RNA id: XM_036981852.1


Basic Information

Item Value
RNA id XM_036981852.1
length 4321
RNA type mRNA
GC content 0.49
exon number 20
gene id ret
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61758370 ~ 61789952 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACATCGCTGAATATTAGCTTGATTTAAACCTCCCCCTGCACTGCTCGCTACAGACGGTCAAGCAGCAAAAGCTGCAGAGACCAGCCCAATGGGACAGGCACTCCGTCAATGTACTTCATTGTTTGCCCGGAGGAGCTGTGTGCGGGAAAACTAGTACAGTACTCTTGCTTACGTTTTTATCCATAGGTTCTCTACCGTTATTTTATACCAGTGGTCTCTACGCGTGATTTTTGATTATTCATCCTGCAACTTTCACTTATGATTGGCGATTATGGGGCAAACGTGTGGTTTCTCTCTGGGAAACATCGTTTTGGTCCTCCTGCTGTTGTGTGAAGGGTCAGTTGGGCTCTACTTCCCCCAGAATCAGTACAAGGAGACTGTGTACGTCGGGCAGTCTGCAGGGACACCCGTGCTCCAGGTCCACGCCATGGTGGAGAGCGACTCTCAACGGCCCCACTTCTACCTGTGCTACCTGAGGCCTCCAACCTATGCCCCATGGTTCCACCTGGACGAGACCACAGGGATACTCTCCATGAATAAGACCCTGGAGTGGAGCGACTTTGACTCTGCATATAAGTTTTGGAAGCTGCCGCTGAGTGTCATTGCTGCGACCAGACCGTTGAAGAAGTTCCTCTGTGGCCTCGGCCACCCCACCGTACAAGTCAGCCTGACCTTCATCAATGACACGGCGCCACCGTgtggccagaccagaccagagctgaAGAAACTGTGCTTCCCTGACAAAGACCTGAGCTCCCACATCAAGGAGAACAGGTTCCCCGGGGCCCTCCGCCAGCTCAGACAGCTCACCAGGCTTAACGTCTGCCCCAACTACACCATCTCCTACAGTGTAGAATCCGATGTTCCGGCCCCATTCGCTGTGAATGAAAACACCACTGAGTTGGTAGTGACTGCGCCGTTGGACCGCGAGGAGAGCGAGACATACAGTCCCATGCTGATCTGCACAGTGCAGACTGACACAATGGTAGACACCTTTTTTGTTACACTGCATATCAACGTCTACGACGAGGACGACAATGCGCCGTATGTCAGTGGAACAGACACAGAGGACGTGGTGCTGGAATTTGATCGCAAGCAGGGAAGTTCTTTTGGCAACTTGGTTGTCTATGATAGAGACACAACACCCAGGTATCCCAAATCCCAGAGTCAGAATAGATTTGTCGGAAATATGATGACCAATGACTCATGGATAAATGAAATGTTCACCATAGAGTACTCTTTCAAAGAAGAGAAGGCCATTTTTGGCAACGTCCGAGGCACTGTTCATGAGTTCCGGCTTGCACTGAAGAAGAATTTGTCTGTAACCGAAAATAGGACCTTCCAGCTGGATTACCTGGTCAATGACACTACATACCCCGGTCCAGAGGGAACTGTGATGCTGCACTACAATATCACCGTCTTACCTGTCCCCATTCTCTTCACCAATGTGACATACCTCTTCGCACTAACACGTAAAGCTAATGTCTACTCCCAGGTCGGTAGGATTTGTGTGGACAACAGCCTGAAGTTCCAGGGCATCAATGTCACATACCGGCTAgtagtagcagagaaaacagggAATGTGTCCGACGACGTGCAGTCATGCTACGCTGCGATTAGCATCGCACAGAGCCTCAAGGACATGGTGGGGGTGCTATATGTGAACGACACAGAGGCGCTTCGCAGGCCAGAGTGCCAGGACCTGCAGTATGTGGTTATTGCTCAAGAGCAACAGAATCTGCTGCAGGCTAGCACTCAGATCCTCGTTGTGCTCGATAGCGATAttGATAAGCAGGGCCTAGAGGACCAGCAGTTCCTCTCCTGTGCAAAGGGAAGACATCGTGGGGATTGTGAGACCATCAGAGGCCTGGGGGCAACCACAGGGAGGTGCCAATGGAGACAGGGCTCTGCAAAAGGAATATCAGAAAGTTATTCCACCTGCTCCCCTGACCTCCGCACGTGCCCTGATGGCTTTTGTGATGCAGTTGAAAGCAAAGACGCATCAATATGTCCTCAGGATTGTACACTTGAACCCGTTATAGGTGGTCATGAGAAGGGCATCATGTCTGGCATTAGAGCTGGCCATGGAACCTGCTACTGCTACTCTGAAAAATGCTTCTGTGAGAAGGATGATATAGAGGAGGCCATGTGTGACGAGGTCTGCAAGACCATCATTGCCACTGCCGTGCTGCTCTCCTTCATCGTCTCCATTCTCCTGTCCTCCTACTTCATCCATCGTTACCACAAGAACTCCCCCAAGCCGCCCATAACCTCGGCTGAGATGACCTTCCGGCGGCCCGCACAATCCTACCCAATCAGCTACTCTGCTAACAACATGCGCCGTGGCTCGTTGGACTCCATGGAGAACCAAGTAGCCATTGACACCTTCAAAATACCTGAGGATCCCAAATGGGAATTTCCACGCAAAAACCTGGTGCTGGGCAAAACGTTAGGAGAAGGGGAGTTTGGGAAGGTTGTCAAGGCGACTGCATTCCGGCTGAAAGGAAAGGCTGGTTACACCACAGTAGCTGTGAAAATGCTTAAAGACCACGCCTCACATAGTGAACTGCGGGACCTCCTGTCAGAATTCACCTTACTGAAGCAAGTCAACCATCCACACGTCATCAAGATGTACGGAGCCTGCAGCCAGGATGGTCCAATGTATCTGATTGTAGAATATGCCAAATATGGGTCACTGCGCAACTTCCTGCGTGAGAGCCGAAAGGTGGGACCCAGCTACATGTCAGGCAACGATGCCAACCGCAACTCGAGCTACCTGGAGAATCCAGATGAGAGGGCACTCACCATGGGCGACCTGATCTCTTTCACCTGGCAGATCTCCAGGGGCATGCAGTACCTGGCTGAAATGAAGCTTGTTCACAGGGACCTCGCTGCAAGAAATGTCCTAGTTGCGGAGGGCCGTAAGATGAAGATTTCAGACTTTGGTTTGTCCCGGGACGTGTATGAGGAAGACTCATATGTGAAGAGGAGCAAGGGTCGAATCCCAGTGAAATGGATGGCAATAGAATCCTTGTTTGATCACATTTACACAACACAAAGTGACGTCTGGTCCTTTGGTGTGCTGTTGTGGGAGATTGTGACACTGGGTGGAAACCCGTACCCAGGCATCGCCCCTGAACGCCTCTTTAACCTCCTCAAGACTGGCTACAGGATGGAGAAACCAGAAAACTGTACTGAGGAAATGTATAATCTGATGCTTCGATGCTGGAAACAGGAGTCAAACAAAAGGCCCATATTCATAGACATCAGCAAAGAACTGGAGAAGATGATGGTGAAAAACCGGGATTACCTGGACCTGGCAGCGTCTACGCCAGCCGACGCCCTACTGTACGACGACGCCCTCTCCGAAGAGGACACACCCCTAGTGGACAGCAATAATGCCCCTCTCCCTCGAACCATTCCCTCCACATGGATTGAAAACAAGCTCTATGGCATGTCATACCCGAACTGGCCTGAGAAGAGCCCCGTACTGCTCAACAGACTTGATGCCACTAACCCAGTCTTTACAAGATATGCCAATGATAGCGTTTATGCAAACTGGATGGCTTTGCCTTCACCCGCAAAAATTGTGGAGAAGATTGATAGTTAAAAGCAAAAACCATTGTCGAAAATAAAGATTCCTAATGGGGTAGAtgtgtatatttatataaaacTGTACATATACAATCTAAAGTTGGTGCCCTTTCATTTCTGTTGCACGGGGTATTCCAAGTTAAAACTGGGGGATTTCAAAAGTGCATTTGCTGAAAAATGGCTGGAATTACATAGACCGTGTTTCAAGCAGCTCTTCGGTATGTTAATCATTACCTCAAAGTCATGTTGGCCAAGTATCATTGCATGACCGTGTACCAGGTTGTATGTCAATGTTAATGTCTTTCAAGTGCCTGTGCCGCTTCTACGATAGCCTCCAATTAGTAGTGTACGACTGTGAAGATGTTGTTTCCAGACCAGAAATTAAAGGGGACTTCTTTACCGTCACCTGTCCTATAATGGTAGACCTGTGAGGTTAAGATGGACAAAGAGTGGACACTGAGTTCATCTAGAAAAACGGCAAAGTTTCTACTTCATATGATCATGTTCTTTGAAATGTAAAAGCCACTTTTGTCTTTCCACTTTAATAGAATGTGGGCATGTTCGGTGTCAAAGCTGCAGCTCACCATTTGATTCCTCGTAATGGCAATCTTTGTGCAACAGTTAGCTAGGATTTTTGAAAACAAATGAGTGTTATCAATTGTTGTTTTATCATTACGTGATTATGTTGCAATCAATAAAAGTTCAAATATATGCGATCTATTTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76070 lncRNA downstream 76263 61681214 ~ 61682107 (-) True G68737
TU76074 lncRNA downstream 78584 61678191 ~ 61679786 (-) True G68741
TU76073 lncRNA downstream 80267 61677818 ~ 61678103 (-) True G68740
TU76157 lncRNA downstream 110207 61647938 ~ 61648163 (-) True G68808
TU76136 lncRNA downstream 138320 61619498 ~ 61620050 (-) True G68787
TU76226 lncRNA upstream 3048 61792999 ~ 61793359 (-) True G68869
TU76280 lncRNA upstream 67569 61857520 ~ 61944106 (-) True G68921
TU76308 lncRNA upstream 115523 61905474 ~ 61905894 (-) True G68949
TU76268 lncRNA upstream 145562 61935513 ~ 61936398 (-) True G68910
TU76275 lncRNA upstream 174801 61964752 ~ 61965216 (-) True LOC110526377
XM_021607241.2 mRNA downstream 2915 61746803 ~ 61755455 (-) False csgalnact2
XR_005052459.1 mRNA downstream 2915 61746809 ~ 61755455 (-) False csgalnact2
XR_002473934.2 mRNA downstream 2915 61747853 ~ 61755455 (-) True csgalnact2
XM_021607227.2 mRNA downstream 24764 61717454 ~ 61733606 (-) True LOC110526339
XM_021607168.2 mRNA downstream 81428 61652308 ~ 61676942 (-) True tial1
XM_036981856.1 mRNA upstream 7115 61797066 ~ 61840443 (-) False si:dkey-192p21.6
XM_036981858.1 mRNA upstream 8582 61798533 ~ 61836134 (-) False si:dkey-192p21.6
XM_036981860.1 mRNA upstream 8582 61798533 ~ 61840583 (-) True si:dkey-192p21.6
XM_021607279.2 mRNA upstream 62360 61852311 ~ 61876999 (-) False sgpl1
XM_021607269.2 mRNA upstream 62360 61852311 ~ 61886102 (-) True sgpl1
TU76069 other downstream 72062 61682278 ~ 61686308 (-) True G68736
TU74240 other downstream 1297136 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 2603225 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 2972753 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 4359882 57397194 ~ 57398488 (-) True G63328
TU76326 other upstream 191780 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 621571 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 1487257 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 2579951 64369902 ~ 64381356 (-) True LOC110526867
TU82292 other upstream 5028893 66818844 ~ 66822816 (-) False tjap1

Expression Profile