RNA id: TU78172


Basic Information

Item Value
RNA id TU78172
length 2601
lncRNA type sense_over
GC content 0.45
exon number 2
gene id LOC110526836
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 63694607 ~ 63980715 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtacgCCTATCACATCCCTACTAGTGTAGACGGAGGCTCTATCCACAGCTCCCACACAGACAGCCCTCACAGTACGCACGAGCGTCACGGACACATCTGCCACCTGGCTGCTGCCCCTAACGAAGTGGGCCACCACACTTGCCAAGCGGCAACGGCTCACGAGGCGGCGCTGGCATGCCACGCCCCCTGCCATCGGCACGTGCCTTGCTGTGCCAAGGCGGACCTGTTCCCCACTCTGTGCCAGGTGGAGGCAGGCGACACGGGCACCTTTCTGTGCGGCTGTGGCAAAATAGCCAATGAGGAGGACGTGATTATGCCTCATCACCACCTGGAGATGCACCCGCGCAGACAATCCTACCCCCAGAACCCGCCCCCCAATCAGAATGGCATCCTTAAAGGTGGCCTGCACGAGGGTTTCCTGTACGGATCAGACAGCACAGGGAATATACGCACTGGACCCTGGAAAAATGAAACTACTGTGTAGTCTAAAGATGGGGGGGGGAGATATAGGCATCCATTCCCGCCCCAGCCTCCTTCCCTCCAATCCTCAACTCACCCCTCCTTTCCTTTCTAGGAACTATAAAAATGATTTCACAACTCTTAACATCACGACTTTTACTTTTTATTCTTTGTTTGTTTTCACGTGTTCCTTGTCccatttggggtggcagggtagcctagtggttagagcgttggactagtaactggagcgttgcaagttcaaacccccgagctgacaaggtacaaatctgtcattctgcccctgaacaggcagttaacccactaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaaaatacaaATTCACTTGACAGATTATCTGACATTGTCATATAAAGATCCCGATGACCAGCCATACAGAACTGATTTTTCTCCTTCATAGAGGAATGTGAGTTCCATGTGCGAGTTACAGTACCTTTTGTCAAAGagcgAAGTGTACAACAACAGTCACATTGTCATTGTGTATATTTGCGGTGTTGGTGCGATAGTGACATCACATGCCATGACCAAGCAGCAGCCGTTCCAGGCTCAACCCTTTCCTCTTGCCCCATTTGATATACAGTAAAACCAAGCCAACATTTTCCATCTCTGGCAAGGCATCACAAAATGGTTGGAGGTTCATTCAATGGGTCACGTCCGAAATCAATGCTTAAACACAATATTTCATTTCTTTATAGGAAACAGAGCATGCGAGCCTTGTATGTAGCTTTGTgctgtgtttttgctttgtatatCAATGCACATTTCTTGAAAAACGCCATCACTTTTGTCTATGGAGCAGATCAAGCTGTGTTCGCTTATAACATGCCGTGAaacaaacaattatatttttacACGATTTTTAGTATCATTATGCCATTATTATGGATGCTCCTgaaaccatgttctgttaagggACAGAGGACAGGGCAGAGGATTCAGTGTTGAACATTTAACCTTATACAGGTGGTATTATGTATGGCGGCCCTaagagccaatttatgcttgattcAAAAAATGTGGTGGGAGGCGCTGTAGGGatggtgtgacgcaattgcggagCCTCTGGAGGCACGccgaggccaaattgagctccgtACCACATCGCCGTGTGCTccgtatagctccgcattgacatggtTGGTTAACGGTAGGCGAGGGCTTAAAGTCCTGCCTAAACACAAatcaacttccttcacaacagctctgctttGCGAAGCGCAAGAAGTAAGAATGCCCCTGACTTCCGCAGAGGCcatatcaccgtaaatgctgcgCGGCCAATGCAGCCGTCAGATTGACCACGCAGCGCCTTTTAAGTGGCAAAGTAATTTAAGAAAATCTCATTTGGCTCCCTCAGGGCCACCGTAGTTATGTTCGGTATGGAAACCAGTCAttccagagtgagagagaactgACAAGGTTAATAGAGAAACAATTCCCTACCTACAAGAATACAGCAACTCCTGCCTGGCCAAAACCACCTTGGCGCGCCACACCGTCCATCCATCTTGTGCACTCTTGTCTATGTCCATAGAATTGGTTCTGATGAGTTCTTTTTTTTATACAAGATTTAAAATGTTAAAAAgagtaaataaatatatatgtattgaAAATGTATGGGAAAGACCTCTTAATGTTAATGCTCAGTATCTGAGTTTAGAAATGTAATTTGTTCTTGGTGCATTTTTCCGTTTGCTTGTATTTTTGTTCTGATCTTTCATAAAGGGTATGAGGACTGGCCATatattttgttacatttgacACATAGATGCACTAACCGCTATGGGATACCGGGACTTCATGTCACACACGTCAACTGTGATTCAATTGTGATCTGAAATCAACAAGGGACTTGATTTTAGAAAGAAATGTTAGAATTTCTGAAAAGAGAGCATTTTTAGATGTACATACGTAAAATGAATATTTCTGATTTTGGAAGACAAACACTGACCGGTAGCAAAATGAGCCGCCATGAGACTTCAAGACTATGTCAGACGAATATCGATGCTGTGTAACAGTTTCACTAAATAAACCTAACATCCTTGGTATTCTTAAATCATCCCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78186 lncRNA downstream 9384 63654037 ~ 63685264 (-) True G70655
TU78174 lncRNA downstream 62510 63630645 ~ 63632138 (-) True LOC110532553
TU78180 lncRNA downstream 64999 63629297 ~ 63629649 (-) True vox
TU77904 lncRNA downstream 78387 63616056 ~ 63616261 (-) True G70385
TU77867 lncRNA downstream 131740 63562528 ~ 63562908 (-) True G70352
TU78218 lncRNA upstream 27407 63725173 ~ 63725436 (-) True G70687
TU78271 lncRNA upstream 99895 63797661 ~ 63798209 (-) True G70740
TU78284 lncRNA upstream 110054 63807820 ~ 63808085 (-) True G70753
TU78300 lncRNA upstream 126501 63824267 ~ 63824474 (-) True G70769
TU78656 lncRNA upstream 472845 64170611 ~ 64171010 (-) True G71107
XM_021608008.2 mRNA downstream 15435 63654551 ~ 63679213 (-) False LOC110526802
XM_021607996.2 mRNA downstream 15436 63654637 ~ 63679212 (-) False LOC110526802
XM_021608003.2 mRNA downstream 15436 63654637 ~ 63679212 (-) True LOC110526802
XM_036982654.1 mRNA downstream 40012 63630570 ~ 63654636 (-) False LOC110532553
XM_036982664.1 mRNA downstream 64230 63628235 ~ 63630418 (-) False vox
XM_021608051.2 mRNA upstream 351347 64049113 ~ 64114724 (-) True LOC110526858
XM_021608058.2 mRNA upstream 672037 64369803 ~ 64384521 (-) False LOC110526867
XM_036982722.1 mRNA upstream 774636 64472402 ~ 64735578 (-) False LOC110526894
XM_036982729.1 mRNA upstream 774636 64472402 ~ 64735579 (-) False LOC110526894
XM_036982713.1 mRNA upstream 774636 64472402 ~ 64735580 (-) False LOC110526894
TU77510 other downstream 416896 63277208 ~ 63277752 (-) True G70013
TU76624 other downstream 1276352 62411522 ~ 62418296 (-) True G69210
TU76326 other downstream 1712253 61981731 ~ 61982395 (-) True LOC110526417
TU76069 other downstream 2008340 61682278 ~ 61686308 (-) True G68736
TU74240 other downstream 3233414 60430207 ~ 60461234 (-) True LOC110526097
TU78947 other upstream 672136 64369902 ~ 64381356 (-) True LOC110526867
TU82292 other upstream 3121078 66818844 ~ 66822816 (-) False tjap1
TU82368 other upstream 3296916 66994682 ~ 67010587 (-) True LOC110527436
TU83185 other upstream 3688743 67386509 ~ 67388044 (-) True LOC110527584
TU83338 other upstream 3971823 67669589 ~ 67681730 (-) False LOC110527687

Expression Profile