RNA id: XM_021608653.2


Basic Information

Item Value
RNA id XM_021608653.2
length 2578
RNA type mRNA
GC content 0.51
exon number 5
gene id dlk2
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 66885437 ~ 66954091 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCCGTTTGCACCATGCCTCTGAGAGACTCAGTCACCCTGCTGCTCTGGAGTTGCTGTGTACTAATGCTCATCCACCAATGCAAGGCTCAAGCTCTAAACTGTACGTGTAATGTGACCAATAGTCGGTGTGACGAGAATGCGGTGTGCAGGTGTGACCCGGGTTGGGAGGGGCAGCAGTGCAACGTCTGTGCGAGAATGCCAGGCTGTGTCCATGGATCATGTCATCAACCCTGGCAATGCACCTGCGAGCCTGGATGGGCAGGGCGCTTCTGCGACAAAGGTGACAGAAAATATTTATATCCATGTGTGTACAAATGAGGCACCTTGTCAGAACGGCGCCACTTGTTACGCCAACGTTTCCGGGGAATACTCCTGCCTCTGCCCCGAGGGATTTCACGGGAGGAACTGCGAGCACAAGACAGGACCCTGTCATAAGACCGGCAGGTCTTCGTGTAAGAATGGCGGGCAGTGTGAGGACAGTGGCGGTTATGCTCCAGAGCTCTCATGCCGCTGCCTGGCAGGCTTCACCGGGCCACGTTGCGAGAACAACATGGACGACTGCCTGATGCGCCCCTGTGGTAACGGTGCCACCTGCCTGGATGGCATCAACCGCTTCTCCTGCCTCTGTCCCGAGGGCTTCACGGGCCGGTTCTGTACCGTCAACCTGGATGACTGTGCCAGCCAACCTTGCCTTAATGGAGGGCGCTGTCTGGACCGTGCCAGCACCTTCCACTGCCTCTGCAAGCCTGGGTTCACTGGCAGGACCTGCGAGGTGCCCTTAAGGAGCCCAGCGAGCCAAGCGCCCATCAGCAGCTCCCATGACTGGGCTGGGGGAGGTGGGGGCTGGGGAAGGGTAACTCAGTCCAGGCCAGACCAGGACATCACGAGGAGGGAcaataatagtggagacaggctgctTAAGATCTCTGTGAAGGAGGTTGTGACCCAGTGGGGGTCGTCTGGCCTGTCAGAGGTGCAGCTCATCACCCTCCTGGTGCTGGGGGGCATGACACTTGCCGTGGTGGTGCTCACAGCTGGCCTGGTGCTGAGGGGACATTGGCAGGACCACTGTGCAAGCTGCAGGTGCGGCCCCACCCCCCACCTGCACCCGCTGAAACACCGAGACCGCCAGCCACCCCCGCAGAGCCACCTAGTCACAGTAGAGCAGGAGTGTAAGATCAGCTTCCTGCACACACCCACAGCCCCAGAACTGGAGAAGAAGAAACTGAACACTGAGGTGATTTAGGTTATGTTTACTACCTCCACAGCCCTGAACACAGGACACAGACTGCTCTCAGCAGAGGTAAAGCCATGATTTTATCCCAGCCCTGCCTCCATGACTGATTTTCTTCAGTACTGACAGTCAAAATACAGACAACATACCGACCTAGGTATCGAAATCTAAAGAGACGCAGGACCAAGAAGGGACCAGTGGGTCTGTTCAAGGGTAAATGTTAGGAGTGTCAAACACATTCTCTTAACAAAAGGAGCGTAGTCCTAATATTACGGATTATTTGTTGACCAGAGGGGTAAAGCGGAGGTACATCATGAGAAATATACTCAAGTCCTTTGGTTACTTGTCACGGACAACCAATGTGTAATTTGTCCGTCCACAAAATCAGCTGATTCGATTTCTTGGCATGAACTGCATGTAAGACAGGCCTACTGACAGACAGCTTTGGAATGCAAGCCGAGACAATGACCTTGTTATGTCAACCTAATTGGTGTACTGGTATTTGTCACTGCTGTTCTCGTCATGATATTAGGCCAAAATGTTAGACATGAATGAATCTACCCATATTTTTCCAAATGGGCTCTGACCTCGGAACAAGCTCTGCAGTGAGCCGAATTCAGACATGCAGACAAATGATTGCCTGAATTCATGTTGTTTTAACAGTGTACTTTTTATACCACAGACTCAAGATCTGCAACAACTCAACACCTACTTCAtttaagtaactgtccagtgtttccagatttctatgaaatatgacctataattaattacaatatgagtaaaatagttttccttccaaaaaaGTGTAATTATGTATGTAAAAAAatcagcttttctgtgttggaatggtgtgggcgtaccccatagagttagatagaggcACGGGCATTGCCATTTAGGGCTTTCAACATTTTAAGGTAGTCAACAGGGTTGTACTTTCTATGGGTTACGGAAGGATGAcatgattccatccaggtcatcaggagggatcagccaatgaattatacttaTACCTATACTAGGTGGCCGTATGTACCTTTTCAGTTTGTTTGTCAACTCAttgaagtagtagaagaagaatattgactacttcaaaataaAGATGGCCTTAATGGCGCTGCCTGTACGCTCACAGATGCCATCAtgggatatacactgagtgtacaaaacattaggaacaggtCTACCGGGTGGTGCACTGGTCTAGGGCACTGccttgcagtgctagctgtgccaccagagtctctgggttcgcgcccaggctctgtcgcagccggccgcggcagggaggtccgtggggcgacgcacaattggcctagcgtcgtccgggttagggagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82002 lncRNA upstream 75848 66865412 ~ 66866511 (+) True G74195
TU81963 lncRNA upstream 90075 66851568 ~ 66852284 (+) True G74157
TU81980 lncRNA upstream 104745 66836504 ~ 66837614 (+) True G74174
TU81945 lncRNA upstream 149541 66792619 ~ 66792818 (+) True G74146
TU81939 lncRNA upstream 156789 66785084 ~ 66785570 (+) True G74140
TU82019 lncRNA downstream 3029 66957120 ~ 66958578 (+) True G74208
TU82093 lncRNA downstream 106379 67060470 ~ 67062188 (+) True G74266
TU82081 lncRNA downstream 123552 67077643 ~ 67087690 (+) True G74259
TU82084 lncRNA downstream 135814 67089905 ~ 67090352 (+) True G74262
TU82112 lncRNA downstream 152268 67106359 ~ 67106890 (+) True G74285
XM_021608559.2 mRNA upstream 139817 66793420 ~ 66802542 (+) True lrrc73
XM_021608546.2 mRNA upstream 158704 66774868 ~ 66783655 (+) True yipf3
XM_036983106.1 mRNA upstream 207707 66638925 ~ 66734652 (+) False LOC110527278
XM_021608674.2 mRNA downstream 4747 66958838 ~ 66962136 (+) False mea1
XM_021608682.2 mRNA downstream 4769 66958860 ~ 66962136 (+) True mea1
XM_021608814.2 mRNA downstream 189361 67143452 ~ 67194726 (+) True LOC110527498
XM_021564847.2 mRNA downstream 269217 67223308 ~ 67227387 (+) False cytf
NM_001165189.2 mRNA downstream 269236 67223327 ~ 67226028 (+) False cytf
TU81938 other upstream 157390 66784335 ~ 66784969 (+) True G74139
TU81852 other upstream 183375 66756207 ~ 66758984 (+) True G74067
TU81346 other upstream 518278 66420495 ~ 66424081 (+) True LOC118965274
TU81252 other upstream 653890 66287679 ~ 66288469 (+) True G73515
TU80729 other upstream 1020074 65915735 ~ 65922285 (+) True LOC110527164
TU83729 other downstream 1420414 68374505 ~ 68374929 (+) True G75747
TU86384 other downstream 3617574 70571665 ~ 70654961 (+) True G78121
TU87354 other downstream 4082379 71036470 ~ 71076102 (+) True ccdc85a
TU90667 other downstream 6597525 73551616 ~ 73571737 (+) False G82111
TU90669 other downstream 6616975 73571066 ~ 73571737 (+) True G82111

Expression Profile