RNA id: XR_005052545.1


Basic Information

Item Value
RNA id XR_005052545.1
length 1725
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC110527123
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 65794987 ~ 65799491 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACTTGATACAGTACATTGCAGGCTGGCCAGAGAAGTATACTAAATACACCATTCTAATGTAATACTGGTAAATTACCTCAACTACAGTCACTCTCACCTTGTTCAAGTTCAAATGCAGTTAATTATCAAATACCATCCCCTTTAGTGAAGTTAAACAGCAAGTCTTATTACAGTCCAATAGATTTGTGTAGAAATTCCTTCATGCTGCCTCCTATATATAGATAATGAGAGGGAACAACTTCAGCTCAGTTGATGAAATACTGTGCGGGTCAGAAACACACTTCTTACATTTACAGCTAAAAACGAATAATATATTTGCACTTTATATTAGGCCTTAGCAAAGTCCTCCCACCAAATAGTGTCACAAAAACAGAATAATTAGAAAATTGCTAGGCCTACACATTGAGGTGTGCTACAAGATAACTGGTAACTCTGTAAACAGGAGTAGGTGCATCACTGGTCACTGAGCTGGCCAGCTaaagttagttagttagtcacATAAATGTACGTTCAGCCTGATGATTATTTATCTTACGAAGTCAGCATGGCTTAACATAGTTTATTTCGTTTTTGACCTCGACATTGTTGCTGGATAGATACTTTCATACGTAATATGCTggcgctgctagctagctaatgctaaCGGCGCTAGCTAACCTCATATCTGGATGCCCCACTCTAGTTCCCGAGAGAGCAGCATACTGGCCCTCCATTCCCAAACCTGAAGCCACCTGTCCCCAGCAGGAAAGACCAGGAAAAAGTGCTAGCTTAAGGTACAACTTCCATTTTGAGGAAATATAAGACAACTCAATGTCACATTTAGATTTAGAGTTACTGACATGAATAGAAGCATATACAAGCAatctatcaaatgtattttattaaacCCCATTTTACATCAGCAGTAGTCACAACGTGCttatacagatacccagcctaaaccccaaagagcaagcaatgcagaggtAGAAGCagtgtctaggaaaaactccccagaaaggcaggaacctaggaagaaaccaggctctgaggggttgccagtcctcttctggctgtgctggtggagattataaaagaGTCCAGCTATTTAGCCAGATTATTCTTCAAGATGtttaaacgttcatagatgaccagcagtgtCAAATAATAGAGGGTCGCTGGAACTTCCAGAGGCTTGTAAACCTGAAGCAGTGTGATGTGGTCCAGATCTGACACCCCTATTAGCTCAACCACAGTCTTCACAGCTGCAGTCGTCTGCCCCTGCATCTGCTACACCGGCCACGACAGGTGATACAGATCTGCCACCCCCAGCAGTTCAGCTGCAGTCACAGCAGTCCTCTGCTGTGGTATTTAATTTACCGGCTGCACCAGGTCCTACTACACTGGCCGTTAAGGAAGAAACTATTTTTTACGATACCCAGATGAATACAGATCTGCCATGTACTCCACCACTGCCTGACAGCCTCACCCAGACGTGCATACACACGGGGCCTAGCAAGACTGACAAAGCAGAGATGGGTGGCTGACAAGGAAAAATAAAACAACATGCACTCAAACACATTATACACAATGTAAATAAGTTGTAATTACCTGTTCATTTAATGTTTGGTCCATTTTATTTTAGGATTGGAGAGATCTACTCCTTCATATCCATTGTCAATATCTACATAATTACTCTAAATATCTATCAAATTAAAGTGTGATTGATAATTTTGTAAAAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80528 lncRNA upstream 59123 65686749 ~ 65735864 (+) True G72858
TU80537 lncRNA upstream 132685 65657325 ~ 65662302 (+) True G72866
TU80481 lncRNA upstream 231532 65563113 ~ 65563455 (+) True G72812
TU79642 lncRNA upstream 350314 65406430 ~ 65444673 (+) True G72047
TU79592 lncRNA upstream 466475 65327593 ~ 65328512 (+) True G71997
TU80643 lncRNA downstream 6557 65805959 ~ 65806285 (+) True G72954
TU80653 lncRNA downstream 31977 65831379 ~ 65831608 (+) True G72960
TU81050 lncRNA downstream 182267 65981669 ~ 65981892 (+) True G73321
TU81063 lncRNA downstream 206631 66006033 ~ 66006238 (+) True G73334
TU81040 lncRNA downstream 213475 66012877 ~ 66013340 (+) True G73311
XM_021608274.2 mRNA upstream 97659 65680024 ~ 65697328 (+) True LOC110527114
XM_021608259.2 mRNA upstream 312762 65478933 ~ 65482225 (+) True LOC110527092
XM_036982928.1 mRNA upstream 318472 65372299 ~ 65476515 (+) True thada
XM_021608241.2 mRNA upstream 498883 65291708 ~ 65296104 (+) True LOC110527082
XM_021608225.2 mRNA upstream 573300 65184559 ~ 65221687 (+) True LOC110527046
XM_021608290.2 mRNA downstream 26945 65826347 ~ 65828743 (+) True hcar1-3
XM_021608300.2 mRNA downstream 99025 65898427 ~ 65911535 (+) True LOC110527154
XM_021608309.2 mRNA downstream 116179 65915581 ~ 65922285 (+) False LOC110527164
XM_036989801.1 mRNA downstream 194466 65993868 ~ 65999848 (+) True LOC110532572
XM_021608317.2 mRNA downstream 200855 66000257 ~ 66003340 (+) True LOC110527177
TU79281 other upstream 893363 64809589 ~ 64901624 (+) True LOC110526969
TU77508 other upstream 2519691 63274963 ~ 63275296 (+) True G70011
TU75188 other upstream 4061599 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 4479735 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 5852923 59941486 ~ 59942064 (+) True G66188
TU80728 other downstream 116333 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 116333 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 488277 66287679 ~ 66288469 (+) True G73515
TU81346 other downstream 621093 66420495 ~ 66424081 (+) True LOC118965274
TU81852 other downstream 956805 66756207 ~ 66758984 (+) True G74067

Expression Profile