RNA id: XM_021608058.2


Basic Information

Item Value
RNA id XM_021608058.2
length 3354
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110526867
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 64369803 ~ 64384521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGATACTTTAAGAATTGCAGTAAATGGTGTTTCTTATACCGAGGCATCAGAGATCTACAAACCACATGCTGATCCGTTCACTGGTCCAATAACAAATCTTGCACCTTGGAATTTCGCAGTTTTGGCTACCTTGATGTTTGTTataacatctctgtctctctttgaaaATTTCACTGTTATGTTGGCCACTTACAAGTTCAAACAACTGAGACAGCCCTTAAATTATATCATAGTTAATTTATCTCTCGCTGACTTCCTTGTGTCACTCACCGGTGGAACCATAAGTTTTCTAACTAACGCCAAAGGGTATTTTTTCCTTGGAAATTGGGCTTGCGTTTTGGAAGGTTTTGCTGTCACCTATTTCGGGATTGTGGCTATGTGGTCCCTGGCGGTCCTGTCCTTCGAGCGCTACTTTGTGATCTGCCGGCCTCTGGGGAATGTCCGTCTGAGGGGGAAGCATGCAGCGCTGGGCCTGCTGTTCGTCTGGACCTTCTCCTTCATCTGGACTATCCCTCCTGTGTTCGGCTGGTGCAGCTACACCGTCAGTAAGATCGGCACCACCTGCGAGCCCAATTGGTATTCCAACAACATTTGGAATCACACCTACATCATCACCTTCTTTGTGACCTGCTTCATAATGCCCTTGGGGGTGATCATCTACTGCTATGGGAAGCTCCTACAGAAGCTGAGGAAGGTGTCCCATGGCAGGCTGGGTAATGCCAAGAAACCGGAGCGCCAGGTGAGCcgcatggtggtggtgatgatcgTCGCTTACCTGGTGGGCTGGACACCCTACGCAGCCTTCTCCATCATTGTCACAGCCTGTCCCACCATCTACCTGGACCCCAGACTGGCTGCCGCGCCCGCTTTCTTCTCCAAGACGGCCGCAGTCTACAACCCAGTCATCTACGTCTTCATGAACAAACAGTTCAGGAAGTGTCTGATCCAGCTCTTTACCGGCAAGCCTGCGCCAGAGAACATGAACGCAACATCGCAGCGACCGGGAATGACGGGGGAGAGCTGCACGGGGGGCGAGATGTCAGCCATCGCCGCCCGCATCCCGGTCTGCGGCAATGCTCAGCCTAAGAATGAGGAGGAGTCCCCGAGCGAGTGCAGCTCCGTCGCCCAGCTACCGATCCCAGAGAACAAAGTCTGTCCCATGTAGGCCAACAGAAGACTCCCCTCCCCCCCACCTCCAGTCCTCACTGCCTTTACATCCTCCCTTTCCATTCTTATACAGATGCATCTTCTCTTACTCACAAACTTCTTGTGATAATTGTTAGTTTAAAGATGCCAGCTGTAACCACAAAGGTTCTCTGGTTAACTTTGTATGTATTAGTAAAAATAGAGGAAACATGTCCGAAACCGGAGCACAAAAGAGGGACATAATACTTTAATGTATGGCAAGCAGACAGACTACCCAGACTGCCTCTCTCTGCTGGCTTTCATCTGAGCCTAAGCAGGGTCAGGCCTGATTGATGTCTAGGTAGGAGACCAGATGCTGTTGGAAGTGGTGTTAGAGGGCCAGTGAGAGGCATTCTTCCCGCCTCAATACCTTAGGCTGTGATGGGGAAACTGCCACCCAAAGGGTGCCCTTAAACCAAGGTCCTGACTCTTATAcaatcatggccacctaatcctCCCGTTAGCCCTCTCTCCACTACAATACAAGATTCTTTCAGCACGAAAACCGCTAATTCTTTAAGTCCCCTCCATCATTACTTATCATTATTATGACAAGAACATTAAATGCTTGTTGACAGTGATTAAATATTAACAATTCAGCAAGCTAGAAATCGTGGCTGTAAATGTAGTATTTGCTTGTCAGATTCCCTCCCACTTTACTCGAGTCGTGAGTTATTTTTGTTCTGGTAGGCCTAATTATTATCAGCTACCTAACAGTTTGTTGTATTAGAGGGGGCCCGTACACACTCAGCTGGTACAACTGATGTACTCTTTGTTGTATCACAACTGCTGTGCCAAATGCGCTGCACATCAGTTGTACAACTTGAGTGTGCACCACCTGCATTATCACGGTTGTCAGAGGGGGCAGGTGCCGAGTCCTACTCTTACCCAGAAGAGCCAGACTTAGAAGATGAGAGCTGGCTACCGTCAGAATGCTTTAATCTGTAGCTCTTTTCCCCTTTGAAGCCCCTGTGATGGCAACTGCTGAGAGGGTATTGCTTTCTATGTTTCTGTACATTTTTCGTTCTCTTCTTGAGCAGATTCGATGGCGAAATTTCCGTTCAAAACAAAGACAGTTAATGAGGCTTGGTGCAGCTGGCCCCCTGCTGGCTCTACTGGGACACTGAGAGACTGTATATTTATGATGAGTCCACAAAAAAATCCTTTCTTTCTTCAACACACTGTGACTGTACATTGTATGTCGAGAAATAATGTATATGGGACTCTGTGAAGGGGTCCAGTGAATCCGAGTAGCTCTGCTCATCATTAGCGCCGACAAATATCGTTGCATTGTACACAAAAGCATTGTACAATGAGGATCACATCACAAAGCATGGGTCTACAGTCAGCAATATTGTAGCACAAGATACTGTAACACTTGACTTTAGAACTGGTTACAGTAGATGTAGTAATACGTTTCAGGTGTATtcaaacttatgtaaatgtatctTGACAACGTCTCTTGTTCACCATTCTGTGCAGCACCATCATTGAATAAGTtgaacagtaataataataatgtgataATATCCATATGCCGGGTACAGCAGAGACCCTGATCATATTGCATGAGTCAGTCTCAACAAATACATAATGTACAAATTCATCTCGCATTGCCACACTTCATGGTCTTGTTCACTGGCCTATTGGAACGAATGTAACAAAGCCGGAAAATGAAGGTTTGTATGAATAAGGGCTGAGtctccacaaggatagtaaaacgaaaacacacacacacacacacacacacaaatgcacacacaaactGTAGGCCTATACACGTTGCACACACAAAAGCAATATGACAATGTTCCGTTTTTTTCAGGATACATGAGCAGGTAGTAGGGGTGGTAACTCGCCTTCGAGAATACAGGGAGAGGAACATTTTTAAGAACACATCAGAGATTTGGACACGAATATGACTGATATACTGATAAGTTGAAGAAGCAGTCCAAATGTGGACAAATAAgtataatttatatatttttctcattttTGCCCGGACTATCATGCACCTCCGACAGTGTTTGTTGTATTGTACTTACAGTGGCACGTTGAGAATTGTTCTGCTGTGTTTTTGGTGTAACTATTTCGTCATGAGTTGCAGGTCATGCATGCTAGTTGTTAGAAAAACTAATGTCTGTACtggattaaaatatatattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78759 lncRNA downstream 120995 64248537 ~ 64248808 (-) True G71208
TU78755 lncRNA downstream 123430 64246145 ~ 64246373 (-) True G71204
TU78734 lncRNA downstream 140776 64228818 ~ 64229027 (-) True G71183
TU78659 lncRNA downstream 196453 64173125 ~ 64173350 (-) True G71110
TU78656 lncRNA downstream 198793 64170611 ~ 64171010 (-) True G71107
TU79008 lncRNA upstream 57451 64441972 ~ 64442508 (-) True G71450
TU79729 lncRNA upstream 87894 64472415 ~ 64492038 (-) False LOC110526894
TU79727 lncRNA upstream 89211 64473732 ~ 64492709 (-) True LOC110526894
TU79779 lncRNA upstream 154014 64538535 ~ 64539137 (-) False G72176
TU79780 lncRNA upstream 154014 64538535 ~ 64539137 (-) True G72176
XM_021608051.2 mRNA downstream 255079 64049113 ~ 64114724 (-) True LOC110526858
XM_036982667.1 mRNA downstream 389088 63694607 ~ 63980715 (-) False LOC110526836
XM_036982670.1 mRNA downstream 389088 63694607 ~ 63980715 (-) False LOC110526836
XM_021608008.2 mRNA downstream 690590 63654551 ~ 63679213 (-) False LOC110526802
XM_036982722.1 mRNA upstream 87881 64472402 ~ 64735578 (-) False LOC110526894
XM_036982729.1 mRNA upstream 87881 64472402 ~ 64735579 (-) False LOC110526894
XM_036982713.1 mRNA upstream 87881 64472402 ~ 64735580 (-) False LOC110526894
XM_036982718.1 mRNA upstream 87881 64472402 ~ 64735581 (-) False LOC110526894
XM_021608109.2 mRNA upstream 407839 64792360 ~ 64801657 (-) False LOC110526927
TU77510 other downstream 1092051 63277208 ~ 63277752 (-) True G70013
TU76624 other downstream 1951507 62411522 ~ 62418296 (-) True G69210
TU76326 other downstream 2387408 61981731 ~ 61982395 (-) True LOC110526417
TU76069 other downstream 2683495 61682278 ~ 61686308 (-) True G68736
TU74240 other downstream 3908569 60430207 ~ 60461234 (-) True LOC110526097
TU82292 other upstream 2434323 66818844 ~ 66822816 (-) False tjap1
TU82368 other upstream 2610161 66994682 ~ 67010587 (-) True LOC110527436
TU83185 other upstream 3001988 67386509 ~ 67388044 (-) True LOC110527584
TU83338 other upstream 3285068 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other upstream 3285068 67669589 ~ 67681730 (-) True LOC110527687

Expression Profile