCAGAGGATCTAGTCAAAAAGAACCCAGAGGTTGGAGCCGCATTTCTCAGCAGAATCACTTTCAATTGGTTCAACAGCATGGTGCTAAATGGTTTCAAGCGCCCTCTGGTCCAGAAGGACCTGTGGGAGCTAAGTGAGGCAGAGAGTACTCTCCAGATCAGTCAGCGTTTCCTGCAGACCATGCAGACAGAGCTGAAAGCAGCCAGAACCAGACTTCAGACCAAaatgaggaagagaggggaggagaaggcaAGCAAAGGCCAGGGAGAGGGCCTCCAAAACGGGCATCAGAATAGGCTGGGGAAGGGGGTCAGCCAGGATGTGCTGATGATGgaggaaaagggggatgaaaaggagaagaaggaggagaagaagaagaagaagaaagaagagaaggaatACTACCCCAAGTCGTGGCTCATCCCCACCATCGCTACCACATTTAAAGGGGTCCTGTGGGAATCAGCTATCTTCAAGCTCATAACGGACCTCCTATCCTTTGCCAGTCCACAGATCCTCAAGTTGATGATATCCTTCACTATGGACAAATCCATCTACACGTGGACAGGGTACATGTATGCAGTGCTGCTTATCCTGGTGGCCATCTTTCAGTCTCTGTTCCTGCAGCAGTACTTCCAACGCTGCTTCGTTCTGGGGATGAAAGTCAAAACAGCCATCATGGTTGCTGTGTACAAGAAGgctCTGGTCGTATCGAACGACGCCCGCAAGGAGTCGACGGTCGGGGAGACGGTGAACCTGATGTCAGCCGACGCTCATCGATTCAACGATGTCGTTAACTTCATCCACCTGCTGTGGTCGTGCCCACTGCAGATAGCGCTCGCTATCGCCTTCCTATGGATAGAACTTGGGCCTGCTGTACTGGCTGGATTGGCTGTCATGGTCCTCATGGTGCCCATCAATGGTCTGCTGGCCAACATGTCCAAGAACGTTCAGATTGAGAACATGAGGTACAAAGACAAACGGATGAAAATCGTGAACGAGATGCTGAATGGCATCAAGATCCTGAAGCTATATGCATGGGAACCATCATTCCAGAACCAGGTGATGGGAATCAGAGAACAAGAGCTGGTGGTCATGAGGAAGTTTGCCTACCTCTCCTCCGTCTCCACCTTCGTCTTCTCCTGCGCCCCCGCCCTGGTCTCCTTGGCAACCTTTGCAGTGTTTGTAGCAGTGGACTCAGAGAACGTTCTGGATGCAGGGAAAGCCttcacctccatctctcttttcaaCATCCTGCGCTTCCCTCTGGCCTTCCTGCCCATGCTCATAGCTGCAATGGTGCAGACCAGTGTTTCTAAGAAGCGTCTGGAAAAGTTCCTGGGAGGAGACGACCTGGACACCAACATCGTGCGTCACGACCCCAGCTTCAACACAGCCGTGAGTGTCTGTAATGGAACCTTTGCTTGGGAGAAACACGCTGAACCTGTTCTCAAAAAtgtgtcattgGAAATTAAGCCCGGCAAGCTGGTAGCAGTGGTGGGAGTGGTGGGTTCTGGTAAATCGTCTCTGATATCAGCAATGCTGGGAGAGATGCACAGCTCAAAGGGCTTCATCAAtgtacagGGGTCGGTAGCCTTCGTGCCCCAACAGGCCTGGATCCAGAATGCCACTCTCAGGGACAACATCCTGTTTGGCTACCCACTGGAGGACTCTCGTTTCCAGGCTACGCTGGAGGCCTGCGCCCTGGGGCCCGACCTGGAGCTGCTGCCTgggggagaccagactgagatCGGGGAGAAGGGTATAAACCTGTCCGGGGGTCAGAAGCAGCGTGTGAGCCTGGCCAGGGCGGCCTACAGCCAGGCTGATGTTTACCTGCTGGATGACCCTCTCTCAGCTGTAGACTCTCATGTGGGCAAACATCTGTTTGAGGAGGTGGTGGGACCTAAAGGCATACTCAAAGATAAGACCCGTATCTTGGTGACCCATGGGGTGAGTTTCCTGCCCTACGTGGACGAGATTGTTGTACTGAAAGAGGGATGTGTTTCTGAGGTCGGGTCATACCAAAGTCTCAAGGACAGCAAGGGGGCTTTCTCTGAGTTCCTGGACACCTATGCTAAAGACGAGGGCAAGAAACAcactgATCCAACCTCTGATGGTGAGGAGGTGGGGCTAGTCCCTGATTTACAGGATCCTCAGGCCGACACCCCTCCTGAAGACATCGTCTCAATGAccctgaggagagagagcagcATCCGACGCAGCCAACGCAATGgaagtGTTAGGTTGAGAAAGAACAGTTCCCTAAAGAAACCGAAGCCACCTGCTGATGACGAGACCAAGAAAGGCCAGAGGCTGATCGAGAAGGAAACCATGGAGACGGGACAGgTGAAGTTCTCGGTGTATCTCCAGTACCTACGTGCAATGGGCTGGGGCTACTCCACCATGTTCTTCCTAGTGTACTTCATCCAGAACGTTGCTTTCATTGGTCAGAACCtctggctgagtgactggaccAATGACGCGGAGGATTACTACAATAAGACCTACCCCAACTGGAAGAGGGACACTCGGATTGGTGTATTTGGTGCGCTAGGCGTGGCTCAAGGTGTATTTGTATTCATGGGCACCCTGCTCCTGGCTAACGGCTCTATCAATGCGTCTCGTATCCTTCACTCCCGGCTGCTCAACAACATTCTACGTGTTCCCATGATGTTCTTTGACACTACCCCATCCGGCAGGGTTGTCAACCGCTTTGCCAAGGACATATTCACAGTGGACGAGGCCATCCCCCAATCGTTTCGTTCGTGGATCATGTGTTTCCTGGGTGTGCTTGGAACACTGTTTGTCATCTGCCTGGCCACACCCATTTTCACCGCCATCATCATCCCTCTGGCTGTGGTCTACTACTTCGTTcagCGTTTCTACGTGGCAAGCTCACGGCAGCTGCGTCGTCTGGACTCTGTGTCTCGGTCTCCCATCTATTCTCACTTTGGAGAGACAGTGTCTGGTCTGTCGGTCATCCGGGCCTATGGACACCAGGACCGCTTCCTCAAACACAACGAGAAAATAATTGATGAAAACCTCAAGTCGGTCTACCTGTGGATAATCTCGAACAGGTGGCTGGCCATCCGTCTAGAGTTCCTTGGTAACCTGGTAGTGTTTTTCTCAGCTCTGCTTGCTGTCATTGCCCGGGACTCTCTGGACAGTGGCCTGGTCGGCCTCTCCATCTCCTATGCCCTCAACGTGACCCAGACACTGAACTGGCTGGTGAGGATGACATCAGAACTGGAGACCAACATAGTAGCTGTGGAGAGAGTCAGCGAGTACACGGAGATGGAGAAtgagGCGGACTGGGTGTCAGGGATACGACCGCCAGAGAAGTGGCCTGAGGCTGGGAGGCTGAGGTTCGAAAACTTCAAGGTCCGCTACCGACCTGAACTGGATTTGGTGCTGCACGGGATCACCTGCGACATCGACAGCACAGAGAAgATCGGTATAGTGGGTCGAACAGGTGCTGGGAAGTCCAGTCTGACCAACTGCCTGTTTAGAATCATTGAGGCAGCAGAGGGACGGATCTTGATCGATGGGACAGACATCGCTACTCTAGGCCTACATGACCTCAGGACCAGACTGACTATTATACCACAGGACCCAGTGCTGTTCTCAGGGACGCTGCGTATGAACCTAGACCCGTTTGAGACCTTCAGTGATGAGGAGATCTGGCGCGTCCTCGAGCTGTCCCATTTGAAGGAGTACGTGGGGGGGTTACAGGAAGGACTGACCCACGAGGTgtcagaggggggagagaacCTCAGTATTGGTCAGAGACAGTTGTTGTGTCTGGCCCGTGCCCTGCTGAGGAAGTCTCGTATTCTGATTCTGGACGAGGCTACAGCTGCTGTGGACCTAGAGACAGACAGCCTGATCCAGAAAACCATACGACGAGAGTTCTCCCATTGCACTGTACTCACCATCGCACACAGACTCCACAGCATCCTGGACAGGCAGGTGATGGTGTTGGATGCTGGGAAGATCGTGGAGTTTGACTCTCCCAGCACTCTCTTCAACAAACAGGGTCACTTCTATTCCATGGCAAGGGATGCTGGGATCACTACAGTGGACAGCACTGCTCTGGACAGCACTGCATTGGATAGCACAGCTCTCTGAGACTTGGGACTTGTTGTACAGTTGGTCTCAGAGAGGGCAGAATCATGCCTTAACTGCAGAGGGGATGCTAGTCCCTGGTGTTGATTGTAAAATAGAGAATGAGTTCTCAATAACTTACCGGAGGGGTATATTACAAAGCAGTATCAACA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05666 ABCC2; ATP-binding cassette, subfamily C (CFTR/MRP), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75004 lncRNA downstream 3195 61242464 ~ 61243190 (-) True G67763
TU75003 lncRNA downstream 4441 61241325 ~ 61241944 (-) True G67762
TU74968 lncRNA downstream 16120 61184652 ~ 61230265 (-) True G67727
TU74881 lncRNA downstream 29553 61023760 ~ 61216832 (-) True G67641
TU75045 lncRNA upstream 1196 61312637 ~ 61312896 (-) True G67804
TU75934 lncRNA upstream 10707 61322148 ~ 61322805 (-) True G68609
TU75938 lncRNA upstream 18131 61329572 ~ 61329843 (-) True G68613
TU75943 lncRNA upstream 72854 61384295 ~ 61399594 (-) True G68617
TU76031 lncRNA upstream 184820 61496261 ~ 61496591 (-) True G68701
XR_005052321.1 mRNA downstream 529085 60715944 ~ 60717300 (-) True LOC118964986
XM_036989748.1 mRNA downstream 539339 60695135 ~ 60707046 (-) True LOC110532522
XM_036981596.1 mRNA downstream 550860 60660467 ~ 60695525 (-) True LOC110519525
XM_036981604.1 mRNA downstream 556349 60660467 ~ 60690036 (-) False LOC110519525
XM_036981581.1 mRNA downstream 707464 60525419 ~ 60538921 (-) True gdf10a
XM_021606940.2 mRNA upstream 91589 61403030 ~ 61418074 (-) True mlh1
XM_021606961.2 mRNA upstream 106938 61418379 ~ 61429118 (-) False LOC110526202
XM_036981742.1 mRNA upstream 106983 61418424 ~ 61429117 (-) False LOC110526202
XM_036981741.1 mRNA upstream 106983 61418424 ~ 61429118 (-) False LOC110526202
XM_036981748.1 mRNA upstream 106983 61418424 ~ 61429118 (-) False LOC110526202
TU74240 other downstream 785151 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 2091240 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 2460768 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 3847897 57397194 ~ 57398488 (-) True G63328
TU69997 other downstream 4183537 57052098 ~ 57062848 (-) False G63093
TU76069 other upstream 370837 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 670290 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 1100081 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 1965767 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 3058461 64369902 ~ 64381356 (-) True LOC110526867

Expression Profile