RNA id: XM_021607047.2


Basic Information

Item Value
RNA id XM_021607047.2
length 648
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110526243
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61541684 ~ 61544247 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTTCATAAGACCGTTACTTTGTGAGTGGACcgttgactctgtcaatcaagtCAAGGTTGGAAATAAATGGGGTCATTTCAGTCCAGCAGATTGTTCAGATCACACGCGGTAGTTTAAGCGAAAGTGAATTCATTATGGCAGGCAGGTTTTTACTCCGTACCTGTACAACCTTGCAATTGGCAAGAAACAATGTTGTGGCAAGATCACTGCCACGCACTATGACCACATTAAAAGGGATTCCAACCGATGAGGAACAGGCTACTGGACTCGAGCGACGTGCCTTGCAGGCACTGAAGAAAGGAAAGGATCCTTGGAGCATTCTGAAACCCAAGGAGTATGCTGGAACCAAAGAAGACCCTCACATTGTCCCAGGCATTAGTGACAAACGGCTGGTAGGCTGTCTGTGTGAAGAGGACAACACTGCCATTGTGTGGTTTTGGCTCCATGAGGGGAAGCCCCAGCGCTGTCCCGAATGTGGGTCCCACTATCAGTTTGTCCGTCATGAGCTGCCCCACTGAAACAGCCACCAAGCTCCTTGCCACTGGACCAGGATAACCTGCCTCATTAACTCACCCTCTACCCTGAACAATGTGTGCATTTCAGCTGATTAATATGTAGATTAACATTAAAATACTGTCAATTTGAA

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005740 mitochondrial envelope cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
K02265 COX5B; cytochrome c oxidase subunit 5b

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76043 lncRNA downstream 31966 61509003 ~ 61509718 (-) True G68713
TU76035 lncRNA downstream 41638 61499805 ~ 61500046 (-) True G68705
TU76034 lncRNA downstream 42235 61499231 ~ 61499449 (-) True G68704
TU76033 lncRNA downstream 42700 61498674 ~ 61498984 (-) True G68703
TU76031 lncRNA downstream 45093 61496261 ~ 61496591 (-) True G68701
TU76075 lncRNA upstream 17678 61561925 ~ 61562283 (-) True G68742
TU76077 lncRNA upstream 20466 61564713 ~ 61564933 (-) True G68744
TU76078 lncRNA upstream 20986 61565233 ~ 61565457 (-) True G68745
TU76079 lncRNA upstream 21235 61565482 ~ 61565739 (-) True G68746
TU76080 lncRNA upstream 22306 61566553 ~ 61566831 (-) True G68747
XM_021606961.2 mRNA downstream 112566 61418379 ~ 61429118 (-) False LOC110526202
XM_036981741.1 mRNA downstream 112566 61418424 ~ 61429118 (-) False LOC110526202
XM_036981748.1 mRNA downstream 112566 61418424 ~ 61429118 (-) False LOC110526202
XM_036981753.1 mRNA downstream 112566 61418424 ~ 61429118 (-) False LOC110526202
XM_036981760.1 mRNA downstream 112566 61418424 ~ 61429118 (-) False LOC110526202
XM_036938063.1 mRNA upstream 431 61544678 ~ 61548916 (-) False dnajc12
NM_001160542.1 mRNA upstream 438 61544685 ~ 61548656 (-) True dnajc12
XM_021607145.2 mRNA upstream 108061 61652308 ~ 61676927 (-) False tial1
XM_021607161.2 mRNA upstream 108061 61652308 ~ 61676935 (-) False tial1
XM_021607152.2 mRNA upstream 108061 61652308 ~ 61676936 (-) False tial1
TU74240 other downstream 1080450 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 2386539 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 2756067 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 4143196 57397194 ~ 57398488 (-) True G63328
TU69997 other downstream 4478836 57052098 ~ 57062848 (-) False G63093
TU76069 other upstream 138031 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 437484 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 867275 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 1732961 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 2825655 64369902 ~ 64381356 (-) True LOC110526867

Expression Profile