RNA id: XM_021607227.2


Basic Information

Item Value
RNA id XM_021607227.2
length 2878
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC110526339
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61717454 ~ 61733606 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCTGTGGCTGAGCTACTGCAATTAAACAATACAACGTTTAACACAAAGTTTCTGATCGACTTTCTTCTCCAGTCGACGGTCAACATGAGTAACATGGATATTATTTCAAATATAATAATATTACAGATATTGTCGAAAATATCCCTAAAAAGATGCAGCGGCGACGACGAGGGCGTTGCGTTCTCATGGCTAGTGACGCAAAGTTCCCGCCAGTGTGAACGCGGACTGAGCTGTGcgctgctggagagagagaaagagaaagagagaaaagttaTTGAGGAATAACTATTGATATTCTCTGTCGTTTATTTTATCGGCCTTCCAAAAAAAGATTTACTGGTAAATAATGCCGTCGTCTCACGATTGGATAAACAAGCCATTGGGCGTTGTCGAAGCGATGTTTGCCCAGAGCAACTCTAACCCAGAATGGGAAGCAAAAGTGTTGGAATACTTCAAAGGGCAACTGAAGGAAAAGGAATCTCATAGCTGGGTTCCTTCCCTAAATGATGTGCCCTTGCACTACTTGAAGCCCAACAGCCTTGTGAAATTCCGTTGTTTGGTCCAAGACATGTTTGACCCAGAGTTTTACATGGGAGTGTATGAGACTGTGGACCCCTCAACCAAGGCCAATGTGTTGAGATGTGGGAAGTACAAAGATGTCACAGAATGTGGGGTGGATTTGAACTCCAGAAACACTGTgactgcagagagacagaccTTCTATTGTGTCCCTATTCCAGGAGAGAGCCCTTGGGCTAAAGAGAGCTATGGCTGTTCTAGTCAGGCAAGAGTTGTCCCATCCACCTCCTATGTCCCAAGCAGACAGAAGCGCAGTTACGAAGAGGACGACGACATGGACACACAACCCCAGAAGCAGAGAGAACCACACACAGAGCCCCATGGCAACGGGGACTCCAAGCGGCAGGAGACCGAAGCCCCCTCCAGCCAGACAACTGCCCCCTCAGACTGTTCCTCCCATCTGGACCTCAACTTTCCCCTGCCAGGGGAGAGGGGCCCAGCCTGTCTAGTGAAGGTCTATGAGGGGTTGGACAGCTTCAAACTGAACGACACACTGGAGATCTACGGGATTCTCTCCGTCAACCCAGTCCTGACTGTGCTGGGCGAAGAAAAAGACCCCTCGTTGTTGCTGCTAAACCCCACCGAGAGTATGGAGACTCCAGAGGAACAGAGAGCTCATGACCCCCCTGCTTCCCTGGTTCCCCGTCTCCACATGCTGTACGCCCGCCCCCTGCAACACAACAACCCTCTTCTGCCCTCTGCTCCCACAGAGGACCAAAGCGCCTTTGTATCCTCTTTCCTGGTTGAGATGGCATCGGTGAGGGCAGAGCTGCTCGCTTACCTCACCCATGTTCTTCTGGGAGACGGACTGGCTGCCGAGTACCTCTTACTGCACCTCATCTCTAACGTGTATACCAGGCGGGATGTCCTGCCTTTGGGTAAATTCACCCTGAATCTGAGTGGCTGCCCGCTCAACTCCTACACAGAGCGACTCTATCAGATCGTCCAACAGCTGGTGCCTTGTTCATACCGTCTCAGTATGAGCCTCCACACAATGAACAGCATGCGTCTGGTGCCTAAGAAGGACTATGTGGCCAACCGGCTGGTGAGTGGAGCCTTGCAGCTGGCCAGgaacacctccctcttccttgATGAGACGCAGCTGGAGCAGGGTCAACTGGACAGCTCAGGTGTGCGGAacatcactgccctggggaacCTGATCTCTTGGCAGAAGGTTGATTATGACTTCAGCTACCACCAGATGGAATTCCCCTGCAATATTAACGTGCTCGTCACATCAGAGGGCCGATCGCTGCTGCCGTCAGACTGCCAGGTGCCCCTACAGCCCCAAGTGACCCCACCCAACATGGAGGAGTATCTCACTACCATCCACATGGCACAGTTCACCTCACAGATTAACAAGTTCCGTGTGTACCTGAGTCTGGCCCGTACCCTCGACTACAGCATCTCTGATGAGGTCACCAAGGCAGTTGAGGATGACTTTGTTGACATGCGCAAAGATGACCCCCAGAGCGTCACCGCAGAGGACCTGCATAGGATGCTTGTCGTCGCAAGGTTGCTCTCCTTAAGTTTGGGACAGACCACCCTTTCCCGAGATGGATGGATGAGAGCCAAGCACATAGACATGCTTCGCAGGAGCAGGACCGAACAACAGAAGAGTCTCAATGGCAACGAGCCTTAATCACAAACACCCCATCCGGTAtggatataaaaaaatatgttatgTGGAACAAACATTTTTCATTTTGATACCAGAAGAGCAATTTCTTTTTTGAAAAgttcaacttaataaaacttATGTACAAAAGTTTTTGTTCTTTTTGCGTAGCACTGGGATTGTATTTAGCTTTTTTTGCTTCAGTGTTGGGAGATCAGGTTAAGCTTTTTATCAGTTATATTTTCAATTTCTTGATAAGAACATTTTAAAATCCTGGCAAAATAAATGACAGGACTAATTGTTACTGTGGGATGTTTTCAGTGCTTTGTATATTACTGCCTTGAACTCCATTGAAGTACTGTTTACGTTTGGGATTCAATCCAGGTAAATTTGAACACAACGCAGAATATGCTAAACCAATGTTGACTTTCCTCCCCTTACTCTAGACCAAATGTTGTAGGTTTTAGATGAACATGTTGGATCTGGTACTGAAAGTATATGTAAATAGGGCATTTTGAGATCATATTTTATTCTCCCCATCTTATGCCTGAAAGTTCTCAGGAGTCAATACATTGATCATGATTTGCCAAATGACCTTCCCCAAAATGTAATTCTTGCTTTATGGGATCAGTTTGTGAATGATTGTTTGACTCATTAAAATATGGATAGCTTGCCA

Function

GO:

id name namespace
GO:0000084 mitotic S phase biological_process
GO:0007062 sister chromatid cohesion biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0003682 chromatin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76070 lncRNA downstream 35347 61681214 ~ 61682107 (-) True G68737
TU76074 lncRNA downstream 37668 61678191 ~ 61679786 (-) True G68741
TU76073 lncRNA downstream 39351 61677818 ~ 61678103 (-) True G68740
TU76157 lncRNA downstream 69291 61647938 ~ 61648163 (-) True G68808
TU76136 lncRNA downstream 97404 61619498 ~ 61620050 (-) True G68787
TU76226 lncRNA upstream 59393 61792999 ~ 61793359 (-) True G68869
TU76280 lncRNA upstream 123914 61857520 ~ 61944106 (-) True G68921
TU76308 lncRNA upstream 171868 61905474 ~ 61905894 (-) True G68949
TU76268 lncRNA upstream 201907 61935513 ~ 61936398 (-) True G68910
TU76275 lncRNA upstream 231146 61964752 ~ 61965216 (-) True LOC110526377
XM_021607168.2 mRNA downstream 40512 61652308 ~ 61676942 (-) True tial1
XM_021607152.2 mRNA downstream 40518 61652308 ~ 61676936 (-) False tial1
XM_021607161.2 mRNA downstream 40519 61652308 ~ 61676935 (-) False tial1
XM_021607145.2 mRNA downstream 40527 61652308 ~ 61676927 (-) False tial1
XM_036938063.1 mRNA downstream 168538 61544678 ~ 61548916 (-) False dnajc12
XM_021607241.2 mRNA upstream 13197 61746803 ~ 61755455 (-) False csgalnact2
XR_005052459.1 mRNA upstream 13203 61746809 ~ 61755455 (-) False csgalnact2
XR_002473934.2 mRNA upstream 14247 61747853 ~ 61755455 (-) True csgalnact2
XM_036981852.1 mRNA upstream 24764 61758370 ~ 61789951 (-) False ret
XM_036981853.1 mRNA upstream 24764 61758370 ~ 61789952 (-) True ret
TU76069 other downstream 31146 61682278 ~ 61686308 (-) True G68736
TU74240 other downstream 1256220 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 2562309 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 2931837 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 4318966 57397194 ~ 57398488 (-) True G63328
TU76326 other upstream 248125 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 677916 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 1543602 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 2636296 64369902 ~ 64381356 (-) True LOC110526867
TU82292 other upstream 5085238 66818844 ~ 66822816 (-) False tjap1

Expression Profile