Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021607493.2 |
| length | 5741 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 22 |
| gene id | LOC110526460 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 62323433 ~ 62351491 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0001731 | formation of translation preinitiation complex | biological_process |
| GO:0006446 | regulation of translational initiation | biological_process |
| GO:0005852 | eukaryotic translation initiation factor 3 complex | cellular_component |
| GO:0033290 | eukaryotic 48S preinitiation complex | cellular_component |
| GO:0016282 | eukaryotic 43S preinitiation complex | cellular_component |
| GO:0003743 | translation initiation factor activity | molecular_function |
| id | description |
|---|---|
| K03254 | EIF3A; translation initiation factor 3 subunit A |
62,308,000
62,312,000
62,316,000
62,320,000
62,324,000
62,328,000
62,332,000
62,336,000
62,340,000
62,344,000
62,348,000
62,352,000
62,356,000
62,360,000
62,364,000
62,368,000
NC_048565.1
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU76466 | lncRNA | downstream | 149574 | 62170950 ~ 62173859 (-) | True | G69071 |
| TU76336 | lncRNA | downstream | 279893 | 62000905 ~ 62043540 (-) | True | G68974 |
| TU76324 | lncRNA | downstream | 342520 | 61980609 ~ 61980913 (-) | True | G68965 |
| TU76321 | lncRNA | downstream | 351516 | 61971519 ~ 61971917 (-) | True | G68962 |
| TU76275 | lncRNA | downstream | 358217 | 61964752 ~ 61965216 (-) | True | LOC110526377 |
| TU76607 | lncRNA | upstream | 15766 | 62367257 ~ 62370460 (-) | False | LOC110526498 |
| TU76608 | lncRNA | upstream | 15766 | 62367257 ~ 62370460 (-) | True | LOC110526498 |
| TU76549 | lncRNA | upstream | 53062 | 62404553 ~ 62405932 (-) | True | G69149 |
| TU76548 | lncRNA | upstream | 70419 | 62421910 ~ 62428036 (-) | True | LOC110526526 |
| TU76630 | lncRNA | upstream | 84695 | 62436186 ~ 62436564 (-) | True | G69215 |
| XM_021607444.2 | mRNA | downstream | 7950 | 62310483 ~ 62315483 (-) | True | LOC110526449 |
| XM_036981964.1 | mRNA | downstream | 295896 | 62006400 ~ 62027537 (-) | True | LOC110526424 |
| XR_002473938.2 | mRNA | downstream | 318816 | 61920972 ~ 62004617 (-) | False | LOC110526377 |
| XM_021607324.2 | mRNA | downstream | 318818 | 61920972 ~ 62004615 (-) | False | LOC110526377 |
| XR_005052477.1 | mRNA | upstream | 15748 | 62367239 ~ 62370394 (-) | False | LOC110526498 |
| XR_002473970.2 | mRNA | upstream | 15748 | 62367239 ~ 62371732 (-) | False | LOC110526498 |
| XR_005052479.1 | mRNA | upstream | 15748 | 62367239 ~ 62371788 (-) | False | LOC110526498 |
| XR_002473971.2 | mRNA | upstream | 15748 | 62367239 ~ 62375476 (-) | False | LOC110526498 |
| XM_021607529.2 | mRNA | upstream | 38802 | 62390293 ~ 62403103 (-) | True | LOC110526503 |
| TU76326 | other | downstream | 341038 | 61981731 ~ 61982395 (-) | True | LOC110526417 |
| TU76069 | other | downstream | 637125 | 61682278 ~ 61686308 (-) | True | G68736 |
| TU74240 | other | downstream | 1862199 | 60430207 ~ 60461234 (-) | True | LOC110526097 |
| TU72370 | other | downstream | 3168288 | 59144373 ~ 59155145 (-) | True | LOC110525695 |
| TU72149 | other | downstream | 3537816 | 58784742 ~ 58785617 (-) | True | G65147 |
| TU76624 | other | upstream | 60031 | 62411522 ~ 62418296 (-) | True | G69210 |
| TU77510 | other | upstream | 925717 | 63277208 ~ 63277752 (-) | True | G70013 |
| TU78947 | other | upstream | 2018411 | 64369902 ~ 64381356 (-) | True | LOC110526867 |
| TU82292 | other | upstream | 4467353 | 66818844 ~ 66822816 (-) | False | tjap1 |
| TU82368 | other | upstream | 4643191 | 66994682 ~ 67010587 (-) | True | LOC110527436 |
