RNA id: XM_021608102.2


Basic Information

Item Value
RNA id XM_021608102.2
length 1924
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC110526912
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 64773915 ~ 64783737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAATATATGGAAAATGTCTATACAGTTCAGCTGTTTTAAAAATATTTCTCTGCTATTAAGATTTTTTATTGTACGAACATTTGGCTTGAGACAATTCTAAACTCTACTGCTTGGGATCGGGGCAAGTCTAGGAGCAGTCTCGCACACTACCTACGAAGGTGACATACGAGATATAAAAAatgtatactacagtaatatgtgTACACGCAGGTATTAAACTCTCTTGTAAATGTACGTAGTGTAAATTACCCCTTTAGAAATTTGAAATTGCTAAGGGATGCATTTGCTCAATTGTTTGATCTTATTTGCAGTGAGGTTTTAAGTCATGAGTCAACTACCTAGATTCTGGAACCTGGGATGGTCTTCCTTCATTGACTGGTGGAGTAGTCAGAGTGCTTCAGAGCAAGACTGTGTGACAACTACAGGACCTTCTCAACCCTATGGTCAGCAGCACCTGAATGAACCTCTTCTGGACCACAGAGAGGGTCAGCTCTTCCTGACCGAGGCTTTTAAAGTCATCCTTGAGGAGGTGCTATGTAAGGGCATAGACGTCAACGAGAAGGTTTGTGAGTGGCGCGAGCCAGAGGAGTTGGCTACTCTGCTAGATCTGGAGCTGAGAGAGTATGGGGAGCAACAGCACCAGCTGCTGCAGAGAGTACGGGATGTGGCCAAGTACAGCGTCAAGACCAATCATCCGCGGTTCTTCAATCAGCTCTTTGCAGGGGTGGACTACCATGCCTTGACAGGACGATTCCTTACGGAGGCTCTTAACACTAGCCAGTATACCTATGAAGTAGCGCCAGTGTTCGTCCTGATGGAAGACGAGGTACTCTCCAAGCTACGTTCTCTAGTTGGGTGGGCACAGGGAGATGGCATCTTCTGCCCAGGCGGTACCATGTCTAACATGTATGCCATGAACCTAGCACGCTATCGGGCCTTCCCAGAAGTTAAACTTAAGGGGCAGTGGGCCCTCCCTCGACTGGCTGTCTTTACATCTCAAGAGAGCCATTACTCTGTGATGAAAGCAGCGGCCTTTCAGGGCATTGGGACAGAGAACGTGTTTAAGGTCAACGTGGATGATAGGGGTTGCATGATTACAGATGACCTTAGTGAGAAAATTGAGCTGGCGAAATCTCAAGGGGCAGTACCATTCCTTGTCCACGCCACGTCAGGAACGACTGTACAAGGTGCCTTCGACCCCCTGGAGCCCATCGCTGACATCTGTGACAGACAGGGGTTATGGATGCATGTTGATGCAGCCTGGGGAGGGAGTGTTCTCTTCTCAAAGGAACACAGACATCTCATGAGAGGAGTTGAGAGAGCCGATTCAGTAACTTGGAATCCACACAAGATGATGCTGACTGGCTTGCAGTGTTCAGCCGTTCTGCTCAAGGACACCACGGACCTGTTGAAACGTTGCCACAGTGCAGATGCAACATACCTCTTCCAGCAGGACAAGTTCTATGACATGAGTCTGGACACAGGGGACAAGTCGATACAGTGCGGCCGTAAGGTTGACTGCCTGAAGCTGTGGTTGATGTGGAAAGCTGTGGGGTCACAAGGCTTGGAAGAGCGTGTGGACAGGGCTTTCGCCCATACAAGATATCTGGTGGAGGAGATGATGAAAAGAGAGGGCTTTCAACTTATAGGGAAGCCTGAGTTTGTGAACGTGTGTTTCTGGTTCATACCACCCAGTCTGAGGGGAAAGGAGAACAGTCCAGACTACCAGGACAGATTGTCAAAGGTTGGTGGCTCCAGTGATAAAGGAGCGTATGATTAAGCAGGGTACTATGATGGTGGGCTACCAGCCTCTGGGTGGACGAGTCAACTTCTTCCGCATGATTGTCATCTCTCCGCAGCTCTCCTACCAAGATATGACCTTCTTTCTGGATGAGATTGAGAGGCTAGGGAATAATCTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79030 lncRNA upstream 313546 64460165 ~ 64460369 (+) True G71472
TU79026 lncRNA upstream 315005 64458532 ~ 64458910 (+) True G71468
TU79022 lncRNA upstream 317782 64455663 ~ 64456133 (+) True G71464
TU79014 lncRNA upstream 326221 64447482 ~ 64447694 (+) True G71456
TU79007 lncRNA upstream 331445 64441931 ~ 64442470 (+) True G71449
TU79372 lncRNA downstream 122797 64905999 ~ 64932480 (+) True G71779
TU79234 lncRNA downstream 160132 64943334 ~ 64985289 (+) True G71653
TU79236 lncRNA downstream 204026 64987228 ~ 64991904 (+) True G71654
TU79419 lncRNA downstream 221083 65004285 ~ 65037581 (+) True G71826
TU79450 lncRNA downstream 285182 65068384 ~ 65115001 (+) True LOC110527013
XM_021608067.2 mRNA upstream 302831 64468523 ~ 64471084 (+) False LOC110526877
XM_021608072.2 mRNA upstream 302831 64468524 ~ 64471084 (+) True LOC110526877
XR_005052510.1 mRNA upstream 775614 63981133 ~ 63998301 (+) False LOC118965254
XR_002474022.2 mRNA upstream 1152486 63620237 ~ 63621429 (+) True LOC110526795
XM_021607970.2 mRNA upstream 1175109 63565503 ~ 63598806 (+) False LOC110526778
XM_021608144.2 mRNA downstream 26053 64809255 ~ 64946164 (+) False LOC110526969
XM_021608165.2 mRNA downstream 189192 64972394 ~ 64984304 (+) True LOC110526991
XM_036982824.1 mRNA downstream 209868 64993070 ~ 65016685 (+) True LOC110532561
XM_021608175.2 mRNA downstream 238001 65021203 ~ 65041610 (+) True LOC110527002
XM_021608186.2 mRNA downstream 284886 65068088 ~ 65120931 (+) False LOC110527013
TU77508 other upstream 1498619 63274963 ~ 63275296 (+) True G70011
TU75188 other upstream 3040527 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 3458663 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 4831851 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 5448786 59324636 ~ 59325129 (+) True G65442
TU79281 other downstream 26387 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 1132533 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 1132533 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 1504477 66287679 ~ 66288469 (+) True G73515
TU81346 other downstream 1637293 66420495 ~ 66424081 (+) True LOC118965274

Expression Profile