RNA id: XM_021608706.2


Basic Information

Item Value
RNA id XM_021608706.2
length 3935
RNA type mRNA
GC content 0.45
exon number 17
gene id LOC110527436
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 66965664 ~ 67010646 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTGACTGGCCAATGGTCTTTTTCTTGGCCTAGAAGGGCGCAGGGAGCTGAAGGTAACCGAGTGGCAGCGATCGAGTCCCGGCGAAGTCTGTCGCGGAGTCACCGTGAAAAACACCAACAGCCACAAAATGCCGAATAAATCTAAAAAGGAAAAGGAGCCAACCAAATCTGCCAAAAGTAGCACTAAAAACAGTAATGCCACTAGTGGGAAAGACACAGGAACTGAAAATGCAGATGAGGCGCAGCAGCAGCAAACTGCCAGCAAGCGTCCCAGCAACAGCACCCCACCACCCACTCAGCTCAACAAGATCAAATACTCTGGCGGTCCCCAGATCGTCAAGAAGGAGCGTCGCCAGAGTTCGTCACGATTCAACCTCGCCAAGAACAGAGAGCTGCAGAAGCTTCCTGCCCTCAAAGATGCGCCCCTTATTGACCGGGAGGAGCTGTTTGTGCAGAAGCTGCGGCAGTGCTGTGTGCTCTTTGACTTTGTCACGGACCCTCTGAGCGACCTGAAGTACAAGGAGGTGAAGCGTGCTGGCCTGAATGAGATGGTGGAGTACATCACGCACAACCGCGATGTGGTCACCGAGTCCATCTACCCAGAGGGTGTGATCATGTTTTCAATCAACTTGTTCAGGACCCTACCACCATCCTCCAACCCCACAGGGGCTGAGTTTGACCCAGAGGAGGACGAGCCCACACTGGAGGCTGCCTGGCCACACCTACAGCTGGTGTATGAATTCTTCTTACGATTCCTGGAGTCCCCTGATTTCCAGCCTAATGTCGCTAAAAAATACATTGACCAAAAGTTTGTACTGTCTCTCCTGGAGCTGTTTGACAGTGAAGACCCCAGGGAGCGGGACTTCCTGAAGACCATCCTCCACAGGATCTACGGCAAGTTCCTGGGCCTCCGGGCCTACATCCGCAGACAGATCAACAACATATTCTACAGGTTTATATATGAAACGGAGCATCACAATGGAATCGCAGAGCTCTTAGAAATCTTAGGAAGCATAATCAACGGCTTTGCCCTGCCATTGAAAGAGGAGCACAAAATGTTCCTGATCCGAGGGCTGCTGCCGCTTCACAAAGTGAAGTCACTCAGCGTCTACCACCCCCAGCTGGCATATTGCGTTGTGCAGTTCTTGGAAAAGGACAGCAGTCTAACTGAACCGGTGATCATGGGCCTGTTGAAGTTCTGGCCTAAGACCCACAGCCCCAAAGAGGTGATGTTCCTCAACGAGCTGGAGGAGATCCTGGACGTCATCGAGCCCTCTGAGTTCGTCAAGATCATGGAGCCGCTGTTCAGACAGCTGGCCAAGTGTGTGTCCAGTCCACACTTCCAGGTGGCAGAGAGGGCGCTGTACTACTGGAACAACGAGTACATTATGAGCCTGATCAGCGACAACGCAGCCAAGATCCTCCCCATCATGTTCCCTGCTCTCTACAAGAACTCCAAGAGCCACTGGAACAAGACAATCCATGGGCTGATCTACAACGCCCTGAAGCTCTTCATGGAGATGAACCAGAAGCTGTTTGATGACTGCACCCAGCAGTACAAGGCTGAGAAACAGAAAGAGAAGTGCAAGCTGAAGGAGCGTGAGGAGGTCTGGCACAAGATAGAGGAGCTGGCCAAGCATAACCCACAGGTTGCCAACCTCCGACCTGGTCTCCACCCACAAGAAGAGTACATGATGTACAATGAGAGTCCGGGAGGGATGCCCTTGTACTCCATGGAGACGGAGACGCCAACTGCTGAGGACATTCAGCTGCTGAAGAAGACTGTCGAGACAGAGGCCACACAGGTACAACTACCAGCACACTCACAGGGGATGAAGGACATCAAGAAAGACAAGGTGATGATCCGGAGGAAGTCGGAGCTGCCGCAGGACGTGTACACTATAAAAGCCCTGGAGCAGCACAAGAGAGCGGAGGAGTACCTGACGGCCAACGAGGAGGCCCTCTGACCAGGGAGCAGTGGCACCCCCTGCACCTAACCCCCCCCCGTGTCGCATCCAACCAGTCACCTGCTttaccccccccccttctcctccgcttctcctccccctccactccttcatCTCTGCCGGAGATCCCCATCTGCAGAAAACCAGGGCCATCACAGAGACGGACAAGAACACACATATGCGCACATATAGGAACATACAGGCCTACAATAGTTCCAGCTTGCACAGAAATGCATACATACTTGACTACAGTGGGCCGTTCATTACGTTGCACAAGGACAACAATAACACAACAGTAGTATTAAGTGTAAGCATCCGTGAAGCATGTTTCTTTGTTTCCTTTTTGGAACCCAGCATTACCTATAGAGGGCAGTAGATTGTGATTGATTCTCTTGCTAGCTTGCCTGGAGTGAGAGGGTGTAGGTAATCTGAATGGTTTGGTGGATGATGAGGCCATGCTTTAGTCTAGCTGGAAGTCTAGTGAAAGTAGTGGTTCTGCTCTGTAAAAACCCCTAGATGTCAGGTCATGCCCAGGCAACATAGTAAATGTTGAGGAAGCGAAGTCTGTGACACAAAGCTTACAATACAATTTAGTAGTGCTGAGCTATTAACCAAAATGTTTTTTAAGCAACTAATTGACCGATGTCGGTTccattatttgaattccatttcttTCTATTTTTTTCTGTAAGCTCAGTGTGTAGTTTTTCTAGAGAAATCAGATCAAGCCCAGACTGTACGATATGGTAGGGAGTTGTAGTTGCCAACTGGCCagtattctacatagtttagcatGGAAAATGTGGTAATTACctacaatgaccataattcactgaaaatacatgatctaagtaattgatagttggtattcagcagtcataaaagtatgccttatttactttgaagaactattAAAATATtaattttgtcagacagcatagctCTCTCTATAGGGATGAGATTATGACttagaatgaaataataaagtaatcaaataaaacaaatgtaatatacacaactgaaataatttattaaagtaatgtgaataaattatggttaataagtgataagcagcaCTTGGCAGTCATtgccatcatgggacttttattaatgatttttattctgtgttacagcattcaacaaaCTAGTTCTGAGGATTAGTGATTTTTGAGGTCGGTTCGAATATTAAAAAGTAATCACGGTTTTCAATTTCGGTTTCgattatttatttaaatattaAATTCATTATGAAATAATTACATTGCAATGATTTTAGAGCTTTTTGATGTAAATTCCAAACATTAAATtgccaaaacattgaaaatattcCAGTGTCTCGACATCAATAAAAAATAGGACATTTCtattaaataataaaatatttcagtttttattggattactttattatttttcattccttagagtcatcatctcatctctgctcaggcagtagcagtcagccagccaagcCATCTAGTGTTATCTATGTGCTCCccatactgtactctcttcaatCATCTTATTTAGCTAGCCTGCCTAAAGTATGCTTCAGAGCTGAAtggcaaaatatttttttttactagttcttcaaagtagataaaGCATACTTTTACgaactgtctctgtccctctcattgTTTTGTtctgtacattcctctctcttaAAAGTGTATCTGTAAAAGTGTATCcgtccagagatctgtatataatgacgagatgttCATGTCGCCACCCTAACAATGTcattgtcccaaaggcgggaaaGCAGACGACAAGCGTTTGTTCAAAATATTGGGCAGATTTTGGCGACAGTGAAACCTTTCATtccgcctcttcctctctgatccgtCTCTGTCCGAGCTGAGATAAACAGGTGCAATGGATTGTGgttattgtagttaattaccacgtttctGCAATGAACTAGGTTGAACATTTGCTTAaggaaaactacaactcccttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82289 lncRNA downstream 81977 66843366 ~ 66883687 (-) True tjap1
TU82286 lncRNA downstream 177462 66787911 ~ 66788202 (-) True G74445
TU82226 lncRNA downstream 231017 66663962 ~ 66734647 (-) True G74386
TU82222 lncRNA downstream 244121 66647427 ~ 66721543 (-) True G74382
TU82391 lncRNA upstream 28622 67039268 ~ 67096685 (-) True si:dkeyp-121d4.3
TU82566 lncRNA upstream 214756 67225402 ~ 67225691 (-) True G74688
TU82570 lncRNA upstream 225470 67236116 ~ 67236327 (-) True G74692
TU82571 lncRNA upstream 226463 67237109 ~ 67237567 (-) True G74693
TU82577 lncRNA upstream 261088 67271734 ~ 67271956 (-) True G74699
XM_021608693.2 mRNA downstream 6887 66957113 ~ 66958777 (-) True dnph1
XM_036983168.1 mRNA downstream 81933 66812312 ~ 66883731 (-) False tjap1
XM_036983173.1 mRNA downstream 81933 66812312 ~ 66883731 (-) False tjap1
XM_036983185.1 mRNA downstream 81934 66806836 ~ 66883730 (-) False tjap1
XM_021608727.2 mRNA upstream 3819 67014465 ~ 67038832 (-) False znf318
XR_002474136.2 mRNA upstream 3819 67014465 ~ 67038832 (-) False znf318
XR_002474137.2 mRNA upstream 3819 67014465 ~ 67038832 (-) True znf318
XM_036983260.1 mRNA upstream 30550 67041196 ~ 67058967 (-) False si:dkeyp-121d4.3
XM_036983256.1 mRNA upstream 33367 67044013 ~ 67058939 (-) False si:dkeyp-121d4.3
TU82292 other downstream 142848 66818844 ~ 66822816 (-) False tjap1
TU78947 other downstream 2584308 64369902 ~ 64381356 (-) True LOC110526867
TU77510 other downstream 3687912 63277208 ~ 63277752 (-) True G70013
TU76624 other downstream 4547368 62411522 ~ 62418296 (-) True G69210
TU76326 other downstream 4983269 61981731 ~ 61982395 (-) True LOC110526417
TU83185 other upstream 375863 67386509 ~ 67388044 (-) True LOC110527584
TU83338 other upstream 658943 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other upstream 658943 67669589 ~ 67681730 (-) True LOC110527687
TU83574 other upstream 1147315 68157961 ~ 68162002 (-) True sdhaf4
TU83653 other upstream 1199534 68210180 ~ 68211706 (-) True G75682

Expression Profile