RNA id: XM_021607168.2


Basic Information

Item Value
RNA id XM_021607168.2
length 2615
RNA type mRNA
GC content 0.41
exon number 12
gene id tial1
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61652308 ~ 61676942 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGCGTATTTTACCGAGATGTTATAGTATAAGACTAGCCTACTCGAGATATCTGATTGATTTTATTTTAGTGCTGACTCAAGTCCCCCTGTAGACTGCATGCGCATGGGCATGAGTCGGCTTCCTGACTCTCCGGTTAGCGCCATTTTCTTCCTCTTAGTTAGCTAGCTTAGCTACGGCATAAATACATTGATTAGGCCATCTTCTTGTTTATTTCAGCATACTCAGTTAGTTAGTCGGCATTCATACCAATCGATTTTTGAACATGGAAGACGAAAGCCACCCCAAAACGCTGTATGTTGGTAACCTGTCCAGAGATGTAACAGAAATTTTGATTCTTCAGCTGTTCACCCAAATTGGACCTTGCAAAAGTTGTAAAATGATCACTGAGCAGTCAAGCAATGACCCGTATTGCTTTGTGGAGTTCTTTGAACATAGAGATGCTGCTGCTGCCCTAGCAGCCATGAATGGGAGGAAGATATTGGGAAAGGAGGTCAAAGTAAATTGGGCCACCACTCCAAGTAGCCAGAAGAAAGATACATCAAATCACTTCCATGTGTTTGTGGGAGACTTGAGCCCTGAGATCACCACTGAGGATATCAAAGCTGCATTTGCACCTTTTGGGAAAATATCGGATGCTCGTGTTGTGAAGGACATGACGACAGGAAAATCTAAGGGGTATGGATTTGTGTCCTTCTATAACAAACTGGATGCAGAGAATGCCATCGTGCACATGGGGGGACAGTGGTTAGGAGGACGGCAGATCAGGACCAACTGGGCAACTCGCAAGCCACCCGCCCCCAAAAATGTGCAAGACAATGGCTCGAAGCAGCTGAGGTTTGAAGATGTAGTGAACCAATCCAGTCCCCAGAACTGCACCGTGTATTGTGGAGGAATCCAGTCAGGACTGTCAGAGCACCTCATGCGACAGACATTCTCACCCTTTGGACAAATAATGGAAATCCGAGTTTTCCCAGAGAAAGGTTACTCTTTCATCAGGTTTTCCTCCCATGAAAGTGCTGCCCATGCAATTGTCTCTGTAAATGGAACGTCCATTGAATGCCACATAGTGAAGTGCTACTGGGGCAAAGAATCCCCCGACATGGCCAAAAGCGTACCACAGGTGGAGTACGGTCAGGGTCAGTGGGGACAGTGGAACCAAATGTATGGGAGCCCCCAGGCCCAGCAGTATGGGCAACAGTACATGGCAAATGGTTGGCAAGTGCCTTCTTATGGAGTGTCTTATGGACAGTCATGGAATCAGCAAGGATTTGGTGTAGAACAGTCCCAGTCCCCAGCCTGGGTGGGAGGGTTTGGATCCCCGGCGCCGTCCCAGCCCGGTCCTGTGATGCCCAACCAGGGAAACTTCAACATGGCTGGCTACcagacacagtgatcaggctctCACTCTCATCAGTGGGAATCAGTGGACTTTCAGTTAGGAGAACATAAAGTAATTAACATTGTAATCATCTGGAGAGATTGTGTTTTTAAAGCAGAGAAGATCAGGAACAACAATAGTTTACCTCTTTTGAGGAAGCAAATGTTATTTATAAAGACAGGTAGGGAGTTGTTTTTATTGGCTGAAGTTGTGTTGTGTACAAATTAAATGTCAAGAAGAAGTATAGGAGAGAAAAAAACTCGGACTGAATTTTCACGCTTTTATATAGGGGATATCTTGGTAAAGATTTTTTTGATGAGTTTTAGTTGAACACTTAATGTAGTTAAATACAGACTTAATTTCATTTATATACCCTAGTTTGTCATAGGACATTGCACAGGTACATATAGAAAGAAGTTGTACATTTTCAGAACATAATGCTCTTTAAATTGTTAAGAGTTTCTGATTTTTAAATCACATTCTGAACATTTGATAGATATGAGTGAACACATTTTCTGTCTCCTGCTTTAAGACGTTTAGCATTTTGGCCCAACAAAGCACGTTTAAAAAGCACTTTTAGGGTCAAATTTGCTTTAAATCTTCAAAGGCATATGGATTTGTGCCATTATGtatatttacatttatttacTTCACATTCTTCATCTCCCGACATTGTACTAGCTGAGTTTCTTGATAATGCGTGTAAATCTCTAtgctatttttttttgttttttttgcttaTACCTGTAAATGTCACGTATAATGGAGAAGGGTCATGGAAGGCCAAACGTGTATATAACCCTCGAACACCTGATTTTGAATTGAGGGTTTCCAAGCATGTACTCTTTAGTATCACAGGAGCTCCACAAACCTAATgttgtatatactgtagatgaGTGTGCAATGCAGGGCTGACATATTGAATCTATTCAATATAATTTACAAAGAAGCCTTAATTTAAATGTCAGTTACTGCACCAGTTTATTTTATTCAAGGAAGCTTCTTAGAAGGTTGAACTCTAGATTTTAGTGATGACTGATGATTTTATCATTTTCAAGTTGTGCCATTTTCAGCTAATAGCAGGAGACGAGTAATGAGCATTTCCTGGAGACATTTTGAGGGTGAATTGCacgtttttgaaaatgtattatcttGGTTGCTCAAAGTATTGAATGTAAAATGGCAATTGTTTTTAATGACGAATAAAGTTCAGCAATTGACAATTCAATTTTCAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13201 TIA1, TIAL1; nucleolysin TIA-1/TIAR

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76157 lncRNA downstream 4145 61647938 ~ 61648163 (-) True G68808
TU76136 lncRNA downstream 32258 61619498 ~ 61620050 (-) True G68787
TU76134 lncRNA downstream 33063 61619040 ~ 61619245 (-) True G68785
TU76133 lncRNA downstream 34643 61617204 ~ 61617665 (-) True G68784
TU76131 lncRNA downstream 38649 61612401 ~ 61613659 (-) True G68782
TU76073 lncRNA upstream 876 61677818 ~ 61678103 (-) True G68740
TU76074 lncRNA upstream 1249 61678191 ~ 61679786 (-) True G68741
TU76070 lncRNA upstream 4272 61681214 ~ 61682107 (-) True G68737
TU76226 lncRNA upstream 116057 61792999 ~ 61793359 (-) True G68869
TU76280 lncRNA upstream 180578 61857520 ~ 61944106 (-) True G68921
XM_036938063.1 mRNA downstream 103392 61544678 ~ 61548916 (-) False dnajc12
NM_001160542.1 mRNA downstream 103652 61544685 ~ 61548656 (-) True dnajc12
XM_021607047.2 mRNA downstream 108061 61541684 ~ 61544247 (-) True LOC110526243
XM_036981753.1 mRNA downstream 223190 61418424 ~ 61429118 (-) False LOC110526202
XM_021607227.2 mRNA upstream 40512 61717454 ~ 61733606 (-) True LOC110526339
XM_021607241.2 mRNA upstream 69861 61746803 ~ 61755455 (-) False csgalnact2
XR_005052459.1 mRNA upstream 69867 61746809 ~ 61755455 (-) False csgalnact2
XR_002473934.2 mRNA upstream 70911 61747853 ~ 61755455 (-) True csgalnact2
XM_036981852.1 mRNA upstream 81428 61758370 ~ 61789951 (-) False ret
TU74240 other downstream 1191074 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 2497163 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 2866691 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 4253820 57397194 ~ 57398488 (-) True G63328
TU69997 other downstream 4589460 57052098 ~ 57062848 (-) False G63093
TU76069 other upstream 5336 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 304789 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 734580 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 1600266 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 2692960 64369902 ~ 64381356 (-) True LOC110526867

Expression Profile