RNA id: XR_002473934.2


Basic Information

Item Value
RNA id XR_002473934.2
length 1913
RNA type mRNA
GC content 0.51
exon number 8
gene id csgalnact2
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61746803 ~ 61755455 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCAAAGAAGAAAGCTACAGAAACTATTTTGCGGAAGTACAGTTTTTTTTCCTCGATCAGTCCACTTTGCTCCGTGGCGTTGTTTAGAATAATTATTTTTGATGCTACTGCTTTTTAGCCCTTACACGGAGAGCTGAATATCTTGGTTCTAAATCATGTGTACACTGATGGACGAAATCCAAATGGATTCCACTCGCAATGTAACACCTGCAAGAGAACAGGCAGATTGTGATCATCAAACAAGATGCACCAGCGGTGTTCCTGACTTTATCTGAATAATGTGACATGAACGAACAAAGTAGCTTTTTTTTTATAGCAGCACTCAGAACAAACGTCCACCTTGTTGTTAATCTAACTTGCTCATTAGAGGGGACCTTTTTAACATTCCTAGAATATTGCATTGGACCTAATTCTGTCCAGCTTGAGGTAGATTTACCTGACGTGAAAGGGAATGCAGAGTCGTTACCCATAGACCGGATGCGAGCGTGATGCCCAGGCGAAGCTTTCCGCTGCAGGGACGGATGCGCTGGCTGTTCCTGGGGCTCGTCCTGCTGCTGGTCCTCTTCCTCTTTGCTTACTTGCTGGAGTGCACTCCCCCAGCTGACGTCAGCCTGGTCCTGCCTGGCTTGGGAGGGGAGTCCTATGGGAAGGAGTACTACCAGGCCCTGCTGCAAGAGCAGGAGGAGCACCACCTCAGCCGTGCCGCCAGCCTCAAGCGGCAGATCGCCCAGCTCAAGCAGGAGCTCCAGCAGATGAGTGAGAAGCTCAAGGacctgcaggacaggaaggaaggcCTCAGGGTCCAGGGACTGGCTGAGACCAAGGACCAGGTGCCTGGGGATCTCCTCGAattcctccactcccagatcgACAAAGCCGAGGTGAACACGGGAGCACGGCTGCCCAGCGAGTACGCCCTGGTCCCCTTTGAGAGCTTCAACTCCGGTAAGGTGTATCAACTGGAGATGGGGTTGACCAGGCACCCAGAGGAAAAGCCTGTGCGGAAGGACCGCAGGGACGAGCTGGTGGAGGTCATTGAGGCGGCCCTGGACGTCATAAACAACCCAGACGAGGAGGATGGCCAGGAGGATGATGTGCCCATGCAGAGGCAGGCGTACACTGAGAGCCACTTTACTGAGGGGCTGTACAGAACAGAACGGGACAAAGGCACACTCTACGAGCTCTTCTTTGCAAAAGAGGACTCCGACAATTTCCGCCACGTTACTCTTTTCCGTCCATTCGGTCCTTTAATGAAAGTCAGGAGCACATCCGTAGAAACGTCCGGAGTCGTCATCAATATCATTGTACCATTGGCGGGCAGAACAGATGCATTCTCACAGTTCCTACACAACTTCAGGGAAGTTTGCATAAAACATGATAGGGAAGTGCATCTTACGGTGGTCTACTTTGGACAAGAGGGCTTACGAGAGGTGAAGTCTTATTTGGAAAAAATGTCCAGggaggagactttttcCAACTACACCCTCATCCCAGTGGACGAGGAGTTTTCCAGGGGCAGGGGTCTGGACATCGGAGCCCGCGCCTGGAAGAAGGGTGACGTGTTGATGTTCTTCTGTGATGTGGATATCTACTTCACACGGGACTATCTCAACACCTGCCTCCTTCACACCGCTCCAACTGCTGCGCCCTCTCCTTCAGTGTCGAACTAAGCATGCGATTGTGTTGACAGTCAAGTCATTTTGCATGCCGAACCACCTCAGGGGAATATCcagtagcctagtcaaactgCGCACTGTGCCCAGCTTTGTGTGCTGGCCAGCGTGAGACAAGAGAGTATTTTATCCAGTGGTTTTCAGTTTGTATAATCCTGCCATAGTCTATGGAAATCTGGAGCTGGCTCCCCCCATTGAAAGTCAACTTATTCACAAGAAAGATGCTGGATTCTGGAGAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76070 lncRNA downstream 65746 61681214 ~ 61682107 (-) True G68737
TU76074 lncRNA downstream 68067 61678191 ~ 61679786 (-) True G68741
TU76073 lncRNA downstream 69750 61677818 ~ 61678103 (-) True G68740
TU76157 lncRNA downstream 99690 61647938 ~ 61648163 (-) True G68808
TU76136 lncRNA downstream 127803 61619498 ~ 61620050 (-) True G68787
TU76226 lncRNA upstream 37544 61792999 ~ 61793359 (-) True G68869
TU76280 lncRNA upstream 102065 61857520 ~ 61944106 (-) True G68921
TU76308 lncRNA upstream 150019 61905474 ~ 61905894 (-) True G68949
TU76268 lncRNA upstream 180058 61935513 ~ 61936398 (-) True G68910
TU76275 lncRNA upstream 209297 61964752 ~ 61965216 (-) True LOC110526377
XM_021607227.2 mRNA downstream 14247 61717454 ~ 61733606 (-) True LOC110526339
XM_021607168.2 mRNA downstream 70911 61652308 ~ 61676942 (-) True tial1
XM_021607152.2 mRNA downstream 70917 61652308 ~ 61676936 (-) False tial1
XM_021607161.2 mRNA downstream 70918 61652308 ~ 61676935 (-) False tial1
XM_021607145.2 mRNA downstream 70926 61652308 ~ 61676927 (-) False tial1
XM_036981852.1 mRNA upstream 2915 61758370 ~ 61789951 (-) False ret
XM_036981853.1 mRNA upstream 2915 61758370 ~ 61789952 (-) True ret
XM_036981856.1 mRNA upstream 41611 61797066 ~ 61840443 (-) False si:dkey-192p21.6
XM_036981858.1 mRNA upstream 43078 61798533 ~ 61836134 (-) False si:dkey-192p21.6
XM_036981860.1 mRNA upstream 43078 61798533 ~ 61840583 (-) True si:dkey-192p21.6
TU76069 other downstream 61545 61682278 ~ 61686308 (-) True G68736
TU74240 other downstream 1286619 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 2592708 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 2962236 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 4349365 57397194 ~ 57398488 (-) True G63328
TU76326 other upstream 226276 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 656067 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 1521753 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 2614447 64369902 ~ 64381356 (-) True LOC110526867
TU82292 other upstream 5063389 66818844 ~ 66822816 (-) False tjap1

Expression Profile