RNA id: TU78174


Basic Information

Item Value
RNA id TU78174
length 1458
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC110532553
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 63630570 ~ 63654636 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAAAAATAGATCAACATACATGCATGTGGCAAAACAGAAACATAAACATTGGCATAATCATACTACCATATTTAGCACATTGATATCTTGTTAAGTTAATTGTCGTTTTAAATGGTGTATTGAATATTCCTAGCACTATTTCAAGCATCTAAAAACGCAAAGTAAATTACCTTGTAATCTTTCATGTTTCAGAGTCTGATGTAAATGTGCTAAATATGTTAGTTTATGCCAAATGCCTCTTTTGTTTGGTGTTTTCCCACATATGGTCATATATTTTCTGACTGAAAGAAAAGTTCATGATTTTTATATAATTCATCAACCAGGGGACGAGAATGTAGCCCACCATGCTTAAAAATGAGAAGCAAACTCAATCTATGAAAATATGTATTGTATCTTACTTGTGTTTTTGTATGGATTTATAGCAacaccacaaacaaacaaaaacaacctgATCGCTGAGGATCGGAAAGCATGCGTCAGTGGCAGGCTCATTGTGTGTGGAGATGTTATAGTTGTGCGTCCAATTTGTCTCCGACTACTAAGGACGTTGCCACAGAGGCGAGGAAATATGCTCTGTATGGAAGCGACTTCCCCCGGCGGCGTCCCGTGAGGACCGGACAGCTTCCATTGTTATCTGACGGGATCAGGGCACCTCTTCAAAGCACTCGAGATAAAGGGTCGTAATTGGGAGGCTGAGAAGCAATAGTCAGATCATCGATAAAGGAGACATTCAATATATCCTTATCTGCATTGTCATAGCTAAGCGATAATTTTAGGGGTATTGTCCCGTAGCTGCTGGGGGTCTTCCATCTGAAGAGACTGAAACACGTGAAGGGCTTCGTATACAGAGAGAAGGGACACCTGGCGACATTGGCCTGGTTGGATCATTTGGGTTGACATTATTTCTTCAACTTTCCATTTCTAGATGTTTTTGACATTCTTTCTGGCGAACATCTGGCTGGAATGCAATTTTGAACAGGCCTCTTTGGGGATATTTTACGCATGTGTAAGCTATGCAAAACCACATGTACTGTAGCCATTGTAGGCGTTTTTCAGACTTTTTTAGAGCTTGCTCTCCATTATTTACATTACAATCAAACCTAATTGTGTTGCTACTGTAATACCTTTGATCTGTAATGTTTAAACCGACTGCGCCAAATGCTGTCTGTTGGGCCAGTGGCGCCAGTGCTCACCGGGGTATCGAAGAGGTGTTAATGCTAAACCATTAGAGTAGTATTTTACTTGCCTTTGCTTTACATTTGATTTTAGTGTTGTGGAAGGGGCTTAGAAAGGAATGATGTAAATGACCAGACTGCAATGTTGTGTAAAATCATTTAAATAATTAATATCAGAGTGGTCAACTATAAAGGATGATAAAATATAATTCCATTCCCATAAAATCATAGAGGCCACAGTGATTGCCTGAAATGTATGTGTACGAACCCACGACCGGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78180 lncRNA downstream 996 63629297 ~ 63629649 (-) True vox
TU77904 lncRNA downstream 14384 63616056 ~ 63616261 (-) True G70385
TU77867 lncRNA downstream 67737 63562528 ~ 63562908 (-) True G70352
TU77865 lncRNA downstream 71011 63559346 ~ 63559634 (-) True G70350
TU77661 lncRNA downstream 297828 63332528 ~ 63332817 (-) True G70151
TU78186 lncRNA upstream 21899 63654037 ~ 63685264 (-) True G70655
TU78172 lncRNA upstream 62510 63694648 ~ 63697766 (-) True LOC110526836
TU78218 lncRNA upstream 93035 63725173 ~ 63725436 (-) True G70687
TU78271 lncRNA upstream 165523 63797661 ~ 63798209 (-) True G70740
TU78284 lncRNA upstream 175682 63807820 ~ 63808085 (-) True G70753
XM_036982664.1 mRNA downstream 227 63628235 ~ 63630418 (-) False vox
XM_021616534.2 mRNA downstream 4768 63624834 ~ 63625877 (-) True vent
XM_021607904.2 mRNA downstream 305151 63293360 ~ 63325494 (-) True blnk
XM_021607928.2 mRNA downstream 310447 63293360 ~ 63320198 (-) False blnk
XM_021607932.2 mRNA downstream 315668 63293360 ~ 63314977 (-) False blnk
XM_021608008.2 mRNA upstream 22413 63654551 ~ 63679213 (-) False LOC110526802
XM_021607996.2 mRNA upstream 22499 63654637 ~ 63679212 (-) False LOC110526802
XM_021608003.2 mRNA upstream 22499 63654637 ~ 63679212 (-) True LOC110526802
XM_036982667.1 mRNA upstream 62469 63694607 ~ 63980715 (-) False LOC110526836
XM_036982670.1 mRNA upstream 62469 63694607 ~ 63980715 (-) False LOC110526836
TU77510 other downstream 352893 63277208 ~ 63277752 (-) True G70013
TU76624 other downstream 1212349 62411522 ~ 62418296 (-) True G69210
TU76326 other downstream 1648250 61981731 ~ 61982395 (-) True LOC110526417
TU76069 other downstream 1944337 61682278 ~ 61686308 (-) True G68736
TU74240 other downstream 3169411 60430207 ~ 60461234 (-) True LOC110526097
TU78947 other upstream 737764 64369902 ~ 64381356 (-) True LOC110526867
TU82292 other upstream 3186706 66818844 ~ 66822816 (-) False tjap1
TU82368 other upstream 3362544 66994682 ~ 67010587 (-) True LOC110527436
TU83185 other upstream 3754371 67386509 ~ 67388044 (-) True LOC110527584
TU83338 other upstream 4037451 67669589 ~ 67681730 (-) False LOC110527687

Expression Profile