RNA id: XM_021607444.2


Basic Information

Item Value
RNA id XM_021607444.2
length 2164
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC110526449
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 62310483 ~ 62315483 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAGACTCTTCCCTCAACCTTAAGGCGAGTAGCAGCGACCAATCACCATGCCATTACAGGCTTCAGAGGAAGCTGTTTATGTGACTCCAGCGCTAATTAGGCTCATGAACTAACAAATCGCTTGCACAACTGGTGAGGAACCGATCACATCCATGGATTGTCTGGCGCAGTTGACCACCTTTATGGCTATTTGTTGATTTGTTGTTACTTTGGCTTCTATTCTTGCTGCACTCTTCGTTCCAAAGTTATTTATGCTGACAAACTTTCTCGGTGTGGAGTAGTAACCTATTTTTTTTTACGAAGAACGCCTGCACCTCTTAAACTCTAAACTGGGGAATCTTGACTATCAAACCATGTTTCAACCTACACCGAAGAGGTGTTTTACTATAGAATCGTTGGTAGCGAAGGATAATCCTCTACCAGTGTCGAGGTCTGAGGAACCCATACGACCAGCAGCTCTGAGCTATGCAAACTCCAGCCAGATGAATCCATTTCTGAACGGGTTTCATTCCAGCGGCAGGGGCGTCTACTCTAATCCGGACTTGGTGTTCGCTGAGGCGGTCTCACATCAGAACAACTCCGGTGTCCCAGTTCATTCGGTACCACCTCCACACGCGTTGGCTCACCCACTTTCATCCTCACATAGTCCGCACCATCTTTTTGCCAGCCAGCAAAGGGACCCCTCAACTTTTTACCCATGGCTAATACATAGATATAGGTACTTGGGTCACAGATTCCAAGGTAACGAAACAAGCCCGGAGAGCTTCCTTTTGCACAATGCACTGGCCAGAAAGCCCAAAAGAATTCGGACAGCTTTTTCCCCTTCCCAACTTCTGCGGCTTGAGCACGCATTTGAAAAAAACCATTACGTCGTAGGTGCCGAACGAAAACAGCTTGCGCACACCCTTAGCCTCACAGAAACTCAGGTAAAAGTGTGGTTTCAGAACCGAAGAACCAAGTTCAAGCGTCAAAAGTTGGAGGAGGAGGGTTCAGATTCGCAACAGAAGAAGAAGGGGACCCATCACATAAACCGATGGAGACTCGCAACTAAACAAGGATCGGGAAGCCCGGAGGAAATTGATGTAACTTCAGACGATTAAAATACGAAATTGTTTGAACCTGGGACAGCCGTGTGGCGTGAAGGATGACATGGCTAAGGATGCTgtgtacagagagacagagagagggtaaagCCAATGTCACATTTCGATTCTTCGGAGATCGGCAGCTGAGGGTGAGAGATCCGATTGGTGGCACTGCTGTCACTACCATGGGTCTGTCAAACCATATCAAATTACCCAGGCAAAAGTGATTGACAGTATCGCAGTCCACCTACCTGACCACCTTCCACGCATCAACCCACCACTACAATCTCCCACGAACCACCCAAAAATTAATCTCCAATTCACATTGGACATTTGCACTTCTGAAAGTTTCTAAATATGAACGTTTCCACTCAAGATACCAAAATCCACAACTGTTTTTGTAAAACTTAAATTGCATGGTAGACTTTCTGGTAGTTGTTTTAATTTGATAATTTTCTCAAAAACAACTTTGTTTTAACTCTATTTTCAATCTCAGATATGTTGTGCTTCTTCCTTTTTACAAAGTGTGCAGTCTTTTAATTAATGATTATCGTGTTAAAGTGATTGTGAGAACAGTATGAAGTAGCAGTGCTGCGTTATAGTGTTtttaaagaaaatgtatttcgAAAACTTTATAAAAGTTTATCAAACCACAGATAAAGTACTTAAAGGGAAAGTATCCAGGACATTCCTTAAACCTAAAGCTTTACCATGTCTCCGTTATTCTGTCACGAGCATATTGTCAGGATTTGACCCTTCCGTGAGAGTTGCCACAAAGGACTAATGCAAGAATTGACTGCCGTAGAGGCGAGAAAACGTCAAGCACTGAGCGTATCCATGTACAGAGATACTaaaagttaatgtttctgttaaACCCTCTTTTATCAGAATGTAAATAATGTTGTGTTTGTGTTAAGTTTGCTACAATTTTAACACAAAGTATACTTCCAAGAAGTATGTAATTGTTAATATTTTGTCAATAAAGTTTTATCAATATGTTGCGCGCGGAGTAAAAGTAGGGTTTTGATTTTAGATCAACTTTCATATCTTGACATTTTATAAAGAGACCTGTTACGCT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09317 EMX; homeobox protein EMX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76466 lncRNA downstream 136624 62170950 ~ 62173859 (-) True G69071
TU76336 lncRNA downstream 266943 62000905 ~ 62043540 (-) True G68974
TU76324 lncRNA downstream 329570 61980609 ~ 61980913 (-) True G68965
TU76321 lncRNA downstream 338566 61971519 ~ 61971917 (-) True G68962
TU76275 lncRNA downstream 345267 61964752 ~ 61965216 (-) True LOC110526377
TU76607 lncRNA upstream 51774 62367257 ~ 62370460 (-) False LOC110526498
TU76608 lncRNA upstream 51774 62367257 ~ 62370460 (-) True LOC110526498
TU76549 lncRNA upstream 89070 62404553 ~ 62405932 (-) True G69149
TU76548 lncRNA upstream 106427 62421910 ~ 62428036 (-) True LOC110526526
TU76630 lncRNA upstream 120703 62436186 ~ 62436564 (-) True G69215
XM_036981964.1 mRNA downstream 282946 62006400 ~ 62027537 (-) True LOC110526424
XR_002473938.2 mRNA downstream 305866 61920972 ~ 62004617 (-) False LOC110526377
XM_021607324.2 mRNA downstream 305868 61920972 ~ 62004615 (-) False LOC110526377
XM_021607304.2 mRNA downstream 305869 61920972 ~ 62004614 (-) False LOC110526377
XM_021607332.2 mRNA downstream 305869 61920972 ~ 62004614 (-) False LOC110526377
XM_021607452.2 mRNA upstream 7950 62323433 ~ 62351491 (-) False LOC110526460
XM_021607460.2 mRNA upstream 7950 62323433 ~ 62351491 (-) False LOC110526460
XM_021607469.2 mRNA upstream 7950 62323433 ~ 62351491 (-) False LOC110526460
XM_021607475.2 mRNA upstream 7950 62323433 ~ 62351491 (-) False LOC110526460
XM_021607484.2 mRNA upstream 7950 62323433 ~ 62351491 (-) False LOC110526460
TU76326 other downstream 328088 61981731 ~ 61982395 (-) True LOC110526417
TU76069 other downstream 624175 61682278 ~ 61686308 (-) True G68736
TU74240 other downstream 1849249 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 3155338 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 3524866 58784742 ~ 58785617 (-) True G65147
TU76624 other upstream 96039 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 961725 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 2054419 64369902 ~ 64381356 (-) True LOC110526867
TU82292 other upstream 4503361 66818844 ~ 66822816 (-) False tjap1
TU82368 other upstream 4679199 66994682 ~ 67010587 (-) True LOC110527436

Expression Profile