RNA id: XM_036983168.1


Basic Information

Item Value
RNA id XM_036983168.1
length 2737
RNA type mRNA
GC content 0.59
exon number 11
gene id tjap1
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 66806836 ~ 66883731 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGATTCCTAGGATTACCCAGCGTACCCCGCGGGTAAAGATGGCGATAAATGAAGAGGGTAGGAGATCAACTTTGGCCGGGAACAACTATACCCGAATTTCGGTTTTATAGAGAATAAACCGTTAGTTATCGGTTGTGTAATTGCTTAATGGTTAGGCACTTATATCAGTGCCATTCTTGAGTCTAGTCTACGCAACGTGATCGAATAATTACAGCGCATGAGCTTCCTTCCTTGCGACCAAACTGCAGACAGCGTCCGTCCTAAGAAGAGCGGATAAAGTTTATTACGGATCTGACTCAGCCCTCTGacactgatttttttttattgtattatttGGGGTAACTATAACAGCAGACATTAAACAGGTTATCGGTAGCCCGGAGGTTCACATGCCAAGaaagcgaggaggaggaggggcaggaAGAGGAGCCAGAGGGGACACACCCAGGGCGATCAGTCTGGAACACGTAGCATATGCTCTTAAAGAATGCCTGTGACTTAAGAACCTGTGGATGAGGACGTCGCTGGAGTACCTCAGAATTTGGgagagagggagagtggagagagccagggagggagTAGGCATGGtcggaagggagggagagaaaGAATAACCGACCGGACAGACGCTGAGCACCAAGGATGACGAGCGCTACCCCGGCCAGGAAGCCGTACCGCAAGGCTCCGCCTCAGCACCGCGAGTCGCGCAACAACTTGCCCTCGTTCCTAGAGGACCTTAGTGGGAGCACGCCGCCTGCGCTTGCCAACACCGCTGGCCCCAACCCTCCTGACCCCTGCCAGGACTCCTTATCAGATGCAGACAGGATCAAgaTCCTGCAGCAGCAGAATGAAGAGCTTCGCCGGCGGCTCTCCCACACCACCCACAAGATGGAGGCCATGGAGACGGAGTTTGAGACCAGCCGCCACTACATGCAGGGGGAGATGGGTCGCACGCGCGACGACCTGGAGAAGATGAGAGACAAGTTCCGCAGACTGCAGAACAGCTACACCGCCTCCCAGAGGGCCAACCAGGACCTGGAGGAGAAGCTTCATTCCCTGCTCCGTAAGGTGGAGAGAGACAAGAAGACCACGGACCAGGAGATAGTGGAGCTCACCAACAAACTCCTGGACGCCAAGAACACCATCGACAAGCTGGAGGAGTTGAACGAGCGCTATCGGCAAGATTGCAATTTGGCCGTGCAGCTTTTGAAGTGCAATAAGTCCCATTTCAGGAACCACAAGTTTGCAGATcTGCCCTATGAGCTGCAGGACATGGTGAACAAGCACATGAAGGCCAGTCTGCCGGATAAGAGTTCCCAGGGGGCCCAGGGCCAGGACTCCGACACCATGAGCCTGACGCCTGCCGACGTGGTGCCCACCTCCGTTATCGCCCGTGTACTGGAGAAGCCTGAGCCTCTGGTGCTCAACTCTGCCCAGTCCAGCAGCAGCGCAGGCCGACCCCAGGCAGAGGACGTGTTTGTGCATGTGGACATGACGGGGCCCCAGGCCGAGGCAGGAAGAGGGGGTCGAGAGAATGGGGGTCCCCGCCACAGCAGCAGAGTCCCAGCCCAAAGCAACCAGGCACAAGAGCTCCTCCAGCAGAACGGAATGTGTCGGAGCCAGAGCAGCCTGTCAGCAGACGGCCAGCCaggagaggagggtggtgggGCCTTTGAGAAGCTCAACCCCTACCCAGCCCCCCCTCCGCCCCATCCCCTCTACCCCGGCCGCAAGGTGATCGAGTTCTCCTCGGACGACAAGGTGAAAATCCCCAAGAACAGCCCCCTGCCCAACTGCACCTACGCAACGCGCCAGGCCATCTCCCTCAGCCTGGTGCAAAATGACGAGGAGAACGAGCGCCAGCGCACTGTGCCCAACAGCCCCGCTGTGTCGGACGGGGGCTGGCGCTCTGGGGCTTCCTCCTCCTCAGGGGGAGGGGGGCAGCGTGACCCCTGCCGCACACCTACTCAGCTGGACACAGCAGACCCCATTTCCAGTCAGTCCAGCCCCTTCAGCAGCCCCCCTCAGCCCCCCAGCGCCTTCGCCAGCTCAGGCAGCTCTGAGGAGGACCTGCTGGCCAACTGGCagcgcatgtttgtggagaagaTGGCACCATCCTCTGAGGGCACCCTGGTCAACCGCACCTCCTTCAGCAGCGAGACAGTCAAGGACCTGGAGAGGACCCGGACCTGCAAGCCAGGGGGCGGGGGATCCCACACGGGGGCACTACGGGGAGCCTACTCGGACGGGGAGGAGGGGTCCTCCACTCGCAGCTGGACAGCTAGCCGAGAGTCCAGCCTGGACACTGACACCAGCAGCATGGCTGACCTCCGCAACAGGAGGGGACATTACGGAGCAGACTTCTCCACAGAGGAGAGCGAGCAGCTGCTGATGGCCCTGGACAACGACCAAGACGACGCCAGTGGCGACACCGTGTCAACGGCCATCACTGTGGAGACCAGCCTGGCGGAGGCCAAGAGGAATGAGTTTGTGGAGGAGACGGGGTCTGtaggcagctctgcagaggagagagacatccTGCCCCAGGACTTCCCTGTCATAGTACCCAGGGTCCTGGCAGGGCTAGAGGACTACACAGAgaacacccctcccctcccctccaactCCTCCACTTCCGGCCGACCTCTGAAGAGCCCAAAGAGGATGGGAGTCCACCACTTGCACCGCAAAGACAGCCTGACTCGGGCACAGGAGCATGGTAACCTGCTGGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82286 lncRNA downstream 24110 66787911 ~ 66788202 (-) True G74445
TU82226 lncRNA downstream 77665 66663962 ~ 66734647 (-) True G74386
TU82222 lncRNA downstream 90769 66647427 ~ 66721543 (-) True G74382
TU82254 lncRNA downstream 129994 66680072 ~ 66682318 (-) True G74414
TU81848 lncRNA downstream 173586 66638497 ~ 66638726 (-) True G74065
TU82391 lncRNA upstream 155537 67039268 ~ 67096685 (-) True si:dkeyp-121d4.3
TU82566 lncRNA upstream 341671 67225402 ~ 67225691 (-) True G74688
TU82570 lncRNA upstream 352385 67236116 ~ 67236327 (-) True G74692
TU82571 lncRNA upstream 353378 67237109 ~ 67237567 (-) True G74693
TU82577 lncRNA upstream 388003 67271734 ~ 67271956 (-) True G74699
XM_036983137.1 mRNA downstream 42938 66756214 ~ 66769374 (-) True ncoa4
XM_036983134.1 mRNA downstream 43074 66756214 ~ 66769238 (-) False ncoa4
XM_036983129.1 mRNA downstream 48165 66756214 ~ 66764147 (-) False ncoa4
XM_036983139.1 mRNA downstream 48486 66756214 ~ 66763826 (-) False ncoa4
XM_021608478.2 mRNA downstream 66061 66741091 ~ 66746251 (-) True LOC110527294
XM_021608693.2 mRNA upstream 73382 66957113 ~ 66958777 (-) True dnph1
XM_021608706.2 mRNA upstream 81933 66965664 ~ 67010646 (-) False LOC110527436
XM_021608714.2 mRNA upstream 81933 66965664 ~ 67010646 (-) False LOC110527436
XM_021608727.2 mRNA upstream 130734 67014465 ~ 67038832 (-) False znf318
XR_002474136.2 mRNA upstream 130734 67014465 ~ 67038832 (-) False znf318
TU78947 other downstream 2430956 64369902 ~ 64381356 (-) True LOC110526867
TU77510 other downstream 3534560 63277208 ~ 63277752 (-) True G70013
TU76624 other downstream 4394016 62411522 ~ 62418296 (-) True G69210
TU76326 other downstream 4829917 61981731 ~ 61982395 (-) True LOC110526417
TU76069 other downstream 5126004 61682278 ~ 61686308 (-) True G68736
TU82368 other upstream 110951 66994682 ~ 67010587 (-) True LOC110527436
TU83185 other upstream 502778 67386509 ~ 67388044 (-) True LOC110527584
TU83338 other upstream 785858 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other upstream 785858 67669589 ~ 67681730 (-) True LOC110527687
TU83574 other upstream 1274230 68157961 ~ 68162002 (-) True sdhaf4

Expression Profile