RNA id: XM_036982179.1


Basic Information

Item Value
RNA id XM_036982179.1
length 3821
RNA type mRNA
GC content 0.44
exon number 13
gene id LOC110526533
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 62435282 ~ 62492911 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtcggtgtgctgttcatgtttgtttactaaatgtattcactccctgaacttgcttcccgactctcagcctACATCGTTACAGAGGGGAAGTGACAAGAAGAAAGTTAGGTGTGGCATGCCGGCAAAGCGTTGTCTTCATCTATTGGTGTAGAGTGTTGTATGAAGCTGAGTGTCTAGACCGTTGATAAGTGTGAATATGTCTGACAAGGAAGGTGGGGCCTCAGAGGGGGGGCTGAATGTTACCCTCACGTTACGGCTTCTGATGCATGGGAAGGAAGTGGGCAGCATAATTGGAAAGAAAGGGGAAACCgtcaaaaagatgagagaggagAGTGGCGCTCGCATCAACATTTCGGAGGGATCTTCTCCAGAGAGGATTGTTACCATCACAGGACCAACAGAGGGCATCTTCAAAGCTTTCTCTATGATCGCTGAGAAGTTTGAGGAGGACATTACAGCTGCAATGACAAACAGCACGGTAACAAGCCATCCTCCAGTGACACTCCGCCTTGTGTTCCCAGGGAGTCAGTGTGGCTCCTTGATAGGCAAAGGAGGCTCCAAGATCAAGGAGATCAGAGAGACCACAGGTGCTCAGGTGCAGGTTGCAGGGGACATGCTGCCAGAATCCACTGAGAGAGCTGTCACTATCTCAGGCACTCCTCAGGCCATCACACAGTGTGTCAGACACATCTGCTCTGTCATTCTGGAATCACCGCCCAAAGGAGCAACTATCCCATATCGCCCCAAGACCATGCCAGGAGCCGGCCATCCagtatttcaacaacaacaacaacaacaacaacatgcttCACAAGCCTTCACAATTCAAGGACAGTATGCGTATCCACATCAAGATTTGACCAAGCTTCACCAGTTGGCTATGCAGCATATCCCCCTCCCTTCCCTTGGGCAAAGCAACCCTACCTTCCCTGGAATGGATGCCTCTGTCGCCACAAGTTCTCAGGAGCTGGCGATACCCAACGACTTTATTGGCAGCATAATTGGCAGACAAGGCAGCAAGATCAATGAGATTCGCCAGGTGTCAGGAGCTCACATCAAGATAGCCAGTGCCACGGACGGATCGCCCATGCGCCAAGTCACAATCATAGGCTCTCCTACCAGCATCAGTGTGGCACACTACCTCATCAATGTCAGCTTAGAGATGGCTAAATACACCATGCAGGCTGCTTCCTCTGCGTCATCTGTTGACCTCAACAATATGAGCTTCTCTCAGTCTGCTCCCACTGTCTCCACACCCACCTCTATGGCTGTCATGGCCGCCACCACCCAAGTCCCTGGCACCATTAACATGCACTCCCCCTCCACCTTACAGTCCATCCCCACCCAGCACTATGCTGTCCCCGTTTCCAGTCTGCTTGGCATGAAAACGCTCCCTATGCTGGCTATGCACCCAGCAGCTGCCTCAGGGCTCCTGCAAGGTCTATCCCCTTACACCACTAAGATTCCTACTGCTGGCATGAAAAAACCTGAGCGCCAGAAGTTTGCCCCATATTGACATATGGGATAAGAATTGAATTCCCCTTCCAAAAACACGCTTGGGGTCAGTACTGCATAACACTTGTTCCCTGTTGCAAAGCTTGATTAAGATATATTGACTGTATGCAGAGGCCTCATGCCCGTAGGGGGGACAGGGGCGTGTTCCCCCTCAGATTTGTCtcgttgaaaaatatgttgttgtttctctgtgatactactagccacctagcaattttatgaagttggctttaggtagcacagataggttcccaatctcctaCCCTCATtactagctaccaagaagccatttcaggatATAAATAAAGTTAGAGTAGCTCGTGTGCAAGGTTTCCTGCTGGCAAGATTGCTACACCTTAGAAAAGCAAGCAGTtgctaaatgtactgaataaaactCACATGAATTTAAATATTTTACCCAGACTTTAGCAGAGCAGCAGAAAAGCATATAAGAGGTATGCTGAGATGTgctgaaaaaaataaacatatttttggcatataattaagcataatgattattcTCTAGTTTGCAGGATAAACCTTTcagctgtttcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtagtgtcACAGTAGTGTAACAGTATTGTTTGCAACTGTAACTAAAGCGAAATACCTACTTGTGTATCAGAACATACGCAACAATAAACAGGCATTTCTCAAGCTTACAGTATGTGATGCACAGAAACAGCTGATCCTTCCAGCAGAACAGTTTTTTTGAATCGCTGTAAACAGTTTGCCAATGATGTGGTTAGGAAAAAGCCAGTTCCAAACCAGAATTGACGTTGTACCAGCTGCATTCTATCGGTAGGGTAACTGttaggtaacactttacttgacaccgaAGTGTCAAGTATTATGACATGGCCATAACCATgccataatatgtcataacagctgacataatgtgtcataacctgttataatatggtcataacactgtcatgacccatatatttacacctcttgtgacatatattgcgttattttatggctggttatgacacctacatcagagtgtcaaaacccacatttattcaaatgaGTTTTTTCACTGCCAAGATGTTTCCTTTTGTTTGAATGTTTCCTTCTTAAATCCTTTGTTGTTGTGGTAATATATTTTTGTTACAGTCATGCTTATTTTTTATCGTCATTTTTCAAAAACGATCTCGTAGAAAATGAAGTTTATTGCACTGCCGTGAAGCATGATGACCTCCCTGTGACACTTTAcgtggactaagaaaatacaatTTATGAAACTGTCACGAAGCATCACGACCATCATAATCATACAAGCCAGATcggcctatcacgtacatgcccttatatcagtcatcaatcaaaaagagggtgtcttgtcctgctcctgcaaTCGGATcgtgcattcatcccagtcatcagcaacagagcattggggtaggtgcaCGTCCGACATCAATGTGTGCGCAATTCAAATTCTAATTGAACATGGTccattttgtatattttttatatcacatacataaacatactgttgacacgtAGGCCAGgatgtaatggaatgttttgccttgtgtggtagctTTTGAGTGTTTTGacaggtgtcataaccagccataaaataacacaatatatgtcacaacaggtctaaatctATTTATTATAACAGGTtgtgacaagttatgtcagctgttatgacatattatgacatgttTATGACCGCGAACGTGAACATTTATGTCGCTGGTTGTCAAGTAAAGTTATTACAGTGAAGTTTACTGTAACAATGGTTTTTCCGCTTGGTCATgttttttcctcctcctccaataggctcTCGTCAGTGGTTACAGACTTGGGTGCTCTGTAGTATTGTTGCACATGCAGTGCTGATGGGATTACTCTAAAGCCGCGTTGGATTCTTGTGGCTTTGAATCTACACAAAAATCCTGTAGAGTGGGACTGGCCTAACTAATTCCTATAGTTCTGTTTTTTTGCCGCTTGGTTTTCTCCAGAACTGAAGTCAAAATGAACAAACCTCTACAGTCCAATTCATATTCCACTCTGCTCTCAATATCTGTGGTTGATGCAGCACACTATTGTAACCACGTTATGTTTATGCTCGTGTTTTTAATTAGGTTCTACTCTTAGTTTTGTTGATGAGCTCTTATGATTTGTTATATTTGTCCCAGACATGAAATTACTTTTAAATAAATCAAGCTTTTTACGAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75678 lncRNA upstream 43936 62414680 ~ 62416124 (+) True G68384
TU75404 lncRNA upstream 477139 61981733 ~ 61982921 (+) True G68132
TU75402 lncRNA upstream 481997 61977849 ~ 61978063 (+) True G68130
TU75399 lncRNA upstream 483963 61975881 ~ 61976097 (+) True G68127
TU75390 lncRNA upstream 494882 61964814 ~ 61965178 (+) True G68119
TU75782 lncRNA downstream 39258 62532169 ~ 62532538 (+) True G68469
TU75785 lncRNA downstream 42697 62535608 ~ 62535941 (+) True G68472
TU75802 lncRNA downstream 47204 62540115 ~ 62540433 (+) True G68479
TU75823 lncRNA downstream 75442 62568353 ~ 62568619 (+) True G68498
TU75800 lncRNA downstream 116838 62609749 ~ 62610025 (+) True G68477
XM_036982214.1 mRNA upstream 18929 62440764 ~ 62441131 (+) True LOC118965226
XM_021607542.2 mRNA upstream 70052 62383690 ~ 62390008 (+) False LOC110526511
XM_036982113.1 mRNA upstream 70052 62383690 ~ 62390008 (+) True LOC110526511
XM_021607506.2 mRNA upstream 93861 62360989 ~ 62366199 (+) True LOC110526492
XM_021607433.2 mRNA upstream 291373 62153349 ~ 62168687 (+) True LOC110526440
XM_021607603.2 mRNA downstream 12260 62505171 ~ 62526302 (+) True LOC110526548
XM_021607652.2 mRNA downstream 92953 62585864 ~ 62608428 (+) False LOC110526555
XM_021607617.2 mRNA downstream 92954 62585865 ~ 62608428 (+) False LOC110526555
XM_021607644.2 mRNA downstream 92954 62585865 ~ 62608428 (+) False LOC110526555
XM_021607661.2 mRNA downstream 92956 62585867 ~ 62608428 (+) False LOC110526555
TU75188 other upstream 726672 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 1144808 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 2517996 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 3134931 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 3759681 58699296 ~ 58700379 (+) True G64338
TU77508 other downstream 782052 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 2316678 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 3422824 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 3422824 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 3794768 66287679 ~ 66288469 (+) True G73515

Expression Profile