RNA id: XM_021606961.2


Basic Information

Item Value
RNA id XM_021606961.2
length 2101
RNA type mRNA
GC content 0.51
exon number 14
gene id LOC110526202
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61418379 ~ 61429118 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accatggtgaccagtgagcgtTCAGGAAGGGATTGTGAATCCAACAGCTAAATTGCGTAGGTTTGAAACCATAATCTATTTTTGGCTAATTGTACTAGAGTAATGGGCTTCTAGGCTGGTTCTTCGAACTATTATTTGGACAAAATATGAGTTCACGTAGTACTAAAAGTTCAGGGAAAACTGGAACCATGGCACGGTCGAAGGGAGCAGTCCAATCATCAGAGGCAGGTGCCTCCCCCCAGCGCAGACAGAGCACTGGTGTGACCCAGGGTGGCCAGTCCAAAGGCAAAGCTGCTGCTGCCAAGACAAGACGTAACACCTCTGCCAGTGCCAAGACAGTGCAACCACCAAAGAAAAATGTAGAGCTGACTCCAGAGGAGCTAGCTGCAGTGACCATCCAGCGGGCCACCCGAGGCCTGCTGGCCAGGCGAGAGCGGGTTCGGAGACAGAAGGAAAAACAGGACTATGAAGACCTTATGGATCGCTTGGAGAAAGAGGCTTTTGTGGCACTAGTACGAAGAGAACAGGAAGAGGCGGAGTGGAAAAGGAAGAAGGAGGAGGACGAGAGAAAGGGGAAGAAGGAAGAGCAGCTTCTGCGAACTCGACTTCTGGAAGCAGCGTTCGATGGAGAGGCAGAGGAAGTGTTAGCAATTTTGAAGGAGGTCTCTGATAGGGACACAAAGCGTGGCCTTGGGTTGGATGAAGCAGGCAAACGCCAGCGGCTGCTAAACCAACTTTTCATGATTAACATCACAGATGCCAATGGCAACACAGCAGTATCAGAAGCAGCAGGTGGGGGTCAGCCGGAAGTCATCACCTTATTGGTGGAAAGGGGTGCGGACATAAACACACGGGGTGCATTTGGACGGACTCCAATCTACAGAGCTGCGTTTGGAGGCCATCTGGGGGCAGTGCAGACTCTTCTACAGCTTGGGGCAGACCCGAGGACCCATGCAGATGATGGTAGCACTCCAGAGCAGGTGGCTTCTGAAGAGGCTGTGGTTGCCACTTTACAGAACTGGGATCTGAGTGCCACTGACTCCATGCTGTCGAAGATGAaggcagaggaacagaggagggcGGAGGAAGAGGAAAAGCAGAACGAGGCGGAGACTGACCGGAGGAAACAGTGCAAACGTGCAAACCAAAAATGGCCTGTGTTTTCCCTCAGCCTAAAAGAGGAGGTGGATCAGCTCCAGAAAGAGCATGAGCGATGCCAAAGAGAGctgcAGAAGGCCTTCGTTGAGCTGAATAAGAGGATCACAGAACATGATACATGTGTGAGGAAGGGTATGGAGGAGCAGGCTAAAGTCACCTTGCTGGTGGTTCATGAAGCTGAAGATGTGTTGGCGAAAGCTCAAATAGCAGCTCATGAGGCTGCAGGGAAACTATCCCTTGCCAAGCTGACACTGAGAGAGCAGtctggtggtgATGCTGTCCTGGACCGTGGTGGGGTTCGTTGCCCGGTTCGTGACCTTGAGGAAGTTCTTATTAAAGATGTAGGCGGCAAGATCAAGCAGGATGGCagGTGGCCCCTGCTTGTGGATACCTATGGTCAGGCTGCCACATTTCTACGCTACAGAGACACTAACTACCTGGACGCCTTGCACCCTGGAGACATGCAGCCTGAGAAACTGAGACTCGCTCTACTGGGGGCCAtcagGTTCGGAAAGCCCTTGGTTATTAACATGATGGAGGTCGACTTGTTTGAGAGTGTACAGAACCAGCTAGACCAGGTGAACCCAGGGCTGAGTGAGCAGCTGATGAACAAGGAGCTCCTGCAAGAAGAGAGGTACCTAAGCCTGGTGCGCTCCACAGATGGTCCTCAGTATGCCAGAACTGAGTTCATGCTGGACCGCATTGAGAAGTTCAGCCTGGTCTTGGTGACCAAACAGCGCCACCCTCCTGATGCACTGCTCACAGCATTCTATCCCATCCATGTCATGCTGCCGGAACCCAAAATATGACCTTGCTGTGGCTCAAAAGTGTaaatactgttgttgttgttgttttaccacaaaacatgttttactaatataaaatatatgacaCCAAAAAATAAGGATTTTATTTTTGGTATGATTATTATGTAAATGATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75943 lncRNA downstream 18785 61384295 ~ 61399594 (-) True G68617
TU75938 lncRNA downstream 88536 61329572 ~ 61329843 (-) True G68613
TU75934 lncRNA downstream 95574 61322148 ~ 61322805 (-) True G68609
TU75045 lncRNA downstream 105483 61312637 ~ 61312896 (-) True G67804
TU75004 lncRNA downstream 175189 61242464 ~ 61243190 (-) True G67763
TU76031 lncRNA upstream 67143 61496261 ~ 61496591 (-) True G68701
TU76033 lncRNA upstream 69556 61498674 ~ 61498984 (-) True G68703
TU76034 lncRNA upstream 70113 61499231 ~ 61499449 (-) True G68704
TU76035 lncRNA upstream 70687 61499805 ~ 61500046 (-) True G68705
TU76043 lncRNA upstream 79885 61509003 ~ 61509718 (-) True G68713
XM_021606940.2 mRNA downstream 305 61403030 ~ 61418074 (-) True mlh1
XM_021604527.2 mRNA downstream 106402 61246276 ~ 61311977 (-) False abcc2
NM_001124655.1 mRNA downstream 106938 61246385 ~ 61311441 (-) True abcc2
XR_005052321.1 mRNA downstream 701079 60715944 ~ 60717300 (-) True LOC118964986
XM_036989748.1 mRNA downstream 711333 60695135 ~ 60707046 (-) True LOC110532522
XM_021607047.2 mRNA upstream 112566 61541684 ~ 61544247 (-) True LOC110526243
XM_036938063.1 mRNA upstream 115560 61544678 ~ 61548916 (-) False dnajc12
NM_001160542.1 mRNA upstream 115567 61544685 ~ 61548656 (-) True dnajc12
XM_021607145.2 mRNA upstream 223190 61652308 ~ 61676927 (-) False tial1
XM_021607161.2 mRNA upstream 223190 61652308 ~ 61676935 (-) False tial1
TU74240 other downstream 957145 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 2263234 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 2632762 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 4019891 57397194 ~ 57398488 (-) True G63328
TU69997 other downstream 4355531 57052098 ~ 57062848 (-) False G63093
TU76069 other upstream 253160 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 552613 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 982404 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 1848090 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 2940784 64369902 ~ 64381356 (-) True LOC110526867

Expression Profile