RNA id: XM_036938063.1


Basic Information

Item Value
RNA id XM_036938063.1
length 1162
RNA type mRNA
GC content 0.42
exon number 5
gene id dnajc12
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61544678 ~ 61548916 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTTGTGAccaagtagttgaacatgttattactccaacgtCGTGAAAGTCACAAACAgacacgttttcattttcgtGAAAAATAACTTTATATCGAAGGAGTGCGGTTTGAGTTAACGGCATTCACATGCGCAGTTCGGCGCAAGAGCCGTTTCTGCGCATGCACGTAGCTAGCCAATGTGACACCTACAAGTGTGATCGGGGAGAAGCAATTTTAGCTTATCTTCATACTGTACCTACTGTCTGTCATCTTTGGTTGCGGCGGGAGCGACACTTCAGCACATCGATgacgtcaacaacaacaaaatgtatcGTACAGAACAGATTGCCAATGAATACAGAGTAAGGGCCTTGGCATGCCATCCAGACAAGCACCCTGATAATCCAAGAGCAGtgGAAGAGTTTCAGAAGTTGCAGGAAGCCAAGGAGGTTTTGTGCCATGAAAAGAGCAGAAGAAACTATGATGTATGGAAAAGAAGTGGAATTACCATACCATTCCATGGCTGGCTAGCCCTTGGCGACTCTGTCAAAACTTCAATGCATTGGGCTGTGAGGACCAAAAAGGAGCCCATGCTGGAGAGCTCTAAAGTAACATTCCCTAACAGTTCCCAAGACAGAGACTGTACTGACCACGAGTCACCAGAGATGCCTTCCCCAGATGCAGTGCCATCTTCAAGTGACTACTGCCATCGCCATTTTCGCTGGGCTTCCGACTCTCCATCCAGTCTTCTGCGGAAATTCAGAAATTATGAAATCTAAATGGAAAGATAAAATTATCAGCCCTGTCTATTTCCTTGTGAATAATGTTGCTTGTTGGTTCCCACACTCACATTAATTGTATGGAATTGCTAAACTAATTGTCTTTTATCTATCAGGTGTAACTTATTAGACCCTCTATAGAAAATGTATACTGAAAATACCCTAGTTTTGCCATGGCCTAGGCTCTAGGGTATGGGGCATATATATTATTTGTGTACGGTCTATGGCATGGAGCCTGGAATGGACCTATTTAGCTCTTTATCAAAATGTCCCAATAGATGTCATTATGTGAAGTATAATATTTTTGTAGTGTTGTATCCTTGTACATGGTTGCCTTTTTAAAATTATGTAAATGCTCTGGATGGTATTTTCACATCTAATAAATGTTATGTATTCAATATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76043 lncRNA downstream 34960 61509003 ~ 61509718 (-) True G68713
TU76035 lncRNA downstream 44632 61499805 ~ 61500046 (-) True G68705
TU76034 lncRNA downstream 45229 61499231 ~ 61499449 (-) True G68704
TU76033 lncRNA downstream 45694 61498674 ~ 61498984 (-) True G68703
TU76031 lncRNA downstream 48087 61496261 ~ 61496591 (-) True G68701
TU76075 lncRNA upstream 13009 61561925 ~ 61562283 (-) True G68742
TU76077 lncRNA upstream 15797 61564713 ~ 61564933 (-) True G68744
TU76078 lncRNA upstream 16317 61565233 ~ 61565457 (-) True G68745
TU76079 lncRNA upstream 16566 61565482 ~ 61565739 (-) True G68746
TU76080 lncRNA upstream 17637 61566553 ~ 61566831 (-) True G68747
XM_021607047.2 mRNA downstream 431 61541684 ~ 61544247 (-) True LOC110526243
XM_036981741.1 mRNA downstream 115560 61418424 ~ 61429118 (-) False LOC110526202
XM_021607145.2 mRNA upstream 103392 61652308 ~ 61676927 (-) False tial1
XM_021607161.2 mRNA upstream 103392 61652308 ~ 61676935 (-) False tial1
XM_021607152.2 mRNA upstream 103392 61652308 ~ 61676936 (-) False tial1
XM_021607168.2 mRNA upstream 103392 61652308 ~ 61676942 (-) True tial1
XM_021607227.2 mRNA upstream 168538 61717454 ~ 61733606 (-) True LOC110526339
TU74240 other downstream 1083444 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 2389533 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 2759061 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 4146190 57397194 ~ 57398488 (-) True G63328
TU69997 other downstream 4481830 57052098 ~ 57062848 (-) False G63093
TU76069 other upstream 133362 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 432815 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 862606 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 1728292 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 2820986 64369902 ~ 64381356 (-) True LOC110526867

Expression Profile