RNA id: XM_021608546.2


Basic Information

Item Value
RNA id XM_021608546.2
length 2083
RNA type mRNA
GC content 0.45
exon number 9
gene id yipf3
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 66774868 ~ 66783655 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACGACGTGCTACGCGTTGAGTCTGAGTGACGCAGCCCCATCTGATTAGGCAGTGTAATGCATTTTTGGGAACAAATATTTATCTTTTAAGCGCCCCTGATGCTGTAGTTGACAATTCATTTGGTTGTATGTGAGATTGAAAGTGCAGTTTTCTTTTTAAAAGGGATCAAGGACACGTTCACCTGCTCTAAAAGATGGCTTCGTCTGATGGAAACAAAAACACGAACACGGAACCATGGGGTGGTTTTGATGACAACATTAtccagGGCACTGGGTCAGCAGTGATTGACATGGAAAACATGGATGACACATCAGGCTCCAGCTTTGAGGACATGGGGGAGATGCACCAGcgcatgaaggaggaggaggaggtggcagAGGAGGCTGAAGCAACTGAAGAGGAGACTGGAGAGGATGGCGAGTTTCTGGGAATAAAGGGTATCAAGGGCCAGCTGGGGAGACAGGTGGCAGATGAGGTGTGGCAAGCAGGAAAGCGGCAGGCTTCCAAGGCTTTCAACCTATATGCCAACATAGACATTCTCCGGCCGTACTTTGATGTGGAGCCTATGCAAGTTAGGAACAGGTTGATTGAATCAATGATACCCATCCGTATGATCAATTTTCCACAGAAGATTGCTGGGGAGCTGTATGGGCCCATGATGCTGGTGTTCACGCTGGTGGCCATCCTCCTGCACGGAATGAAGACATCAGGAACAGTTATTAGAGAGGGTACTCTGATGGGAACAGCCATAGGGACATGCTTTGGTTACTGGCTGGGAGTTTCCTCCTTCATCTATTTCCTGGCGTACCTATGCAATGCCCAGATCACCATGCTCCAGATGCTGTCTCTGCTGGGTTATGGTCTTTTCGGGCACTGCGTGGTTCTCTTCGTCACCTACAACGTCCACTTCCACTCCCTGTTCTACATCCTGTGGCTGGTCGTAGGAGGGCTCTCCACACTGCGGATGgtggcTGCTGTTATCTCTCGGACTGTGGGCCAGACCCCACGCCTCATCCTCTGTGGAACACTGGCTGCTCTGCATATGCTCTTCCTGCTCTACCTGCACTTCGCTTATCACAAGATTGTTGAAGGTATCCTGGACACATTGGAAGGACCCAACATGCCCCCCATCCAgagagtggccagagatttgCCTGTGGTGGCCACTGCTGCTATGAATGCTGTGAATGCCACAGTGAAGACCCTTGGTGTTATCCTGCAGTCACAGTGATGTTGTGTCCAACATCAACGATGAGACCATAGGCTCATGAGAACCTGATTtccatggtggtggtgttgtgtagATAATACAGACTGATGTGAAGGTCAAAGACCATGGTGGTTACTGGTTATAGTTGACATTCATCATGATACATGAACATTGTCTCGGCAAACAAATCATCATCTGTTCACAACAACTATTGGTTGTTTATATTGAACCAAATCAAAAAACTAGTGAATGTCATGTTTGTTCTCTTCAAATGATTGACTCCCTTTTTCATAGGGATCTTGTATTTGTTAAAGCAGCTTGAGTGCATTAAGATTCCCAGCTGTTTGCATTTGTTCTCATGTTTAGACAAATTAATATTCAATTCAACTCGACACTCTCCTTTTTGTAGGCTTTGTTACACAGGTTATGGTGATTCTATAAAATTCTAGACGTTCAACGGGAGGACGGTTCCCTAAGGCTGTGTGGTGCCTTCTATAGTTTCTTCAaaggaattattattattattatcatgtatGATACGGGGTAAATTTAGAGTTTTATCTAGCTTGTTTTACACAATGCACCTCTCTTGTCTGATAACCTAATGGGAAAATAACCAGATATGCAGTTGATATGTCACGAGATACTGCATTAACTTATGAATATTGTTCCTTCTAATCAGCTTTTGTTTCACCCAGTCATTTGTGCTGTGCATTATTTGTACTTCCTAACATTTGGGTGGGATGCAAGGTAACCTCTCCTCCTTTTTATTTAAATGTGAAATTGTATTTATAGGGTTATTGTACAAAACGATACAATGGAAATAAACTTTACGGACCTAAGACATGGTCTTCTGAAAAAAAATCAAGAA

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K22941 YIPF3, KLIP1; protein YIPF3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81929 lncRNA upstream 3736 66770907 ~ 66771132 (+) True G74131
TU81925 lncRNA upstream 4480 66768928 ~ 66770388 (+) True G74128
TU81917 lncRNA upstream 21017 66753518 ~ 66753851 (+) True G74127
TU81916 lncRNA upstream 21681 66752891 ~ 66753187 (+) True G74126
TU81912 lncRNA upstream 37880 66736787 ~ 66736988 (+) True G74122
TU81939 lncRNA downstream 1429 66785084 ~ 66785570 (+) True G74140
TU81945 lncRNA downstream 8964 66792619 ~ 66792818 (+) True G74146
TU81980 lncRNA downstream 52849 66836504 ~ 66837614 (+) True G74174
TU81963 lncRNA downstream 67913 66851568 ~ 66852284 (+) True G74157
TU82002 lncRNA downstream 81757 66865412 ~ 66866511 (+) True G74195
XM_036983106.1 mRNA upstream 40216 66638925 ~ 66734652 (+) False LOC110527278
XM_021608459.2 mRNA upstream 40216 66638927 ~ 66734652 (+) False LOC110527278
XR_005052560.1 mRNA upstream 40216 66638927 ~ 66734652 (+) False LOC110527278
XM_021608422.2 mRNA upstream 206940 66550263 ~ 66567928 (+) False LOC110527255
XM_021608430.2 mRNA upstream 206940 66550263 ~ 66567928 (+) False LOC110527255
XM_021608559.2 mRNA downstream 9765 66793420 ~ 66802542 (+) True lrrc73
XM_036983187.1 mRNA downstream 101782 66885437 ~ 66954091 (+) False dlk2
XM_036983196.1 mRNA downstream 101782 66885437 ~ 66954091 (+) False dlk2
XM_036983202.1 mRNA downstream 101782 66885437 ~ 66954091 (+) False dlk2
XM_036983191.1 mRNA downstream 101953 66885608 ~ 66954091 (+) False dlk2
TU81852 other upstream 15884 66756207 ~ 66758984 (+) True G74067
TU81346 other upstream 350787 66420495 ~ 66424081 (+) True LOC118965274
TU81252 other upstream 486399 66287679 ~ 66288469 (+) True G73515
TU80728 other upstream 852583 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other upstream 852583 65915735 ~ 65922285 (+) True LOC110527164
TU81938 other downstream 680 66784335 ~ 66784969 (+) True G74139
TU83729 other downstream 1590850 68374505 ~ 68374929 (+) True G75747
TU86384 other downstream 3788010 70571665 ~ 70654961 (+) True G78121
TU87354 other downstream 4252815 71036470 ~ 71076102 (+) True ccdc85a
TU90667 other downstream 6767961 73551616 ~ 73571737 (+) False G82111

Expression Profile