RNA id: XM_021608095.2


Basic Information

Item Value
RNA id XM_021608095.2
length 2235
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC110526912
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 64773915 ~ 64783737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTCTTGTAAATGTACGTAGTGTAAATTACCCCTTTAGAAATTTGAAATTGCTAAGGGATGCATTTGCTCAATTGTTTGATCTTATTTGCAGTGAGGTTTTAAGTCATGAGTCAACTACCTAGATTCTGGAACCTGGGATGGTCTTCCTTCATTGACTGGTGGAGTAGTCAGAGTGCTTCAGAGCAAGACTGTGTGACAACTACAGGACCTTCTCAACCCTATGGTCAGCAGCACCTGAATGAACCTCTTCTGGACCACAGAGAGGGTCAGCTCTTCCTGACCGAGGCTTTTAAAGTCATCCTTGAGGAGGTGCTATGTAAGGGCATAGACGTCAACGAGAAGGTTTGTGAGTGGCGCGAGCCAGAGGAGTTGGCTACTCTGCTAGATCTGGAGCTGAGAGAGTATGGGGAGCAACAGCACCAGCTGCTGCAGAGAGTACGGGATGTGGCCAAGTACAGCGTCAAGACCAATCATCCGCGGTTCTTCAATCAGCTCTTTGCAGGGGTGGACTACCATGCCTTGACAGGACGATTCCTTACGGAGGCTCTTAACACTAGCCAGTATACCTATGAAGTAGCGCCAGTGTTCGTCCTGATGGAAGACGAGGTACTCTCCAAGCTACGTTCTCTAGTTGGGTGGGCACAGGGAGATGGCATCTTCTGCCCAGGCGGTACCATGTCTAACATGTATGCCATGAACCTAGCACGCTATCGGGCCTTCCCAGAAGTTAAACTTAAGGGGCAGTGGGCCCTCCCTCGACTGGCTGTCTTTACATCTCAAGAGAGCCATTACTCTGTGATGAAAGCAGCGGCCTTTCAGGGCATTGGGACAGAGAACGTGTTTAAGGTCAACGTGGATGATAGGGGTTGCATGATTACAGATGACCTTAGTGAGAAAATTGAGCTGGCGAAATCTCAAGGGGCAGTACCATTCCTTGTCCACGCCACGTCAGGAACGACTGTACAAGGTGCCTTCGACCCCCTGGAGCCCATCGCTGACATCTGTGACAGACAGGGGTTATGGATGCATGTTGATGCAGCCTGGGGAGGGAGTGTTCTCTTCTCAAAGGAACACAGACATCTCATGAGAGGAGTTGAGAGAGCCGATTCAGTAACTTGGAATCCACACAAGATGATGCTGACTGGCTTGCAGTGTTCAGCCGTTCTGCTCAAGGACACCACGGACCTGTTGAAACGTTGCCACAGTGCAGATGCAACATACCTCTTCCAGCAGGACAAGTTCTATGACATGAGTCTGGACACAGGGGACAAGTCGATACAGTGCGGCCGTAAGGTTGACTGCCTGAAGCTGTGGTTGATGTGGAAAGCTGTGGGGTCACAAGGCTTGGAAGAGCGTGTGGACAGGGCTTTCGCCCATACAAGATATCTGGTGGAGGAGATGATGAAAAGAGAGGGCTTTCAACTTATAGGGAAGCCTGAGTTTGTGAACGTGTGTTTCTGGTTCATACCACCCAGTCTGAGGGGAAAGGAGAACAGTCCAGACTACCAGGACAGATTGTCAAAGGTGGCTCCAGTGATAAAGGAGCGTATGATTAAGCAGGGTACTATGATGGTGGGCTACCAGCCTCTGGGTGGACGAGTCAACTTCTTCCGCATGATTGTCATCTCTCCGCAGCTCTCCTACCAAGATATGACCTTCTTTCTGGATGAGATTGAGAGGCTAGGGAATAATCTATGATAGTCATTCTAGTTATCGCCTTGCATCTCCATTTATGTCACTGACTCCTCTGGCTCCCAGAATCTGTTTTCTAACAATAATATTACTTGTTTTCTACAGTTTTGGGGGAAGCTActttgaaaatatagtttactaaGCTACTAATTACTTCACAATGGAAGAAGTTAAGATACCCTTAAGAAAAACAATTTGCTTAACTAAAGTTACATTGAAAAAGTAGCTCACTACATACAACTTTGTgataaagtatatatatatatatatattgtatggtCTTTATGTATTATTTGGTTGTAGAACATGATGTAGGAGGTCCTTCTGAAAAATACCCATGACAGATGCCAAGGGAAGCCTGATCAATGCCATGAAGcattgagacagacagaggagcccATGAGCTGTGGGCTGCAGCGGAACCATGTCAACATCCTGGACACGGTTGCATGGACGAAGTCGCCCCTGCATAAACAGTGAACTTGAGTGACCCAGCGTGCATGGATTAAAGATGGCCTTGTCTGAGAAGGGTGGATGCTTA

Function

GO: NA

KEGG:

id description
K18966 GADL1, CSAD; sulfinoalanine decarboxylase / aspartate 1-decarboxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79030 lncRNA upstream 313766 64460165 ~ 64460369 (+) True G71472
TU79026 lncRNA upstream 315225 64458532 ~ 64458910 (+) True G71468
TU79022 lncRNA upstream 318002 64455663 ~ 64456133 (+) True G71464
TU79014 lncRNA upstream 326441 64447482 ~ 64447694 (+) True G71456
TU79007 lncRNA upstream 331665 64441931 ~ 64442470 (+) True G71449
TU79372 lncRNA downstream 122262 64905999 ~ 64932480 (+) True G71779
TU79234 lncRNA downstream 159597 64943334 ~ 64985289 (+) True G71653
TU79236 lncRNA downstream 203491 64987228 ~ 64991904 (+) True G71654
TU79419 lncRNA downstream 220548 65004285 ~ 65037581 (+) True G71826
TU79450 lncRNA downstream 284647 65068384 ~ 65115001 (+) True LOC110527013
XM_021608067.2 mRNA upstream 303051 64468523 ~ 64471084 (+) False LOC110526877
XM_021608072.2 mRNA upstream 303051 64468524 ~ 64471084 (+) True LOC110526877
XR_005052510.1 mRNA upstream 775834 63981133 ~ 63998301 (+) False LOC118965254
XR_002474022.2 mRNA upstream 1152706 63620237 ~ 63621429 (+) True LOC110526795
XM_021607977.2 mRNA upstream 1175329 63565503 ~ 63598806 (+) True LOC110526778
XM_021608144.2 mRNA downstream 25518 64809255 ~ 64946164 (+) False LOC110526969
XM_021608165.2 mRNA downstream 188657 64972394 ~ 64984304 (+) True LOC110526991
XM_036982824.1 mRNA downstream 209333 64993070 ~ 65016685 (+) True LOC110532561
XM_021608175.2 mRNA downstream 237466 65021203 ~ 65041610 (+) True LOC110527002
XM_021608186.2 mRNA downstream 284351 65068088 ~ 65120931 (+) False LOC110527013
TU77508 other upstream 1498839 63274963 ~ 63275296 (+) True G70011
TU75188 other upstream 3040747 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 3458883 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 4832071 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 5449006 59324636 ~ 59325129 (+) True G65442
TU79281 other downstream 25852 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 1131998 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 1131998 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 1503942 66287679 ~ 66288469 (+) True G73515
TU81346 other downstream 1636758 66420495 ~ 66424081 (+) True LOC118965274

Expression Profile