RNA id: XM_021607034.2


Basic Information

Item Value
RNA id XM_021607034.2
length 3842
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC110526236
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61549181 ~ 61561338 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCTGTCGACCGCGGAAGAATGTTTTACCACAGTACACAGCGGCTTTATCAGCTGAAGATGGCGGACGGGGAGAATATCCTTGTTGGAGCCAGTTCCAGCACTTCAACTAATGAAGAACCAGATTCAAAAAAGGCCAAAATGAGCATGGCCATAGAATGTGGACTCAAAATTGTTCAGACTAAGCAAGTTACGTATGGGCCAGAGGCTGGTGAGAGTTTGGCGGCGGCGATTTCTGCGCAGCCAAAGGAGAAGGAGATTGAGCCGGTGATGTCGGTAGGACAGGCCTCAGCAGCAGCACCAGGCGGAGACAATGGGCTGCTGGTCTTCGAGCCTCAGGAAAGTGTAGTGAATTTAGACAAGGCGTCTGGACCCACGGCGGAGCCTGCAGACGGTGTCAATGAGGATGATGACCGATCCTCACATGCAAGTTCCAGTGACTGGACACCTCAACCACAGATAGGTTCCTACAGTTTTATCCAGCAACACATCATGAGAGAGACCGATCCAAGAACAATATTGAAAGACTTGCTTCCTCCAGAGACTGTGCTTCCACCGGACTTGGATGACATGACGCTGTGGCAGATCATCATCAACATTTCGGAGCCTCCTAAAAGAAAGAAGCGGAAAGACATAAACACCCTGGAGGACGTGGTTCGGATACTCCATGAAAGCAAAAAGATCCTTGTGCTTACTGGTGCTGGAGTGTCTGTTTCTTGTGGAATACCAGACTTTCGATCCAGAGATGGCATTTATGCAAGGCTTGCAATAGATTTCCCAGATCTTCCAGACCCTCAAGCAATGTTTGATATAGAGTACTTCAGAAGAGACCCAAGGCCCTTTTTCAAGTTTGCTAAGGAGATCTATCCTGGACAGTTCCAACCTTCGCCCTGTCACAAATTCATATCTATGCTGGGCAAGCATGGGAAGCTACTACGCAACTACACCCAAAACATTGACACTCTTGAACAAGTGGCTGGGGTTCAGAGGATCATCCAGTGTCATGGGTCTTTTGCAACCGCTTCCTGTCTCATCTGTAAACACAAGGTTGACTGTGAGGCTGTAAGGGAAGACATTTTTAATCAGGTTGTCCCTCACTGTCCACGGTGTCGAGATATTCCCCTGGCGATCATGAAGCCAGATATTGTCTTCTTCGGAGAGAATCTTCCAGAACTGTTCCACAGAGCAATGAAGCAGGATAAGGATGAAGTGGACCTCCTTATCGTCATTGGGTCCTCACTGAAAGTGCGACCTGTGGCTCTCATCCCAACCTCCATTCCTCATGAAGTGCCTCAAGTCCTGATTAATCGGGAGCAGCTGCCTCACCTCAACTTTGACGTGGAGCTACTTGGGGACTGTGACGTCATCGTTAACGAGCTCTGCCATCGGTTGGGCGGAGACTTTGAGCAACTGTGCTACAACTCCTTAAGACTCAGTGAGATCACAGAGAAACCCCCGCGGTCACAGACACCTTGTGAGGCCTTGTCCACTCACAGTAAGCCAACAGAAGAAGAACAGAAGACCCGTCACACAGACTCATCGTTCGGTGCCTCAGAGGAGACGGACACTCATACGGTCACAGACACTCCAGAAGGCGACAGAGTACCAACAGAACCTTGTCCGACTGCGCAGAATGACACAGACGCATCTGAAGTCGATGGAGTACCATCGGTGCCCTATCCAAAGACAAAGATTGTCTCTGACACGCTTGAAGTTGGAGTACCAACAGAACCCTGTCCAAAGACTCAGAATGTCACAGGCACCCTGGAAGTCAACAGAGTAGCGACAGAGCCCTGTCCGAAAGACACTCTTGAATTCGATGCAGTGCCATTAGAGCCTAGTCCAAAAGTGCAGATTGTCCCAGAGGCTCCAGAAGAGCCTTGTTCAAAGACTCAGTCCCCCAATGAGGAGAGAATGGAGAATTCAGATTCTCCGTCAGCGGACACGCAAAGGGAAGAACCCTCTGGATTAAATGACCAACATGTCAACCTTGAAGTTCGCCGACGATGCTGGATGAGTCGAATCAGTCGAAGTCCTATCAGCAAGCGCCTTGAGACTTCTCAATACCTATTCCAAGCACCAAATCACTACATCTTCCACGGGGCAGAAGTGTATTCCAACTCGGAGGACGAGACATCCAGCTCCTGCGGGAGCAACAGTGAGGACTCcagcctggaggaggaggaggatgacgaGGAAGAAGACAGTGATGCCGAGGAGGACCAGAGCACACCAGCAGAGGAGGGCGAGGGCTGCCTCATTGACATAGTAACACACAAGCAAGCCTGCGAGGGCACTTCGAGTGTGAAGCAGATGGAGAGTACAGACAAAAATGTTCAGAACACCACAGACCTTTAGAAACACAAAGCACTTGCAgtcttttttaaaaatatttgttttgtatATTTTTGTCCACCCACAGCACGTCCTATTATACATTTTTCTTAAAGTCTAGATTGCGTTGATACTTTTGCATGCATGTGCTGAAAATTCGTTCTTCGTTCTCTTCTGTCTGACCACATTAACAAGCTGCAGGTGGTTTGTTTACACGTTTTGTGTACTACAATTAAATAAACAGCAGCTCAACTCAACCAATCCACTTCAGAAGGTTAAtggtgaagaatgcaacaaagaaaAAACATAGACCAAAGAAcaattctctcccccccccccaatacaccCAACAGTTTTTGCATTAAATCTTAAAAACCTTGTCTTTGACTTTCCTACCACCTGAAGTGTAAAGAATATATTGAGCGGTGGCATTGTTTTCCTTACGATATTTGGCAGCTACTTTTTACAGTCAAGCTTTTATTATTTTTGTACTTTGTAACATGTAAGAGACACACTCAGCAAAGAGCAGGTGATGGTTTTCTAAATGAAATTGAAAACGTTATACATTGTGCAAACATAAAGCCTTAACTGTGTTCAATGAGCTTTCATTGGAGCAAATGTCACTTTTTTCTTCCTTTTCAGCAGTTTGACGCGTTTGTTCATGTTTCCTCGGTTGCATGAGCTATTTGGTCGATGTGACTGATTTGCTCCTATTCATTCTTTCCTGAGAAATGCCCAGCCCTAACACTGAGACCCTGTAGAGCTATACAAGTGTTCTGGGATACGTTTAATATGAGCCAAATTTACTCTTTTAAGCAACTCATTCGAATGAaattaaaatatttgttttgttttgagcTTGATCTTGGTAGTTAAATTGCTAAAATGTTCATTCATAGTAGGCCTTTTCCTTATTTTCATGAGAACACCACAGAAACAGTCTAATTAATCACAAGGTGTGACAACACACTGTTGTGTAGAAAACGGATATAGATATGAGAGTTGCATGCTATTTGACATTTGATGTCCAAGTTTAGTTTGAGAAGACCACTACAGGTAAGTGCATGCAGTTCAGATACTGCAGCAGCGCCATTGGAGCTGGTTTTACGCAAATGGAGGGACAACATTTGCATGGATGAACTAAGATGATTACAATTACATTTAAGAGTTCTTATAATCAGTATGCTGATGTGTGAGAGTCGGCTTTTGTTATGCTCTGCagtgtttattttttacatcaaaacatttatttttcatgTTTTCTTTAAAAATGTATCTGCTATATTTATATTTGGTTTAATAACACCATACACCAACAAATAGGCCATAATATAGCACATAGTCTCATTTGAGGTTACCCTTTATGTAAATATGACTGCCTGTATTTAATTGATAATGAATACTGTATTAACAGTATAGGCCTATGTTTTTAAAGTTCTTATGCCTGCAAAAGTCACAGAAAGAGTTGTGTTTTTGTCTAAAATTACTAATAAAAATTCGGTCAAAATG

Function

GO:

id name namespace
GO:0001944 vasculature development biological_process

KEGG:

id description
K11411 SIRT1, SIR2L1; NAD+-dependent protein deacetylase sirtuin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75120 lncRNA upstream 4981 61541521 ~ 61544200 (+) False G67870
TU75122 lncRNA upstream 4981 61541697 ~ 61544200 (+) True G67870
TU75154 lncRNA upstream 37346 61511635 ~ 61511835 (+) True G67897
TU75106 lncRNA upstream 120617 61423275 ~ 61428564 (+) True G67856
TU75104 lncRNA upstream 131454 61417130 ~ 61417727 (+) True G67855
TU75164 lncRNA downstream 9114 61570452 ~ 61571716 (+) True LOC110526250
TU75179 lncRNA downstream 23126 61584464 ~ 61584663 (+) True G67921
TU75196 lncRNA downstream 32239 61593577 ~ 61593781 (+) True G67938
TU75197 lncRNA downstream 32556 61593894 ~ 61594121 (+) True G67939
TU75208 lncRNA downstream 54055 61615393 ~ 61615668 (+) True G67950
XM_021607008.2 mRNA upstream 8244 61517953 ~ 61540937 (+) False herc4
XM_021607015.2 mRNA upstream 8244 61518358 ~ 61540937 (+) True herc4
XM_021606997.2 mRNA upstream 43876 61501014 ~ 61505305 (+) True LOC110526212
XM_021606975.2 mRNA upstream 60754 61437607 ~ 61488427 (+) False LOC110526206
XM_036981774.1 mRNA upstream 60754 61437607 ~ 61488427 (+) False LOC110526206
XM_021607058.2 mRNA downstream 274 61561612 ~ 61571769 (+) False LOC110526250
XM_021607066.2 mRNA downstream 277 61561615 ~ 61571769 (+) False LOC110526250
XM_021607077.2 mRNA downstream 11463 61572801 ~ 61623278 (+) False mypn
XM_036981823.1 mRNA downstream 12262 61573600 ~ 61623278 (+) False mypn
XM_036981826.1 mRNA downstream 12262 61573600 ~ 61623278 (+) False mypn
TU75047 other upstream 233929 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 1607117 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 2224052 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 2848802 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 2883275 58665334 ~ 58665906 (+) True G64315
TU75188 other downstream 168427 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 1713625 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 3248251 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 4354397 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 4354397 65915735 ~ 65922285 (+) True LOC110527164

Expression Profile