RNA id: XM_021606940.2


Basic Information

Item Value
RNA id XM_021606940.2
length 2832
RNA type mRNA
GC content 0.49
exon number 19
gene id mlh1
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61403030 ~ 61418074 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGACACCACTCCGTTATTTTGTCAACAAGGCAGTATTGGTGCATCGTCCAGAAACATACATCTCTTTTCCATAAAATAAATGTGTGCTTTTTCTAACTAGTTTTTATTGTGAAGGCAGATGTCACTGTTTCATGGGAAAACAGAATAATACGAATTACTTAATTATTGCTTAATAATtacttcacttttgttttgaggcGACCTCGGTCTCGGACAGAGCGGGTTACCTGGCTCACGTCCGAGAGGCAGCCCGGTTCCAAATCGAATGCAATCAACTTTCAGCCGGTGCAAAACACGGCTCAACGGGCGCACTGGCGAGATTAATCGAACCCCTCACTCTCCCCCGCGCTTTTAACAACATGTTGTGATGGTGGTAGGATGTTAAGCTAGCTACTCTTATTAAGTAAGGGTGTCCCATTTAAGCAGCTATTTGTGTTACTTCTGATAATATTCACAATCTGAATCAAAGCTAACAGTATGTCCGGGGTGATTCGGAGACTCGATGAGACCGTTGTTAATCGGATTGCTGCTGGAGAAGTTATCCAACGTCCTGCAAATGCTATCAAAGAATTGCTTGAAAACTGTTTAGATGCCAAGTCCACCAACATACAGGtgactgtgaaggaggggggtcTGAAACTTATCCAGATACAAGACAATGGCACTGGCATCAGgAAAGAAGATATGGAAATAGTATGTGAACGGTTTACAACAAGCAAGCTCCAGACTTTTGAGGACCTCAACGCCATCTCAACCTATGGTTTCCGAGGAGAGgcACTTGCCAGTATAAGCCATGTTGCCCATGTGACCATAACAACCAAAACGGCTGACGCCAAGTGTGCTTACAGAGCCACCTACTGCGATGGGAAACTAAAGACCCAACCCAAACCCTGCGCTGGAAACCAGGGGACACAGATCACTGCGGAGGATCTGTTTTATAACGTGTCCACCAGGAGGAAAGCACTGAAGAGCCCCAGTGAGGAGTACTCCAGGATTGTGGAGGTGgtgagcagGTATGCCATACACAACTCTGGGAAAAGCTTTGCTGTCAAAAAGCAAGGCGAGACCATGGCAGACGTCAGGACCCTACCCAACGCCTCCATACTGGATAATATCCGTGTGGTGTTCGGCAATACAGTCAGCAGgGAGCTGATTGAAGTGGGCTGTGAGGATCAGAAGCTTGCCTATAAGCTGAAGGGCCACATCTCCAACGCCAACTACTCAGTGAAGAAGTGCATCCTCATCCTCTTCATCAATCATCGTCTGGTTGAATCGAGTGCCTTAAAAAAAGCCATTGAGACCGTTTATGCTGCATACCTTCCCAAGAACTCTCACCCATTTCTATATCTCAGCCTGGAGATTGCCCCTCATAACATCGACGTGAATGTCCACCCTACCAAACACGAGGTGCACTTCCTCCACGAAGACTGTATCATCGAGAGCGTTCAAAGACAGATAGAGAGCAAACTCCTGGGCTCCAACTCCTCACGCACGTACTTCACACAGACTTTGCTGCCTGGGCTGTCTGTCTCCACCAGCGAGGGGAAGTCTTCCTCCAACTCCACAGGGGACAGTGAGCGGGTCTACGCCCATCAGATGGTCAGGACCGACAGTAGAGCCCAAAAGCTGGACGCCTTTCTCCAGCCGGCGTCCAAGCTGGCCTCTACTCCCACCGCCAACCCTAATGGGCAGAGCAGGGGGGAACCTGTGACCACCAATGACATGGAAGAGATGGACAACGCAGAGATCCTGGAGGAACAGGCGCCAGGTGCCACAGAGGATGGGGAGGGAACCAGCCGAAATACCCCAGCTGATCTCCCCAGGAAGCGTCCCCGTGCCGGTCAGGACAAGGAGCAGGAGGACCTGACTGCTGCAGCCACAACCAGGAGACGAGCCATCAAGCTGAGCAGTGTGAAGGAGCTGAGAGATGACATCGCTGAGCACGCACACAAAGGTCTTCAAGAGATGCTTCAGAATCACTCGTTTGTGGGCTGTGTCAACCCCCAGTGGACTCTGATCCAGCACCATACCAAACTGTACCTTCTCAACACCACCAAACTCAGCCAGGAGCTATTCTACCAAATTTTGATCTACGACTTCGGTAACTTTGGCATCTTGAGGTTATCTGAGCCTGCGCCACTCTATGACCTGGCCATGCTGGCTCTGGACTCCGAGGAGAGCGGCTGGTCGGAGGAGGACGGGCCCAAGGAGGGTCTGGCCCAATACATAGTTGACTTCTTGAAGAAGAAATCTGAGATGCTGGAGGACTACTTCTCCATGGAGATCGACCAGGAAGGAAATCTCACCGGTTTGCCATTGCTGCTTGACAAGTACACCCCTCCTATGGAGGGTCTGCCCATGTTCATCCTACGTTTGGCTACTGAGGTGAACTGGGACAATGAGAAGGACTGCTTCAGAGACTTCAGCAAGGAGTGCAGCCAGTTCTACTCTATCAGGAAACAGTATGTCCTGGAGCTGGAGccgggagaggaggagcagGATGCAGAGCTGAACTCGTGGCGTTGGAAGGTGGAGCATCTCCTGTTTAAATCCTTCCGGAGCCTCTTCAGTCCCCCTAAACACTTCAGTGAGGATGGCAGCGTACTCCAGATTGCTAATCTACCAGACCTCTACAAAGTATTTGAGCGATGCTAAAACATGAGAAACACTGTCCATGGGCTGCATGTCTGTTTCAGGAAACCatttgatatacagttgaagtcggaagtttacatacaccttagccaaatacgtttaatcctagtaaaaatccctgttttaggtcagttaggattaccactttattttaagaatgtgaaatgtcagaataa

Function

GO:

id name namespace
GO:0006298 mismatch repair biological_process
GO:0043060 meiotic metaphase I plate congression biological_process
GO:0007283 spermatogenesis biological_process
GO:0051026 chiasma assembly biological_process
GO:0007141 male meiosis I biological_process
GO:0005634 nucleus cellular_component
GO:0030983 mismatched DNA binding molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K08734 MLH1; DNA mismatch repair protein MLH1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75943 lncRNA downstream 3436 61384295 ~ 61399594 (-) True G68617
TU75938 lncRNA downstream 73187 61329572 ~ 61329843 (-) True G68613
TU75934 lncRNA downstream 80225 61322148 ~ 61322805 (-) True G68609
TU75045 lncRNA downstream 90134 61312637 ~ 61312896 (-) True G67804
TU75004 lncRNA downstream 159840 61242464 ~ 61243190 (-) True G67763
TU76031 lncRNA upstream 78187 61496261 ~ 61496591 (-) True G68701
TU76033 lncRNA upstream 80600 61498674 ~ 61498984 (-) True G68703
TU76034 lncRNA upstream 81157 61499231 ~ 61499449 (-) True G68704
TU76035 lncRNA upstream 81731 61499805 ~ 61500046 (-) True G68705
TU76043 lncRNA upstream 90929 61509003 ~ 61509718 (-) True G68713
XM_021604527.2 mRNA downstream 91053 61246276 ~ 61311977 (-) False abcc2
NM_001124655.1 mRNA downstream 91589 61246385 ~ 61311441 (-) True abcc2
XR_005052321.1 mRNA downstream 685730 60715944 ~ 60717300 (-) True LOC118964986
XM_036989748.1 mRNA downstream 695984 60695135 ~ 60707046 (-) True LOC110532522
XM_036981596.1 mRNA downstream 707505 60660467 ~ 60695525 (-) True LOC110519525
XM_021606961.2 mRNA upstream 305 61418379 ~ 61429118 (-) False LOC110526202
XM_036981742.1 mRNA upstream 350 61418424 ~ 61429117 (-) False LOC110526202
XM_036981741.1 mRNA upstream 350 61418424 ~ 61429118 (-) False LOC110526202
XM_036981748.1 mRNA upstream 350 61418424 ~ 61429118 (-) False LOC110526202
XM_036981753.1 mRNA upstream 350 61418424 ~ 61429118 (-) False LOC110526202
TU74240 other downstream 941796 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 2247885 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 2617413 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 4004542 57397194 ~ 57398488 (-) True G63328
TU69997 other downstream 4340182 57052098 ~ 57062848 (-) False G63093
TU76069 other upstream 264204 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 563657 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 993448 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 1859134 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 2951828 64369902 ~ 64381356 (-) True LOC110526867

Expression Profile