RNA id: TU76326


Basic Information

Item Value
RNA id TU76326
length 665
RNA type TUCP
GC content 0.56
exon number 1
gene id LOC110526417
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61981652 ~ 61983330 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGATGTGCATTGCAGTCTGCACAGTGAGAAACTCAAACTGTTCTGTCTGGATGATAAGCAGTCAATTTGTGTAGTGTGCCGGGATTCAAAGAACCATAAAAAGCATGACTGCATCCCCATAGATGAAGCTGCACTGGATCATAAGGAGGAAGTTAAGATGGCACTGAAGCCCCTAAAGGATATGCTGGAGGTCTTAAATGAAGTTAAACTGACCTGTGATCAAACAGCAGAGCACATTAAGACACAGGCCCAGCACACAGAGAAGCAGATTAAGGAGGAGTTTGGGAAGCTTCACCAGTTTCTACAGGATGAAGAGGAAGCCAGGATTGCTGCACTGAGGAAGGAAGAGAAGCAAAAGAGTCAGACGATGACAAAAAAGATTGAAGAGATGAGCAGGGAGATATCATCACTTTCGGACACAATCAGAGCCATAGAGAAAGAGCTGGGAGCCGACGATATCTCGTTCCTGCAGAATTTCAAGGCCACAGTCAAAAAAGCAAAGTGCACCCTGTCAAATCCGGAGAAGATTTCAGGATCACTGATCCACGTGGCAAAGTACCTAGGCAACCTGCAGTTCAGAGTCTGGGAGAAGATGCAGGAAATAGTTCCATCCGCATCTCATCCTGTCCGAGGATCTGATGAGTGTGACATACACCAAAGACgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76324 lncRNA downstream 818 61980609 ~ 61980913 (-) True G68965
TU76321 lncRNA downstream 9814 61971519 ~ 61971917 (-) True G68962
TU76275 lncRNA downstream 16515 61964752 ~ 61965216 (-) True LOC110526377
TU76280 lncRNA downstream 37625 61857520 ~ 61944106 (-) True G68921
TU76268 lncRNA downstream 45333 61935513 ~ 61936398 (-) True G68910
TU76336 lncRNA upstream 18510 62000905 ~ 62043540 (-) True G68974
TU76466 lncRNA upstream 188555 62170950 ~ 62173859 (-) True G69071
TU76607 lncRNA upstream 384862 62367257 ~ 62370460 (-) False LOC110526498
TU76608 lncRNA upstream 384862 62367257 ~ 62370460 (-) True LOC110526498
TU76549 lncRNA upstream 422158 62404553 ~ 62405932 (-) True G69149
XM_036981866.1 mRNA downstream 65152 61902276 ~ 61916579 (-) True pdlim1
XM_021607269.2 mRNA downstream 95629 61852311 ~ 61886102 (-) True sgpl1
XM_021607279.2 mRNA downstream 104732 61852311 ~ 61876999 (-) False sgpl1
XM_036981860.1 mRNA downstream 141148 61798533 ~ 61840583 (-) True si:dkey-192p21.6
XM_036981856.1 mRNA downstream 141288 61797066 ~ 61840443 (-) False si:dkey-192p21.6
XM_036981964.1 mRNA upstream 24005 62006400 ~ 62027537 (-) True LOC110526424
XM_021607444.2 mRNA upstream 328088 62310483 ~ 62315483 (-) True LOC110526449
XM_021607452.2 mRNA upstream 341038 62323433 ~ 62351491 (-) False LOC110526460
XM_021607460.2 mRNA upstream 341038 62323433 ~ 62351491 (-) False LOC110526460
XM_021607469.2 mRNA upstream 341038 62323433 ~ 62351491 (-) False LOC110526460
TU76069 other downstream 295423 61682278 ~ 61686308 (-) True G68736
TU74240 other downstream 1520497 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 2826586 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 3196114 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 4583243 57397194 ~ 57398488 (-) True G63328
TU76624 other upstream 429127 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 1294813 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 2387507 64369902 ~ 64381356 (-) True LOC110526867
TU82292 other upstream 4836449 66818844 ~ 66822816 (-) False tjap1
TU82368 other upstream 5012287 66994682 ~ 67010587 (-) True LOC110527436

Expression Profile