RNA id: XM_021606780.2


Basic Information

Item Value
RNA id XM_021606780.2
length 3780
RNA type mRNA
GC content 0.49
exon number 28
gene id lrrfip2
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61342105 ~ 61401807 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGATTCCGCTACGACCGGAAgagacttttcgtagcaggtagGAGACCGTTTCCTAATTGAATTATCCTAACCTCACGAAAAACTCACTTCCGGTCGTAGCTGTGTCGAAGTGGCGTGTTTATAGGGAATCTCGTAAAAAGAAACCCCCACTCCCACTGATTCACAGCTGTCAGTTGGAGGAAAAAAACACTGTCAATCTTTGGGAGGAACCATTGTACAGTATTTTAACAACCAAGACGAAGAAAGAGCAAATCCTGGAAACGTCAACGTCGTTTAGAAGCTTCTACGAGCCAGGCGAATCTCTTTGAAAAGGCGTGACGTGAAGAGCAGTGTCAGTTTGCTCTGTCACACATTAGAAATTGGGGTTGGCTAGCTAGTAGCTGGCTAACCAGCTAGCCAGCTAAATTTATACTGCTCAAAGGGATTGGCCTTCTCTTTTGCATTGGGGTCATTACACCGGAAAGAACATCTCAGGATTCAATTAAACCTCATTTTTATGTTTTGGGTCCCAAGGAAGGattttttcccccCACACTGTGTTGCTCTAATTTGGCCCTGAACGTGTTGGTGGAGCTGCAGTTGCACAGAAGCCATGGGGACACCAGGTAGAAAGCGTGCCCCTATCAAGGACCGGTTTTCAGCTGAGGATGAAGCCCTTAGTAGCATTGCCCGGGAGGCGGAGGCCAGGCTGGCTGCAAAGAGAGTGGCCAGGGCGGAAGCAAGGGACATCCGAATGAGAGAACTCGAACGGCAACAGAAAGAGCTCTCCTCTCGCCACTCCTCATCCAGCAGCAGGAAAAGCTGGGGCTCGATCCACCAATGGATGGCCGACACAGAGAAGGCCCGGCACTCTGGAACTAGTACTAGATCCAGTAGCCATCATCGGCGGGATGATGATGTCATATCGGTCCGTAGCACTGGAAGCTACAGGTCAACCTCTTCATTGCGAGACCTGGGCAGCTCATCTTATAAAAGCCTGGCCAGCACCTCTCATCGAAGAGACCTGGTGTCTGACGGCCTGTCCAATAGCTCGGCCCTGAAGAGTAGCTCCTCTGTGAAGGGTAGCTCCTCTCTGAAGAGCTCCCGCTCCACTAGCTCTGTGTACAACGACCTGCATAAGAAGGCTCCCGTGTCCAGCAGCTCCAGGAAGGGCCtgctgactGGCTTGTACCACGATCAGAGGAACTACAGCAGCTTAAAGAACACCTCCAAACTTCCTCCTCCCACTACTTCCACCTATCAGCCTCGGGCCCCATCTGTGGCCTCCACCGCTGGCTCTGGTTCGGGGCTGACGCGCAGCTACAGCCTGGCTTCTATAAATGACGACGGTCTGTATGGCTCGTACACTGGTTCTCAATTGCATACTCCCTCTGAGTACAGCTGGTGCTCCACCCGGAGCAGCCCTGTGAACTCCTCTGATGACGATACTGCCAGCACCGTGTCCCAGGAGCGCTACAGTCGCGGCAGGAGAGACAGCGTGTCGTCTGATTTCTCTGACATCAGTGAGTCGGCCGCTGACTATTTCAGCCGCTCCAACCGCAGGGGCAGCGTTGTGTCTGACCTGGATGACCTGTGTATCCCAGACGACCTGGACGCTCTGGATGAAAAATGTGATAAGACCTTCGTAGACTACAGCCGGCCATCCTCGCGCTGCACCACTCCCGGCCTCTCCCCGGCCACCCTGGCCTCCCTGGGGGGGACCTCCTCGAGACGGGGcagtgcagacacaggcagcATTGTCGATCCTGACACCAGTCTGAGTGAATtgaggGATATCTATGATCTAAAGGACCAGATTCAGGATGTAGAGGGGCGGTACATGCAGGGGCTTAAAGAGCTGAAGGAGTCGCTCTCGGAGGTGGAGGAGAAGTATAAAAAAGCCATGGTATCGAACGCACAGCTGGACAACGACAAAACCAACCTCGTCTATAACGTGGACACACTCAAGGACGTGATCGAGGAGATGGAAGAGCAGATGGCCGAGATGCGGAGGGAAACCGAGGACAAGTCTAAGGAACTAGAAAGACAAAAGCACACATGCACAGTCCTGCAGCACAAACAAGTGGAGTTAAAAGAGGGAATCCGCCAGAGAGATGAGCTCATAGAGAAGAACCAGCGAATCCAGACTAACTTAGATACCCTCACCAGAGAGGTGTTTGACCTGCAGGAAACGATAAACTGGAAGGACAAAAAGATTGGGGCCTTAGAGAGGCAGAAAGAGTACTTTGATTGCATTAGGAATGAGAGGGATGAGCTCAGAGATGAGCTGGCTGACATCAAGGCGAAGGCCAAAACAGGAGAGAAACACGGCCTGGTCATAATCCCTGAGGGCATGCCTAACGGGGACATCAGCCACGACGACCCAGCCACAGGGATCACTGTGGTCACACAGGAGGCTGCCCAGGTGCtggagtcagcaggagaaggGCCTCTGGATGTTAGGCTACGAAAGCTTGCGGATGAAAAGGATGAACTCTTAGCTCAGATCAGGAAGTTGAAAATGCAGCTGGAGGATGAAAGGCAGAAGCACTCGAAGATGGAGAACGCcttcacagagggagagagaatggagaatgGCACTGATCTGCACGTCATCGAGATGCAGAGAGATGCCAACAGACAGATAAGTGAATACAAGTTCAAGCTCTCGAAGGCAGAACAGGAAATGGGCACAATGGAACAAAACATCAACAGACTTGAAGGACAAGTGTCCAGATACAAGGCATCGGCGGAAAACTCAGAGAAAATAGAAGATGAgctgaaaattgaaaaaaggaaACTTCAAAGGGAGCTGCGTACAGCTCTGGATAAGACtgaggagatggagatgaccaACAACCACCTAGTAAAGCGCCTTGAGAAGATGAAGGCCAATCGGAACGCCCTTCTGTCTCAGCAGTGAGGTCTGCTGGATTGCCGCAGAAGCCCTTAACTCACACCTCAGTGTCTGGAGCGCATTTCCATTCTTCCTGTAACACTTAAAGTTGTGTAGCAAAACCAAAAACACTTACAGAAAAAAGCAACACTGGTAGCACCGAGGCaagagtttttttttatttttttttttttaaataaaggatTAGCATTGGTTGTGCTGCACCAGTGTCTTCGGAAGGGAGACTCAACCTATTAAACCATAGTTACTAGGGGGAGGTGATGAATCTAAGGAAAATTTGACTCATTACTTTATTTTTCAAAGATTTGTACTACATGTTATTCACAAGGTTTTACTGCTGGGTGCTTGGCTATTctaatttttttttaataagtTGCATGAATGAGTATAATGGCGCTTTTTAACTGTTAAACCCTTTCGGCTGCTCTCTGGCCGTGCACCTATCCATAATCCCTCACACAGTGAAGTGCCTTCTCACACCTGGAGACTGAGGGTTTTGCATTAACCAAACAATTCAAAACAATAACTGGTACAGAATTATGTATTTAAAGGTGCAGTCATGATTTAATGAAATATATAGAACCAATTGTCTGCAGAGGTTTCTCAAATATTTAAAGATTTCTTGGCAATAAGTGTAAATGTCAGAACTGTAAATACAAGGTAGATTTGTTCATTTTTTTTGCATGGGTTATGGCACATTGAATTCCATTTGTAAGAGTGATGGTTTGAGGTTCTTTATTTGGGGTACATCAGAAGACAGCACTACATACCACTTCTCAAACAGTGTTCGCTGCTTTGAAAGCCAAGCAGTTTCAAGTCTCAGGACCACACAGTGATTGTGTCTGGGGCAGCTATCGCATTGAATAAACTCTTAACAGATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75076 lncRNA upstream 5246 61336626 ~ 61336958 (+) True G67828
TU75074 lncRNA upstream 15056 61326786 ~ 61327148 (+) True G67826
TU75069 lncRNA upstream 20699 61321213 ~ 61321505 (+) True G67821
TU75053 lncRNA upstream 22337 61319593 ~ 61319867 (+) True G67812
TU74859 lncRNA upstream 39939 61300176 ~ 61302265 (+) True G67622
TU75096 lncRNA downstream 7622 61409429 ~ 61410616 (+) True G67847
TU75104 lncRNA downstream 15323 61417130 ~ 61417727 (+) True G67855
TU75106 lncRNA downstream 21468 61423275 ~ 61428564 (+) True G67856
TU75154 lncRNA downstream 109828 61511635 ~ 61511835 (+) True G67897
TU75120 lncRNA downstream 139714 61541521 ~ 61544200 (+) False G67870
XM_021606759.2 mRNA upstream 115079 61117250 ~ 61227125 (+) False LOC110526122
XR_002473891.2 mRNA upstream 210199 61130106 ~ 61132005 (+) False LOC110526134
XM_021606732.2 mRNA upstream 840586 60496970 ~ 60501618 (+) False prdm8
XM_036981567.1 mRNA upstream 840586 60496970 ~ 60501618 (+) True prdm8
XM_021606709.2 mRNA upstream 914493 60403081 ~ 60427711 (+) True rrp12
XM_021606975.2 mRNA downstream 35800 61437607 ~ 61488427 (+) False LOC110526206
XM_036981774.1 mRNA downstream 35800 61437607 ~ 61488427 (+) False LOC110526206
XM_021606984.2 mRNA downstream 36172 61437979 ~ 61488427 (+) True LOC110526206
XM_021606997.2 mRNA downstream 99207 61501014 ~ 61505305 (+) True LOC110526212
XM_021607008.2 mRNA downstream 116146 61517953 ~ 61540937 (+) False herc4
TU75047 other upstream 26952 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 1400140 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 2017075 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 2641825 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 2676298 58665334 ~ 58665906 (+) True G64315
TU75188 other downstream 327958 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 1873156 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 3407782 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 4513928 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 4513928 65915735 ~ 65922285 (+) True LOC110527164

Expression Profile