RNA id: XM_036981856.1


Basic Information

Item Value
RNA id XM_036981856.1
length 3399
RNA type mRNA
GC content 0.43
exon number 18
gene id si:dkey-192p21.6
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61797066 ~ 61840583 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAGAGACTCCAAACAAAATGAGACAACTCTACACGCATGCATGCATAGTGCCCTTTGAACCCTGTTTATATCTGTAGCTGTCATAAAGATGAGTTGCAGTGGAATTGCTTTGTTGTAGGAAATGGAGCCTAGAAGAATCCTCACGCAGATCCTATGTGTGTTCTTTCTTACaactggacgaaatgaaggaaaGCTTGATGCAAAGTCGTGTTCAGGACGGCCTGCATTGAAATTAGACCAGGCATGTCTTACGTTCCATAACCAGCTACCAACCGGAGTTGATGTCCTCTACACATCTGATTACTGCTACAAGTGTATGTACCAGCCCCTGGTCAGTGTTCTAAATGGTCCCCAGAATGCATCTGTCGTGGTCAGCACCGTCCTCACTCTGACACTGCAGTTACAACCAATGGGCAGAAACACAACTCTCTGCAGTTGGAGTCAGTTGTATGAAGAAGCTGCCCATTACTCTGTCTGGATCCAAGAGTCAGAATCTCCCATCAATGTCATTTGCTATCAGACTGTGGATGTCAGTCCAAGTAACATCTATTTCCCTCTGTTGGTGGCAGCTCTTCTACTGGCACTTATTAGTCTCCTATGTGTCCTTGTTCCCTACCTGTACAGGAGGCGTTGTACGACGAAGCTCATCAAGACCATTTGTCACGAAGGACCACAACATGCAATGGATGATGAAACCCAAGGTTGTGGGGACGAGGTTAACACTGCCCAGCCAAAACCAACACGACTGCGCTCACTGGACACTTTCCGAGGACTTTCCCTGACAATCATGGTTTTTGTGAACTATGGAGGTGGAGGGTACTGGATATTTGAACACGCGCCTTGGAATGGTCTTACTGTGGCTGATCTTGTGATGCCTTGgTTTGTGTTCATCATTGGGACATCTGTAGTATTGGCCTTCACCTCCATGCAGAAAAGGGGAGTTAGCCGTCGGCAGCTAATACGCAAGCTAACATGGAGAACTGTGGTCCTCATCCTTATCGGCTTTTGTTTCATGAACTACTCTCCAAAGGATGGATTATTATCTTGGTCTTGGCTGAGAATCCCTGGAGTCCTCCAGCGTCTGGGATTCACCTACTTCATACTGTCTCTGATGCAGACTTTCTGTGGCATGAGAGAGATCCCACTGAGCAGGGATCGCTGGTGGGACCCTGTCCAGGATGTGGTCTTGTATTGGCCAGAGTGGATCTTCATTATTCTCCTGGAGACATTATGGCTGTGTCTCACCTTTCTATTGCCTGTGCCTAACTGTCCCACAGGTTATTTAGGGGCAGGTGGGATTGGGGATAATGGCCTTTATCCCAACTGTACTGGGGGAGCAGCTGGGTACATTGACAAGTGGTTATTGGGAGATAACATCTACCATTGGCCAACATGCAAGGCAATGTATCGTACTACCCAGCCCTTTGACCCAGAGGGGGTTCTGGGTACTATCAACTCCATTGTCATGGGATTCATGGGGATGCAAGCGGGAAAAATTCTCATTTTTTACAGGAAAAAGGATGTCAGCGTCCTCTCCCGATTCCTAGTATGGGCCATCCTCCTGGGAATCTCAGCAGCCATCCTTTCTAAGTGCACGCGAGACGAAGGATTTATACCTGTCAATAAAAACCTTTGGTCTCTGTCGTATATCACCTGTATGGGCTGCTTCTCTTTCCTCCTGCTGGGAGTCATGTATTTCGTCATGGACATTAAGGGCTGGTGGGGCGGCCAACCCTTCATTTACCCAGGGATGAATTCCATCTTTGTGTACGTGGGTCACTCTCTCCTGGGGTCCTACTTCCCCTTCAGCTGGGAGATGCGCTTTGTGGACAGCCACTGGGAGAAGCTGTTCCAGAGCCTGTGGGCCACCTCTCTCTGGGTCCTCATCGCTTTCCTGCTATACAGGAAGAAGTTCTTTCTCAAAATCTAATAGCGCCACAATCCAACTCCTTTCATTCAGTGTTTGCTTTCATTCTGAGCCATTGTTGTGAAATGTATTGCAAATGCTTGACTTTATTGTTTTACTGTAAAGTGTGTTGTgattttaaatgcactttaaatacagTTTGTTTTGATCTGATGTGAAAGTGTATGTGGATAATTCTGTTATCTATGTAATTAATTAAAATCTGTACAGTGGTCCTCAAAGATCCTCCACAGAGATCCTCAAAGAACCCATATAGCTCCACAAGGTGCCATTGCTCGTCAATGGTTCATATTTGCACCTTCGGTTAGTTGAGGGGTTCTTGGAGGAACATTTAATGGTTCAATGTAGCAAAGGGTTCCTGGAGGAACCCTGGAGTGGAGGCGTGGCTTAGTAGGGGCATGGCTTTAAGATAGATACTTTTCTGGCCACGTGTTAGAGTAATTGTCATTCCTCTttatctgttctgttgtattgtcgTCACGTCAGGGTTAAACACTGACAGTTGTGTAGCTTCAATGAAGCTAACAGAGGTGTATGAGTTCCTCAAGAGCCTATGCAAATCCCAAATTTGGAATAGTTAACACTTTGTTACTATATGTAATCAGCAGTGTTAATATTATATGCATAAATAGTCAAGGAAATGTTGCAGTGTACAAActtaacatgatgaacaggaatTACATTTACACTaacgggtggccaaaaataactatctgaaagccacaccTCCAATCTGATAGACTGGCACCTCtacaatatatttttaaaaatctaaCCCCTCCCATCACAAAAAGCTTCCGTTTTGAACCTTTATACAGGGGTTCATTGAAGACCATTTTCAGAGGGGTtcctcaatatatatatattttttaatctatTCGTATTTCAAAAAACTTCTGGAAAGTTCTTGGTTGTGGAGTTATATCAGTTGGCCTTGCACGAGCAAGAAAACGCTTAGTTAAGAACTAGGCCTAGATTGTTCCAAGCACTCAGCTATACCTGTATTGTAATGGTCGGTTAGCTAAAtagaatttgattgattgattgacgtTGTCTTGTGGGATTGCCATGTTCCATATCTGCATTGCTGAGATACAAAAGGGATGTTAAGATTTAACTTCATTCCTGAGAGGACCGTTCTGAGTCAGCTCTGGGTAATTGCactctaaaaaaaaatattatttcacaATGTACGGTTTTATAAATGAACATGAAAAAGTGCTAGAAATGGTTTAATAAACATAATTTCATCTTTTGCATGTTGAATAGCTGTTCATTTTCATTCTGTCtggtagccctttcctgcagtcaaatgaccaaatctccctctagtggcctcatagGTGGAATGTTATAATTTTTTACATAATTATAaattatatttcagtcttctgtgatgtatataaagtgttgcaaactcaaaatgtaatacatttcaactctatatctgatatggtacatatttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76226 lncRNA downstream 3707 61792999 ~ 61793359 (-) True G68869
TU76070 lncRNA downstream 114959 61681214 ~ 61682107 (-) True G68737
TU76074 lncRNA downstream 117280 61678191 ~ 61679786 (-) True G68741
TU76073 lncRNA downstream 118963 61677818 ~ 61678103 (-) True G68740
TU76157 lncRNA downstream 148903 61647938 ~ 61648163 (-) True G68808
TU76280 lncRNA upstream 17077 61857520 ~ 61944106 (-) True G68921
TU76308 lncRNA upstream 65031 61905474 ~ 61905894 (-) True G68949
TU76268 lncRNA upstream 95070 61935513 ~ 61936398 (-) True G68910
TU76275 lncRNA upstream 124309 61964752 ~ 61965216 (-) True LOC110526377
TU76321 lncRNA upstream 131076 61971519 ~ 61971917 (-) True G68962
XM_036981853.1 mRNA downstream 7114 61758370 ~ 61789952 (-) True ret
XM_036981852.1 mRNA downstream 7115 61758370 ~ 61789951 (-) False ret
XM_021607241.2 mRNA downstream 41611 61746803 ~ 61755455 (-) False csgalnact2
XR_005052459.1 mRNA downstream 41611 61746809 ~ 61755455 (-) False csgalnact2
XR_002473934.2 mRNA downstream 41611 61747853 ~ 61755455 (-) True csgalnact2
XM_021607279.2 mRNA upstream 11868 61852311 ~ 61876999 (-) False sgpl1
XM_021607269.2 mRNA upstream 11868 61852311 ~ 61886102 (-) True sgpl1
XM_036981866.1 mRNA upstream 61833 61902276 ~ 61916579 (-) True pdlim1
XM_021607347.2 mRNA upstream 80529 61920972 ~ 61997974 (-) False LOC110526377
XM_021607314.2 mRNA upstream 80529 61920972 ~ 61998061 (-) False LOC110526377
TU76069 other downstream 110758 61682278 ~ 61686308 (-) True G68736
TU74240 other downstream 1335832 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 2641921 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 3011449 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 4398578 57397194 ~ 57398488 (-) True G63328
TU76326 other upstream 141288 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 571079 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 1436765 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 2529459 64369902 ~ 64381356 (-) True LOC110526867
TU82292 other upstream 4978401 66818844 ~ 66822816 (-) False tjap1

Expression Profile