RNA id: XM_021608259.2


Basic Information

Item Value
RNA id XM_021608259.2
length 3057
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110527092
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 65478933 ~ 65482225 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTCCACCCACGCGAGCCACCGCGAAGCATTTATATCCATGTGCAGAGGGAAAGCAGTTAGTGAAGCAGTCTGGCTCAGCGCTTCTCTAAGGAAGAACCTGCAACACACAAGGAACTTTCACCTACTTGTTGATTCCTCTCCACCGCTGGAATTGCACATTCGTTTTTCCTTCTAACGCTCTAAAAAAAAACAGTCGTGGCACCATTTTACAACCGTTGCCTCGTGCATTGAAGGATCCTGGTCGGTCCTCTATGAGAGCTACTGTAACGTTACTGCGACAGAACTTCCGAAAAAGAGATGTCTGCAACCATCTTGTCCGCTTTCTACGACATCGACATGCTTTACAAGCAAGATATGAACATGAACGCTGTGAATCACATCAATAGCATACTGGACAAGAAAGCGGTGGGGCCTCCAGTGACCACACACAGCTCCAATAGTTCTTTCGCGCCGGGATTTTTCCGTAGAAGCTCGACCACCAACATGGAAGCAATGACCAACAACAGCAACAAGTACTCTGTCAACTCCTACAGTAATTTGATGGAGAACGCAACGAGCAGCAGCACTGCCATTATGAACAAGGAGAACAAGTTCCGCGACCGGACATACAGCGAGAATGGGGACCGCAGCCAGCAGCTGCAGATCGTGCAGCAGAAGCCAGGCTCTCAGATCAACTCCACCCGCTACAAGACCGAACTCTGCAGGCCCTTCGAGGAGAACGGAGCGTGCAAATACGGAGAGAAATGCCAGTTCGCGCACGGCTACCATGAGCTGAGAAATTTGTCTCGTCACCCTAAGTATAAAACCGAGCCCTGTCGCACTTTCCACACTATTGGCTTCTGCCCCTACGGTCCCCGCTGTCATTTTATCCACAACGCGGATGAGCGCAGACCCGCTCCAAGCAACGCCAACGTGCAGGGGGAACCCAAATCGGCTCGCGAGCTCTGTGGCTATGGTCAAAACGGCGACGTGCCGCAGCAAGTTGGGTACAACCGGGACAGACCAAAGCTTCACCACAGCCTGAGTTTTTCAGGATTTTCCAGCCACCACGGACTTGAGTCGCCACTACTCGAGAGCCCTACGTCGCGCACACCACCACCCCCCTCaaactcctcttgctctctcaaCTATTATGAGGACGTACGGTCTCCCAACTCCATGTCTTGTGTGAACAGTGCATTCAGTTTTCCTGGACATGACCTGAAAGCCTTACTTGCTCCCCTGGCCTTGCATACGCAAAACGGCTATGGCAACAACCATTTCAATGGTGCCTACTACGGGAACATTCAAGCCAACATGtgccccccttctcccccctcatACAACATGAGCCACTTGCAGTCCCTGCGCCGCCTGAACGATTCACCGGTGTTCGACTCCCCTCCTAGCCCGCCCGACTCCCTCTCAGACCGGGAGAGCTATGCGAGCGGGTCCCTCAGCTCTTCTGGGAGTCTTAGCGGCTCTGAGTCTCCGAGTTTGGATGCTGGGAAACGTTTGCCAATCTTCAGCAGGCTGTCGATTTCTGATGACTAAACATCCCATGTTATTTTCAATGGATCAAATTTGTCCATGACATGGCATTAGTTGTTTTTCCTTTTTGTAATGAGGGTTGTATAGAATTAGATATCAACAGAAGGCATTCCATCGGTGACTTACACTTTTGCGCTGCAAGTAAGGGCAGTATTTGTCTCAGGCAAGCCACACTTCCCTGGGATAGATGTGTACAAAACTTGACACGAGACTGTAAAGCAGATTCAGATTTCCTCCATCCTGCCAAGAAATGCCTTGACACAATGTACATTTTTTTCTTCTAAGTATGTGTTCCTTTCTGAAAGCTTAAACTTCCATTCCAGAACTTTAATCTTTTTTTCACAGCGCCACGCAGTGGTTTGTTTGAGTAGTATAGTTTGTTGCTTAGTTGAAGCACTCTGAGTTAGGTTTGTTTGGGGAAATCACTGCAGAtggttgaaaatatattttatatatttttttagctgTTTTGAGTGATTACATAGCAGTGCGTAACTGGCTATGAAATATTTAACTTATTTATTACCTTGTGAAAAAGTGTAGGCTATATGTTGGTAATTTGTCCATACTGTATTTATCAAGTATGATGAAGCAATAGATCTATATTCTTTTATGTTTAAATTATGATCGCCATTATTAATCTGCATAAAGTGGAGTGTATGTCCTTTtcacagtaatatatatatattgtttttggtCTCCTTTTGTAACTTCACTTGGTTATTTTTATTGtaaattagtaaaaaaaaaaaaaaatcttaatttaaGAGAACGTATGTGATATTTATTTCCTAAATTTTGTTTACGTTTATTAAAACAAAAGTTTGCGTGATTTGCTGTTCTGAGGTTGCTTGTAAGAGCTGTGGAAGGTGTTTTGAGAATCCTTATCTAGATGTTTCTGTAGAATGTATAAACAATGTGGTTGTGCAGACCGTCCAAACCTGAGCTAGCcttgcatattttttttttctccatagaTCAGACTCGGTGACAAAGAACCCAAGTAAATAaattaaccaaaaaagtattttgtgttcTGTTTATACGAGGTCACACTGTGATTCCAGCCACGCGCTAAAGAATGTAGCAATCCTTTGTGCCCCAGTATTATTGTGTAGTGCCTACAGGGTTCACCATCTGACATGCCTTAATATTAACCAAATAAAGTATTTTTCCTACACATATCTTTTCCACAACTTTAATTGAATGTAGTGTTGGAGCTGAATTACTTTTGAAGGTTGTTACCACTTATCATAAGACCCTGGGACAACGATACTATATTATTCCCCGTTCCTCTACTTTTGATTTTGTTTGATATTGACTAGTTCAGGGGATGCGCACTATGTatttttttgactacttttatcAGAAGTAAAGCTTTTTGAATGTAACTAAAACGGACAAAAAGACAACCTGAGTTGTAATATAATTATTTTTGGAGAGTCAGTTCACTACAAATTGAGTGTGAGACTTTGTACTGTACATTTTCTTTTGTAGTTCTCCCAATAAAATGATTTTGAAAATA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K18753 ZFP36L; butyrate response factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79642 lncRNA upstream 34260 65406430 ~ 65444673 (+) True G72047
TU79592 lncRNA upstream 150421 65327593 ~ 65328512 (+) True G71997
TU79529 lncRNA upstream 222458 65194818 ~ 65256475 (+) True G71935
TU79540 lncRNA upstream 247530 65230164 ~ 65231403 (+) True G71945
TU79450 lncRNA upstream 363932 65068384 ~ 65115001 (+) True LOC110527013
TU80481 lncRNA downstream 80888 65563113 ~ 65563455 (+) True G72812
TU80537 lncRNA downstream 175100 65657325 ~ 65662302 (+) True G72866
TU80528 lncRNA downstream 204524 65686749 ~ 65735864 (+) True G72858
TU80629 lncRNA downstream 313192 65795417 ~ 65799491 (+) False LOC110527123
TU80631 lncRNA downstream 313192 65795417 ~ 65799491 (+) False LOC110527123
XM_036982928.1 mRNA upstream 2418 65372299 ~ 65476515 (+) True thada
XM_021608241.2 mRNA upstream 182829 65291708 ~ 65296104 (+) True LOC110527082
XM_021608225.2 mRNA upstream 257246 65184559 ~ 65221687 (+) True LOC110527046
XM_021608212.2 mRNA upstream 257248 65173289 ~ 65221685 (+) False LOC110527046
XM_021608213.2 mRNA upstream 257249 65173289 ~ 65221684 (+) False LOC110527046
XM_021608274.2 mRNA downstream 197799 65680024 ~ 65697328 (+) True LOC110527114
XR_005052545.1 mRNA downstream 312762 65794987 ~ 65799402 (+) False LOC110527123
XR_005052546.1 mRNA downstream 312775 65795000 ~ 65799402 (+) False LOC110527123
XM_021608290.2 mRNA downstream 344122 65826347 ~ 65828743 (+) True hcar1-3
XM_021608300.2 mRNA downstream 416202 65898427 ~ 65911535 (+) True LOC110527154
TU79281 other upstream 577309 64809589 ~ 64901624 (+) True LOC110526969
TU77508 other upstream 2203637 63274963 ~ 63275296 (+) True G70011
TU75188 other upstream 3745545 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 4163681 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 5536869 59941486 ~ 59942064 (+) True G66188
TU80728 other downstream 433510 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 433510 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 805454 66287679 ~ 66288469 (+) True G73515
TU81346 other downstream 938270 66420495 ~ 66424081 (+) True LOC118965274
TU81852 other downstream 1273982 66756207 ~ 66758984 (+) True G74067

Expression Profile