RNA id: XM_036982670.1


Basic Information

Item Value
RNA id XM_036982670.1
length 6910
RNA type mRNA
GC content 0.50
exon number 19
gene id LOC110526836
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 63694607 ~ 63980715 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAACAAGAAGAAGCCTATTTGAAATGGTCTACACTTGCTTTATTTACTGGGAAGAGATAACTCGGAAGATAATTCAATTAAAGTCTCGGTTCACAATGAAACTGCTGAACTTACTTTGCGTTGTTGTCGGGTTGTGGAGGACATGCCTGACGAACGGAAACTGCCGGAACCTCTTCATTGACAGCTGTCATTGCTCCTCCGAGAGGTCCAAGAAGTTGGGCAGACAAACGTTCCGGGTGAAAGTGGTGTGTGATGATGTGGAATTACTGGACACTCTACAACCCAGTTTCTTACCCAACAAAACAGTTTCCCTGATTCTCAGTAACAACAAGATCTCACTACTGAGAAACGCCTCCTTCTTTGGCCTGACAATCCTGGAGAAACTgGACCTGAGGAATAATTTGATTAGCACGGTGGAGCATGGGGCCTTCCGCGGACTGGTGGCTCTGAGGAGACTGGATCTGTCCAACAATCGGATTGGCTGCCTCTCTCCTGAAATGTTTGTAGACCTTGGCAATCTCTCTAAATTGAATCTATCTGGAAATATTTTCTCTACCTTGCCGGTGGGACTATTCACACACCTCCTGTCTCTCGAAGTCCTGCACTTCTCTACAGAGTCTCTGTTCTGTGACTGTCAGCTGGAGTGGCTGCTGCTGTGGGCCAGGGCAAACGGCGTGCTTCTGGGCAACGACACCCTGTGTGTTCATCCCACACACCTCCGCGGCCTGGAGGTCCACAACCTGAGGGAGACACAGCTCAGATGTGATGAGCCTCTGGAGCTGCCCCTGTTTCAGCTGATCCCGTCCCAGAGACAGGTGGTGTTCCGTGGGGACCGGCTGCCGCTGCAGTGCACTGTGTCCTACCTGGACCCCTCGGTCACGCTGCTCTGGCACCACAATGGCGACGTCGTCCACAGCAACGAGGACAGGGGCGTCTACGTAGAGGATACCCTGGTCCATGACTGCTGCCTGCTCACTGGCGAGGTCGTCCTCTCCAACATCAACCACAGCCTGTCTGGCATCTGGGAGTGCCAGGTGACCAGTTCCCGTGGCAACGGGTCCAGACAGATGGAGATCCTTGTGTTGGAGACGTCAGCACCCTACTGCTCAGCAGACAGGATCAACAGCAACAAGGGGGACTTCAGGTGGCCAAAGACCCTGGCAGGGATACTGGCCTTCCTGCCCTGTGCTCCATCCACATTTGGCTATGCCCCCCGCCCTTCTGGTGCCGCTTCACACCACCTCACTCAGATGGAGAAGAAGGCCTGGCGACGCTGTGACCGGGCAGGCCGGTGGGCAGAGGATGACTATACCCAGTGCCCATATGCCAGCGAGGTGACTCGCATACTGCATGAGCTCACCCAGATGACCATCAACACCAGCAATGCCCAGGCGTTAGCCCAGCAGCTGGTAGCCTTCACCAGCAGGGCGGGGGAGTTCAGCGATGTGATGGATGTCATCTTTGTCACACACCTGGTTGAGAGGCTGACTCGCCTGGTGGACCAGCGTAGAAAACTAGGGGACTATATCTCTGACATAGCCAGTAACATGATGCTGGTGGAGGAACACATCCTGTGGATGGCTCAGAACGAGGCCCGGGCGTGTACACGCATTGTCCAGTGTGTGGAGCGCATCGCCGACTTGGCTCTCACCATAGACACGCAGGTCATATCAAAGGTGTCCCCAAACATAGCCATGGAGGCCTTTCTGATCAGGCCGTCTAACTTCCAGGGTCTTTCGTGTATGGCAGTACAGAGAGCCCCCCTGCCACCCTTCTCTGGTCAGAGGAACCAGGATGCCATCGGGGACACGCTGCTCAACTTCAAATGTCACACGGTCAACGGCAACGGCTCCCCCTCCAGCCAACTCAGCAAGAACTCGGTCGCAGTCGCCTCAATCCATTTACCGCTGGCTGGTACGCCTAGCCCCTCTGCGTTGCAATCTGTTGATAACTCGACTTGCAAGCTGCAGTTTATTGTCTTTCGAAATGGGAAACTCTTTCCTTGCACAGGGAATTCGTCAAATCTTGCAGATGATGGAAAACGTAGGAGCGTTTCGACACCAGTTGCTTTCACCAAATTAGATAGGTGCACCCTCGGGAGCGCGGTGCACTCGGTTACCATCGCTCTCAGGCACTTCGCGCTGGGTGTAGACCCCACCGCAGCCTATTGGGATTTTGACCTGCTAGATGGGCACGGTGGCTGGCGGGCAGAGGGGTGCCACATAACAGACTCCCTGGGCAGCACGACCACCATTCATTGCACTCATCACAATAACTTTGCGGTGCTAATGgatCTGAAGAAGGTGCTTTCTTTCCCCCCGTACCCTGGGGAGTTTCTGCACCCGGTCGTGTATGCCTGCACGGCCGTTATGTTGCTCTGCCTCTTCGCCTCCATCATCACCTATATCGTGCACCACAGCACAATCCGCATCAGTCGGAAGGGATGGCACATGCTCCTCAACTTCTGTTTCCACACGGCTCTGACCTTCACTGTGTTTGCCGGAGGCATCAATCGAATCAAATACCCCATCATCTGTCAAGCAGTTGGCATGGTGCTACACTACTCGTCCCTCTCCACCATGCTGTGGCTGGGGGTGATGGCCCGGAACATTTACAAGCAGGTGACCAAAAAGCCCCTGCAGCCCCAGGACGGTGACCCGTCTgccaacaccaaacagcccatGCTAAAgTTTTATTTAGTCAGTGGCGGAGTGCCCTTCATCATCTGTGGAATCACAGCAGCCATCAATATTGAGAACTATGGCAGTGGGGAGACGGCACCCTActgCTGGATGGCGTGGGAGCCCAGCCTTGGAGCCTTCTACGGCCCCGTGGCGTTCATCGTCCTGGTCACCTGCGTCTACTTCCTGTGTACCTTCATTCAGCTGAGGCGCCACCCCGAGAGAAAGTACGAGCTGAAAGCCCTGAGTGAGGAGCAGCAGAGGCTGGCATCCATCACCGACGTGGGTAGGCAttgtcatcaaggggaaggggaGCCCGGAGCCCTGCCACCACCTCCCAATGGAGGGCATTGCCATGCGGGCTGCCACTCGTCCACTGCCATCAACCCCTCTATGCTGGCCAACGAGCATTCGTTCAAGGCCCAGCTGAGGACGGCGGCCTTCACCCTCTTCTTGTTCGTGGCCACGTGGGCCTTCGGGGCGCTGGCTGTTTCACAGGGCCACTTCCTGGACATGATCTTCAGCTGCCTGTATGGTGCCTTCTCCGTCACGCTGGGCCTCTTCGTGCTCATCCACCACTGTGCCAAGCGGGACGATGTGTGGCACTGCTGGTGCGCCTGCTGCCCCGGGAGACGCGCCAACCACGGTTGCCACGGCCATGGTCACGGCCACACTCGTCCAAAGGTTAATGTCAATGGGGATGCCTTAGGGCATGGGCACGGGCATGGGCACTGCCACCTGGATTCGCCGTGCCCAGGTAAGGCCCTGTTAGGAGGACACACCCACAGTGGCACCTTGGGTCACTGTAAGCATGGCAGCCTGGCGTCGTCGCAGAACCATGTGACGTGCCTGCCCGCCGTGGTGCCGTGCTGCGCCGCCCTGCACAGCCAGCAGCTGATGGAGGAGGAGCCTCCCACACACGTGCTGCTACACGCTGACCCCGAGGGCTACCGGCCAGACATCCATCTGCATCGATGCCTGAAGGGCAGCACTAGGACTAAGCCTCGCCACTTCAGCCGTCACCGGCAGGCTGGcacaggagggggaggaggggtgggagagagggagtacgCCTATCACATCCCTACTAGTGTAGACGGAGGCTCTATCCACAGCTCCCACACAGACAGCCCTCACAGTACGCACGAGCGTCACGGACACATCTGCCACCTGGCTGCTGCCCCTAACGAAGTGGGCCACCACACTTGCCAAGCGGCAACGGCTCACGAGGCGGCGCTGGCATGCCACGCCCCCTGCCATCGGCACGTGCCTTGCTGTGCCAAGGCGGACCTGTTCCCCACTCTGTGCCAGGTGGAGGCAGGCGACACGGGCACCTTTCTGTGCGGCTGTGGCAAAATAGCCAATGAGGAGGACGTGATTATGCCTCATCACCACCTGGAGATGCACCCGCGCAGACAATCCTACCCCCAGAACCCGCCCCCCAATCAGAATGGCATCCTTAAAGGTGGCCTGCACGAGGGTTTCCTGTACGGATCAGACAGCACAGGGAATATACGCACTGGACCCTGGAAAAATGAAACTACTGTGTAGTCTAAAGATGGGGGGGGGAGATATAGGCATCCATTCCCGCCCCAGCCTCCTTCCCTCCAATCCTCAACTCACCCCTCCTTTCCTTTCTAGGAACTATAAAAATGATTTCACAACTCTTAACATCACGACTTTTACTTTTTATTCTTTGTTTGTTTTCACGTGTTCCTTGTCccatttggggtggcagggtagcctagtggttagagcgttggactagtaactggagcgttgcaagttcaaacccccgagctgacaaggtacaaatctgtcattctgcccctgaacaggcagttaacccactaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaaaatacaaATTCACTTGACAGATTATCTGACATTGTCATATAAAGATCCCGATGACCAGCCATACAGAACTGATTTTTCTCCTTCATAGAGGAATGTGAGTTCCATGTGCGAGTTACAGTACCTTTTGTCAAAGGTATTTTTACCACTATACtatatgttattattattattattattattattacagatCTATCGAGGATGGAgattatggatgtgtgtgtggatgtgtgtgtgaacagaaCACCCGTGTTTATTCTTGCTCAAAGCAAATGAGATTGCGTTCTATTTTGTGAGTCCCTAAAATCCTCCGACTACTCTCTGACTTGTGTACCTGCAGTACTTCAAGAAGCTCAGTATCAGTGTTTTAGGCAAACACACCAGCAATTTAGAGTCATTGGTATTTTTGCCATTTTTAACAAAAAGCATACTTACTATAATATACTGTGAATATCAGTTAGAGATTATCTTAGTAATATACAAAGATGTCTACTCTCGTCAGAGTTCCGTGGATGCCGATACGttgtgaaaatgtaaaaaaaacaaaaaatacacaTTGGAAAAACCGAAACCACATTGAGTATTCTGTTACAGGTTGATATTGAATGTTCTTGTCTGTATGATGTCTtactgttgtgttttttttttttttagagcgAAGTGTACAACAACAGTCACATTGTCATTGTGTATATTTGCGGTGTTGGTGCGATAGTGACATCACATGCCATGACCAAGCAGCAGCCGTTCCAGGCTCAACCCTTTCCTCTTGCCCCATTTGATATACAGTAAAACCAAGCCAACATTTTCCATCTCTGGCAAGGCATCACAAAATGGTTGGAGGTTCATTCAATGGGTCACGTCCGAAATCAATGCTTAAACACAATATTTCATTTCTTTATAGGAAACAGAGCATGCGAGCCTTGTATGTAGCTTTGTgctgtgtttttgctttgtatatCAATGCACATTTCTTGAAAAACGCCATCACTTTTGTCTATGGAGCAGATCAAGCTGTGTTCGCTTATAACATGCCGTGAaacaaacaattatatttttacACGATTTTTAGTATCATTATGCCATTATTATGGATGCTCCTgaaaccatgttctgttaagggACAGAGGACAGGGCAGAGGATTCAGTGTTGAACATTTAACCTTATACAGGTGGTATTATGTATGGCGGCCCTaagagccaatttatgcttgattcAAAAAATGTGGTGGGAGGCGCTGTAGGGatggtgtgacgcaattgcggagCCTCTGGAGGCACGccgaggccaaattgagctccgtACCACATCGCCGTGTGCTccgtatagctccgcattgacatggtTGGTTAACGGTAGGCGAGGGCTTAAAGTCCTGCCTAAACACAAatcaacttccttcacaacagctctgctttGCGAAGCGCAAGAAGTAAGAATGCCCCTGACTTCCGCAGAGGCcatatcaccgtaaatgctgcgCGGCCAATGCAGCCGTCAGATTGACCACGCAGCGCCTTTTAAGTGGCAAAGTAATTTAAGAAAATCTCATTTGGCTCCCTCAGGGCCACCGTAGTTATGTTCGGTATGGAAACCAGTCAttccagagtgagagagaactgACAAGGTTAATAGAGAAACAATTCCCTACCTACAAGAATACAGCAACTCCTGCCTGGCCAAAACCACCTTGGCGCGCCACACCGTCCATCCATCTTGTGCACTCTTGTCTATGTCCATAGAATTGGTTCTGATGAGTTCTTTTTTTTATACAAGATTTAAAATGTTAAAAAgagtaaataaatatatatgtattgaAAATGTATGGGAAAGACCTCTTAATGTTAATGCTCAGTATCTGAGTTTAGAAATGTAATTTGTTCTTGGTGCATTTTTCCGTTTGCTTGTATTTTTGTTCTGATCTTTCATAAAGGGTATGAGGACTGGCCATatattttgttacatttgacACATAGATGCACTAACCGCTATGGGATACCGGGACTTCATGTCACACACGTCAACTGTGATTCAATTGTGATCTGAAATCAACAAGGGACTTGATTTTAGAAAGAAATGTTAGAATTTCTGAAAAGAGAGCATTTTTAGATGTACATACGTAAAATGAATATTTCTGATTTTGGAAGACAAACACTGACCGGTAGCAAAATGAGCCGCCATGAGACTTCAAGACTATGTCAGACGAATATCGATGCTGTGTAACAGTTTCACTAAATAAACCTAACATCCTTGGTATTCTTAAATCATCCCTGCATTAAACATGTCTATGAGAGACTACATTGCTTTGGTCTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78186 lncRNA downstream 9343 63654037 ~ 63685264 (-) True G70655
TU78174 lncRNA downstream 62469 63630645 ~ 63632138 (-) True LOC110532553
TU78180 lncRNA downstream 64958 63629297 ~ 63629649 (-) True vox
TU77904 lncRNA downstream 78346 63616056 ~ 63616261 (-) True G70385
TU77867 lncRNA downstream 131699 63562528 ~ 63562908 (-) True G70352
TU78656 lncRNA upstream 189896 64170611 ~ 64171010 (-) True G71107
TU78659 lncRNA upstream 192410 64173125 ~ 64173350 (-) True G71110
TU78734 lncRNA upstream 248103 64228818 ~ 64229027 (-) True G71183
TU78755 lncRNA upstream 265430 64246145 ~ 64246373 (-) True G71204
TU78759 lncRNA upstream 267822 64248537 ~ 64248808 (-) True G71208
XM_021608008.2 mRNA downstream 15394 63654551 ~ 63679213 (-) False LOC110526802
XM_021607996.2 mRNA downstream 15395 63654637 ~ 63679212 (-) False LOC110526802
XM_021608003.2 mRNA downstream 15395 63654637 ~ 63679212 (-) True LOC110526802
XM_036982654.1 mRNA downstream 39971 63630570 ~ 63654636 (-) False LOC110532553
XM_036982664.1 mRNA downstream 64189 63628235 ~ 63630418 (-) False vox
XM_021608051.2 mRNA upstream 68398 64049113 ~ 64114724 (-) True LOC110526858
XM_021608058.2 mRNA upstream 389088 64369803 ~ 64384521 (-) False LOC110526867
XM_036982722.1 mRNA upstream 491687 64472402 ~ 64735578 (-) False LOC110526894
XM_036982729.1 mRNA upstream 491687 64472402 ~ 64735579 (-) False LOC110526894
XM_036982713.1 mRNA upstream 491687 64472402 ~ 64735580 (-) False LOC110526894
TU77510 other downstream 416855 63277208 ~ 63277752 (-) True G70013
TU76624 other downstream 1276311 62411522 ~ 62418296 (-) True G69210
TU76326 other downstream 1712212 61981731 ~ 61982395 (-) True LOC110526417
TU76069 other downstream 2008299 61682278 ~ 61686308 (-) True G68736
TU74240 other downstream 3233373 60430207 ~ 60461234 (-) True LOC110526097
TU78947 other upstream 389187 64369902 ~ 64381356 (-) True LOC110526867
TU82292 other upstream 2838129 66818844 ~ 66822816 (-) False tjap1
TU82368 other upstream 3013967 66994682 ~ 67010587 (-) True LOC110527436
TU83185 other upstream 3405794 67386509 ~ 67388044 (-) True LOC110527584
TU83338 other upstream 3688874 67669589 ~ 67681730 (-) False LOC110527687

Expression Profile