RNA id: XR_002474137.2


Basic Information

Item Value
RNA id XR_002474137.2
length 6450
RNA type mRNA
GC content 0.52
exon number 12
gene id znf318
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67014465 ~ 67038832 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGGTTTTTCGGTTTTATCAGGCCGGAAATCGTAACACAGTGAGCGCTGTGTTCGTCAAACAAACTGAAATAGCTACATGGTAGTTAGAATGTCATTATCACTAGCTGCAGACATACAGTAAGTAATATAAAACGGCAATGTGTATAAAATCTATTCGGTAGTAAGTGGCTGTAATTGATAGGAAAAGTAAAATTTAACAGTAAAATATGTATCGTGGACGGCCTCCACCTCGAGGGTATCCGCCGCCGTACGAGGGCCGTGGTCCACCGCCCCGTGGTCTTACGCCTGGCCGGCCGTATCCTCGGCCTCCATTTAGAGAAGAACGGGGCAGGCCCAGACCGCCGTTTGATGGTTACCATGACGGGCCAcctccagaccagtacagacGTTCTCCACCGCGCAGGAGGTATACTTCAGCTGGTTCAGGAAGTCGCAGAGGACCAAGTGGTGAATACTGGGGCAGCGGCCCTCCCCAAAGAGAAAGATCTCCATCTCCCCGTGGTGGCATCCCCCCTGACCACAGTCTGGTCATCACTGTGGGCAATGAGTTGACTGGACCACCTGGGGTAGGGCTACCCTCAAGAGACTACTCTCCTTACCTGTCAAAGAGGTCCAGTTATGACGGGCCTGATGACCGTGGCCCCAGGAGGCAGAGTCCCAGCAGGGGGAGAAGCCGTCCTCGTAGCCGCAGCCCGGGATTCGGGGGACGGAGCAAGAGCCGTCCTCGTAGCCGCAGCCCGGGATTCGGGGGACGGAGCAAGAGCCGTCCTCGTAGCCGCAGCCCGGGAATCGGGGGGCGGAGCAAGAGCCGTCCTCGTAGCCGCAGCCCGGGAATCGGGGGACGGAGCAAGAGCCGTCCTCGTAGCCGCAGCCCGGGAATCGGGGGACGGAGTAAAAGCTGTGTCCGAAGTCGCAGCCCTGCAATGGGGGTACGGCGCAAAAGCCGCGCTCGAAGCCCCAGTCCTGAAATTGGGGGACGGAGCAAAAGCCGCGTCAGAAGTCGCAGCCCTGAAATGAAGGGACGGAGCAAAAGCCGGGCCCGAAGCCGCAGTCCTGAAATGGGGGGACGAAGCAAAAGCCGGGCCCGAAGCAAAAGCCCTGAAATGGGGGGACGGAGCAAGAGTCGTGGAAGGAGCAAGAGCCGTCCGCCAAGCAGGTCCCGAAGCAGGAGTGGGAGTCATGGCCAGAGCTATGGACGGGCCCGCAGTATGAGCAGAGCAAAGACTGCTGGTCCACGCAGGAGCCGCAGTGTCAGTACTAGCAGCAGTAGCAGGAGCAGCAGGGGAGGTGATAATAACTTAAAGAAGACAAGTGGGTTCAAGGAGCTGGAGTTGGCCCGTCGCCGCAAAGAGATGGAAGACATGCTGAATATTCCCACAAAGTCCATCCTGAAGAGGCGCATGGACTCTGAGACTGACTCCCCGTCATATGTGCAGAACAGTGATTCTCCAAGAGTTGACCCTGCTGGTGAGGCTGAGGCAGAGCGTCTTCTCTCAGCTATGAAAGGCATGGACCCTATCATGTTGGCCACCATGCTGGGGGAGCTGAGGGATGACCCACACATGGCCCAGAGTAGGCTGGACCACAGTGGGATTGCAGGGATCCTTGACCTGTTGGGAGGTGCACCTGCACCGCAGGAGGAGAAAAGGAAGAGGGTACCAGACATTGACGATGAGGAGAAGTTCCTTTATGGCGATGAAGATGATGTAGAGCGGGGCAGGGCTCCAGCAGAAGCTCCCCGTCAGCACAGTCTGTCAGAGCTATATGGTGATATTATGAGTGACCCGGCACGCTATGGCACCTCACCGCACCTAGAGGGCCATCCTGGTATTGTAGATCCGAGAAGCTCTCGTCAGCAACAAATGGACATGAGGTATCGGCATCAAAGCAGGTCCTCTGCCATCCCTGACCATAATATCAAGGTTGAAGAGCCTAATGACTACCCACCAGGAACAGGGCCACTGGAAGGGAAGGAGAAGCAAGACGTGGAGGAGTACGAGAAGATCCAGGACCTCCTCAAAACCATCGGGCTGGACCTGGGGGTGACAGAGATCAGCAAGATGGCTGCCAGGACTCAGGAGCGTCTGCATGGAAAGAAGCCCCCTCCGAAAACTCCCTCCCGTCGACCTGGCAAGAGGCGGGATCGCCGTGACTCTTCAGGAAGCTCAGACAGGAGCAGGGGCAGGCGTAGGAGCTGCAGTGGGAGCAGCTCTAGCAGTCGTAGCGACAGCCACAGCCCGAGCCGTAGTAGCAGCCGTGATAACAGCAGGAACCGGAAGAAGTCACCCCCATCTGACAGGCACAGCAACCATGGGAAGACTCGAGGTGGCAGAGAGGTGAGGACTGAGGACAGTAGCTGGGTGCAGAAGGCTTCACAAGCCCCTGAAACTACTCCAgtgccacccacccacccatctctctccatgCCTGCCTATGCCCAAGCCCAGGCGCATGGTCTGGTACCACCCAACTATCCACCACCTGGCTATGGGCAATATGGGAACTGGCCTTACATGCCCCAACAGTGGCCCATGTACCCACCTCCATCTATGGGCATGCCACCTCAATCTCCCATTGAAGATTTTCCGAATGCTCCGCCTTTTGACAGACCATACCTTAAAGTTATCCAGCCAGAGTTGCACCAGGGGGGTGATAGAAAGGCATCATCCAATATGGCCCCTCAAGATAATGGCAAGGACAGGAGGGTTTTAGAGGAGCGAAATAATGAAAGCCAAAAACAAAAGGTTCTTGAAGAACGGGAAAAACTGAGACGAGACAGAGAGATCCGCATGAAAAAGAAAGATTATCTCATGAAGGAACTAGAGAGATTGAGGAAACAGCAAGGGGAGCTTCTGCGCAAAAAGCGGCGTGAAAAGGATGGCCATAAGGACCCGTTACTGTCTGAGATCAGTCGGCTGCAGGAAGAGGTCATGACTCAGATTGCTGAGCTCCGCAAAGAGCACGAGGTAGCAGAGAAGAAACGATCCGAGCTTGACAAGGTGGCTCTCATTCTCGGTCTACAACCAAATGACAAGCCCCGGCGAGAGGGTAGGGGTTCTGCGGACCTTGAGCAGCCAACACACCCACCACCtccagagaaagagaagaaaaaggaGCGCGCTCACATCCGAGAGAGATCACCTGTGGCCCATGCCTCTGCTAAGGCAGCATCGTCGTCCTCAAGAGCCTCTCCTGAAAAAACGAAGAAGAAAGCCCCTGCCAGTACCCAGCCTCCTGAGACTCCAGCAGACCTGTTTGAACACTATGACGCTGGGAACCACTGGTGCAAAAGCTGCAATGTCACCTGTGGTTCCATGTTCGATTTTTTCACGCACTTGCACAGCAAATCGCACCGGAAGACTCAGGATCCTTACAATCGACCGTGGGCGTCAAGTTCCTCCAACAATGAGAAGAATAAGATTCACTCTTCAGGAGAGAAAATGACTAAACCTGCTAAAGGATCTGAGTTTTTGGTGCCAGTGAGGGGATATTATTGCCAGCTTTGCGAGGAGTTTTGCGGGGATGCAATTTGCGCTGAAGATCATGCCACGAGTCAACCTCACAATGAGAAATACAAGAAACGAATGTATGAGTATCCGCTCTACGAACAGAGAAGGAACCTGGATCGTCAAGCTGGACTCACGTTGGAAGTTAGTGACAAAAAGCACTCTGAGCTTAAACGTAAACACGAAGAGGAAGAGTCCAAAAAGAGCaaagagaaggaggaagggaaACCTAAACGCAGCAAAAAGGAGGAGGACAAGTCCAAACACAAAAGGGAGGATGATGTGGAGAGGGTCAAGTACAGCAAAAATGAGGAAGAAGAGAGGTATTTGTACcgcaagagagaggaggaggagcggtACAAACAtggtaaggagggaggagagaggcccAAGTACAGTAAGAAGGAGGACGACGAGAGATACAAGCATGGCAATGAGGAGGAGCGGTTCAAAAATCgcagggaagaggaggagtggttCAAAAATCGCAGGGAAGAGGAAGAGCGGCTCAAAAACCGTAGAGAGGATGAAGACAGGCCTAGGTTtagcagggtagaggagagaccCAAGTTTAATTGGAGGGATAatgagcaggaggaagaggaagaccgGTCCAGATATGGGAAGTGGAAAGAGCCCAATCCCAAATGTAgcaagaaagaggaggagaggtatagatcagagagggaggaagggaaaccTAAGAATGAAAAGGAGGAAAGACAATCAAGAAAAGAGAAGGGTGGGTGTCAAAGGGAGGAGACTTCAGGATCTAGAAAGCAGTGTGAGCCTGAGAAACCCAGTGACCCTCCCAAAGTGTTCTGTGGTCCCAATCCAGCATTGAGAGCAAAGCTGCGCAAGAAAAGTGAGGAAACTGCCAAAGTGGAGCCGAAGCCTCCATCTGCCTTCGGTAAGTTCAGCTGGAAAAAGAAACTAGAAAATGAGCTTGCGAAGGAAGCTGAGAGAGTGGCTGTTGAGTTCCTGAAGGAAGATGAGGAGGTTGAAGAGGATGACGACCCAGATGCATTTTCAAAGTCTTTGGCCGCAGCCAAGAGCATTGCTATCAAACTGTCAGGGAAGACGGTCATCTCCCCAACTAGCGCATGGGTACCCTTCAACTCTGGGAAAATACGCCCAAACCTTCCTGCTCCTTCCACGGTCCTGAGAAAACCCTCTGGACTTGGGCCCTGGGTATATGCTAAACCGGCCCCTCTCAACACCTTTCTCTCTATCAGACCACCCGGTGACAGTGACGTGACCCCTCTGCCTGTCATACAGAACCAGCCTAAAAATGACCCAGTACTGGCAGCAGACATAATTTCCAAAGCTTTCTGTGGTGAGGAAGTGGATTTGAAGAAGTCAGCAGAGGGCACTGGGAAGCCAGGTCCCACTTCACCAGATGAAAAGAAAGCTTCCACAGCAGAGTCTTTTAGTCAAGCCTCCACATCTACTCCTTCAGCAGTGATGCCCGAGTTCAAGACTCCCCTGCCTCCCCTGACCATGATGACCATGAAGTTTGATGTATCTGCACCAGGAGTCCCTGAGAGTGAGCAGAATGTCCCTGTGATGGTCACACCCCCTCCTTTCATGCAGAGACCCCCAAGTGAGGTGATGAACAAATCAGAAAAACCAAAGTCTAATCTAGCTGCCGCAAAAGCCCAAGATTTATTTGACATATTCTATAGCAGCATTACCACAGCCAGTACCACATCCATCACCAGCACAGCCACGAAAGTAGTTGTAGACTCCAAAGGTGAAACAAATGACTCAAAGAACAGCGAAGCCTTGGCGACTACTGCCTCACAAATGGAGCAAACCCAACCCGAGCTAGCAGCTCTTGATAACAGTAACGCCCATGAAACTGAAACTCAGGAGTCAGAGACTGACAGTGGGTTTGACCCGCAGGCCACTAAAGCAGTTGTAGAGTCCAAAGCTGCACTGAATAACTCAAATAACAGCGAAGCCTTGGAGGGTACGGCCCCACAAACAGAGCAAGCCCAACCCGAGCTCCCAGATCTTGACAACCGTAACGCTGTTGAAACCAACACTCAGGAGTCAATGGAGACTGAGAGTGGGTTTGACCCGCAGGCCACTAAGGCAGTTGTAGAGTCCAAAGCTGCCCTGAATGACTCGAATAACAGCGAAGCCTTGGAAGCTACGGCCCCACAAACAGAGCAAACCCAACCAGAGTTCACAGCTCTTGACAACAGTAACACCATTGAAACCAACACTCAGGAGTCAATGGAGACTGAGTGTGGGTCTGACCCGCAGCCCAAGGAAGAGACTCCCGAGGATGCCCCCGTACAACTGGATAACCCATCAGATTCTCTGGGTATCTCAACAGAGACCCTGGATCTCCCAACAGAAGTGCTGGGCTTAGACCTCTTTGATTTTAATCTTGAGtaacagactccactagacagcAGGCCGTTGGGAATTTGTGTTTTTAGGTAGTTGATGGGATTAGACGGGAACAAGTAGTAACCCACACAAATACTGCTGATTCGGAAACTAAGCCCTGTTAACTTGATGGTCCTAGCAGGCAGCTCGAATTTGAATGGAGTGAAACTTCCACTAAAAGACTTGACTTTCATATTAAGTGATGAATCTTCAGAACTTTAGAAGCTTGTTCTGCAAGCCTTTTGTCTTGAGAATTTTACTTCTTCGTTCAGCAAAACCTTTCTTTACTTCTTAAAAGGAACAAGAACTCACGTTTAAGAAGAAAACAGAATTTGCACCCTCCAGAAAAGAagatgtggatatagatactcaTGAACATAACCTTGGAATTGTTgatctttttaaaaaaaaaactcatttGTTCACTGACTTTACTATGCTCAAAATGTTATTCTGTGTTAGTGAAAATTAATACAAAAAAAATGGTTGTCCTTTATCTGTTGTTGCTAAAGTAGAGTTCAAATAAATTTCAGTGACCACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82289 lncRNA downstream 130778 66843366 ~ 66883687 (-) True tjap1
TU82286 lncRNA downstream 226263 66787911 ~ 66788202 (-) True G74445
TU82226 lncRNA downstream 279818 66663962 ~ 66734647 (-) True G74386
TU82222 lncRNA downstream 292922 66647427 ~ 66721543 (-) True G74382
TU82391 lncRNA upstream 436 67039268 ~ 67096685 (-) True si:dkeyp-121d4.3
TU82566 lncRNA upstream 186570 67225402 ~ 67225691 (-) True G74688
TU82570 lncRNA upstream 197284 67236116 ~ 67236327 (-) True G74692
TU82571 lncRNA upstream 198277 67237109 ~ 67237567 (-) True G74693
TU82577 lncRNA upstream 232902 67271734 ~ 67271956 (-) True G74699
XM_021608706.2 mRNA downstream 3819 66965664 ~ 67010646 (-) False LOC110527436
XM_021608714.2 mRNA downstream 3819 66965664 ~ 67010646 (-) False LOC110527436
XM_021608693.2 mRNA downstream 55688 66957113 ~ 66958777 (-) True dnph1
XM_036983168.1 mRNA downstream 130734 66812312 ~ 66883731 (-) False tjap1
XM_036983260.1 mRNA upstream 2364 67041196 ~ 67058967 (-) False si:dkeyp-121d4.3
XM_036983256.1 mRNA upstream 5181 67044013 ~ 67058939 (-) False si:dkeyp-121d4.3
XM_021608744.2 mRNA upstream 5181 67044013 ~ 67058941 (-) False si:dkeyp-121d4.3
XM_036983252.1 mRNA upstream 5181 67044013 ~ 67058942 (-) False si:dkeyp-121d4.3
XM_021608783.2 mRNA upstream 29864 67068696 ~ 67135787 (-) False LOC110527477
TU82368 other downstream 3878 66994682 ~ 67010587 (-) True LOC110527436
TU82292 other downstream 191649 66818844 ~ 66822816 (-) False tjap1
TU78947 other downstream 2633109 64369902 ~ 64381356 (-) True LOC110526867
TU77510 other downstream 3736713 63277208 ~ 63277752 (-) True G70013
TU76624 other downstream 4596169 62411522 ~ 62418296 (-) True G69210
TU83185 other upstream 347677 67386509 ~ 67388044 (-) True LOC110527584
TU83338 other upstream 630757 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other upstream 630757 67669589 ~ 67681730 (-) True LOC110527687
TU83574 other upstream 1119129 68157961 ~ 68162002 (-) True sdhaf4
TU83653 other upstream 1171348 68210180 ~ 68211706 (-) True G75682

Expression Profile