RNA id: XM_021608783.2


Basic Information

Item Value
RNA id XM_021608783.2
length 9769
RNA type mRNA
GC content 0.52
exon number 40
gene id LOC110527477
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67068696 ~ 67135789 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTAACCACACtactaaccttatgcctaaccataaccttaaattaagaccaaaaggctattttttgttttttttttctttcacgaTATAGCCACgatatgactttgtggctgtggtaactagtaacAACCGTTCGTTTCACAGGGAAATTCCTACCCGTCACCTCAGTTTCTAAACCATACGTTGCTGTCACCGTGCGGTGTGCCCCGTAGTATCAAACGCTGCCTACCAACTTTTTCCAGGCTGGGAAACGATACATTAAAACGGAGAAGAAAGCTCCATCGACAGAAGAACGGGGAAGAAGTGAAGGGGAAACCCTGTAACACTGGAGCGATCATGTTAGGCGAACGCCGCAATGGAAACCTGCTTGTCCAGCTGGGCCCGAAGCTACAGGCCTACCCAGAGGAGTTGATCCGGCAGCGGCGGACTCATGATGGCCAGACAGAGTACCTGATCCGCTGGTGCCTGCTGGCCATAGATGACGGTAGTGGCTCAGGTGGAGGGAGCAATGAGACAGGAGGAGAAGTGGGAAGCAGTTCAGGGGTGGGCGGTTCAAACTCAGGcgagagcaaaacggagaacatccTGATGTGGATGTCAATGGAGGACGTCTACGCCAACTGCCCCACGCTGCTGGGCAAGCGCAAGGCAGATGCCCAGCGGCCCCTccaggaggcagaggagaggccCGGTGGAGATTTCCCTAATGATGTCACCTTTGATGAGGTGGAGCTCTCTGACATGAAGGACGATGTCAAGAACTTGGTCAGGAGGGCCCGCAAGCAGATGACCAAGAAGAGCGACTTTGCCATcagcatcacacacaccatccatgTGCTGAGTGCCTACGCCAGCATCGGCTCACTGGTGGGTGTCTTCAAGGAGACGGGTGCCCTGGACCTGCTCATGGAGCTGCTCTGCAACAAGGAGCAACAAACCCGCAGAAGTGCTGGGAAGATGCTCCGGGCTCTGGCCTCTCATGACGCAGGGAGCCGTGCCTATGTGCTCCTGTCACTCAGCCAGCAGGACGGTATTGAGCAGCACATGGACTTTGACAATCGCTACACCCTCCTGGAGCTGTTTGCAGAGACCACCTCCTCTGAGGAGCATGGCATCTCTTTTGAGGGAATCCACCTCCCTCAGATCCCAGGGAAGCTACTGTTCTCCCTGGTGAAGCGGTACCTGTGTGTGACGTCCTTGATGGACAAGCTCAACACGGCAGGGGTGGAGTCAAGCTCTGAGCGGCAAGACGCACCAGGCTCCTCCTCAGGGGCAGGCCACCAGCCAGAGAACCTACGTGTCCAGCGAGAGTTTGAGTTCACCATGGCCATGGCTAACCTCATCTCTGAGCTGGTTCACGTCATGGGCTGGGACCACAACCGGCAACCGCCACAGTCCAGCAGCCTGGCCCAGAGCAGGGCCTGCGGGGAGGACCAGGAGGACGTGCCGCCCCGCCGCATGCTGCGCTCCATATTCCAGCCCCGCTTCTCTGCCTCTGCCTTTCCTGTCTTTACCACCTCAAGCATGGCAGCCACAACACCACCCAAGAAGAAGACCGGCAGCGGCTTCAGGACACGCACAGACTTTGCCAGCCGCTCTGCTTACGTGGAATACGTGCAGGACAACCTGAAGAGCGGCATGTTGGTCCGTATGCTGGAGGACTATGAGGAAGTCAGCGCAGGTGATGAGGGGGACTTCCGCTACAGTAACGATGGCTCGCCACCAGTGCAGGTGTACTGGAACTCCCTATCTCGGACCTACTGGGTGCACTGGCACATGGTTGAGATCATGGCCGCGGGCACCAGTGGACAGGGTGAGAAAGACGTCCAGGAGAAGGTCTCCTCCCTGACTGAGACCATCAAGCTAACGGCTGGTAAGAGGGGGTCACCTGCACCCACAGACTCGCACTTAATGAGTCAGACATTCTTCTCCAAGCCTCCTGGTGGGCTGTACTCGTTGCCTTACCTGGCTGAGGGGCTGCATGCTGATGGCGCCACCCTGAGCCGGGCTGAGTGGTGGGAAGTGCTCTTCTTCATCAAGAAGCTGGAACCAAAGCAACAGCAGGAGATCAACAACATCCTACGTCAGAGCCTCGATGAACAGATGTCAGACACAGATGAGGCCACTCTTATCCGGCTGTCGGTGCCAGGCGAGGTGGCCCGTAAGTTGCTCCACTACCTGAAGCAGACCCTGCAGAACTCGTGTCTGTGGGACCTGCTCTGCTCCCACTCCTTCTCTAAACACTACATGCGGCGCGGTGGGGGAGGCCTGGAGGATGACGAGCTGCTGCCCGACGGCTGCCCGGGCTCTTCTGGCCTGGGAGGAGGACAGGGCACCTCTTCATCTGCTGGCActgcttcctcctcctctgtcatgGGCTCATTTTCTAAGAAGCCTAAGAAGGAGAGTCCTACAGACTATATCTCTGACACCGAGTCTGAATTGCCCATGGAAGAGTCTAACTACTCAGAAGACCTGGAGGAGAAGATGAAAGTGTTCAACAACTCCAAGGTGCAGGGCAAGAAGACAGCCCTGGAGAAGCTTGGGGAGGTGGTGGACATCATGAAGAAGAGTGGCTCAGATCCAGTCCAGCAGCTGGCTGGGATCAAGTTTATCACCAAGGTCCTAGAGGACGAGGGGCCTCAGGAAAGGAGCACCCTCAGGACAGACGCTGTCCAGACCATCCGgGATAAAGTCCTGAAGCTTGTGGTCGACATGCTGTCTGGGCAGCCCAAGGAGAATGTGGTCAGCACCCTGCGTCTCACCCGCACCCTCATGGTCAAGTACGAGTGGAGGGTCTCCTTTGCCACGGAGGGGGGCGtcaaagccatcctctcttgtaTGCAGGAATACCCCACTGTTCCACAGATCCAGCAAGTTGCCCTGGCGACTCTGATGGTCGTCACAGGCGCCAGTAAGTATAACCTTAGCAGCATGAGCAGCTGCTGTCTTCCTCTTTCTGAGTCTGCCACACCCATGATGCTCGGAGTCTTTGCCAGTATTGGCTCTGCCACCCCCGAGGGCTCCAAGGGACTGCTGGCTGCCATCCCTGCTGCCATTGAACTGATGCTCAACACACCTGAgtGTATGTTGTCGGTAAGGAACGGTCTGTTGGTGATCATCATGCTGATCTCTAGTAGTAAGAGCCTGGCGGAGCAGCTGGTGGCCTGTGATGTCAGCACCGTGCTCAAGAAGTGCCTCGCGGCGTCGCGGCCAGAGAAATGGCTGGCCATCATCGCCCTCAACCACATCTCCATGGACCACAAGCTGGAGAAAAAAGAGTTGATGGAGGAGTTGGACTTCAAGGATGCGGAGCTAAAGATGCTGGTGGTGAGCCTGAAAGAGATGACAGCCAACAAGGAGGTGATCCTGACCCTGGAGCAGCTGCTCTGTGACAACTCCTCCCAGCTAGAGGAGGAGTGCAACCAGGTGACCCGTAGCCGAGAGACCTACCAGGACCTGGTGCGCCTCATGGACCAGCACCGGGCTGACCGGGCCACACAGCTCTCCATCCTCAGAATATTGAACAAGGTCTTGGACAATTACCAGGAGGATCTGCTTCCATGGCATGAGAGCATAGAACCATGCTTGTCTTCTATGACCACATTCATCAATGACCGTGAGGTTGTCCAGCAGCTCATCCGCTTCCTGTATCGCCTGGCCTCTCTGAACAAAGACTATGCCGTGGTGATGTGTCGTCTGGGTACAAAGGAAGCCCTGGTCAAGGCGCTGGACAAGCACAGTGTCAACCTGCTTATGGTCACAGAGCTGCGGGACTTAATCACAGACTGTGATAAGTACGCCAATCTCTACAAGAAAATGACCACCAGTGTTCTGGCTGGTTGCATACAGATGGTGTTGGGCCAAATAGAGGAGCATCGGCGAAGCCACCAGCCAATCAACATCCCCTTCTTTGACGTCTTTCTGCACAATCTGTGCcaagGATCTAGTTTGGAACTCAAGGAGGACAAGTGCTGGGAGAAAGTGGAGGTTTCCTCTAATCACCATCGAGCGAACAAGCTCACTGACAAGAACCCTAAAACCTACTGGGAGTCCAATGGCTGCACAGGTTCCCATTTTATCAACATCTACATGCACAAGGGGGTGGCTATTAGGCAATTGTCAGTTCTTGTGGCCAGTGAAGACTCCAGCTATATGCCTGCCCGCATTGTAGTACTTGGAGGAGACGACCCCACAAATATCAACACAGAGCTGAACACAGTCAATGTGCCTCCGTCAGCCAATCGCATTGTGTTACTGGAGAACATGACCCGCTTCTGGTCCATTGTGCAGATCAGGATCAAGAGGTGTCAGCAGGGTGGCATCGACACGAGGGTCCACGGTTTTGAGGTGTTGGGGCCCAAGCCCACCTTCTGGCCCGTTTTCAAGGAGCAGCTCTGCTGTCGCACCTACCTCTTCTACACCACCAAAGCCCACACCTGGTGCCAGGAGATCCTTGAGGACAAGGCCCAGCTGCTGCAGCTCTTCAACAAactGAACAGCGCTCTGCGACATGAGCAGATGTTTGCTGACCGCTTCCTGCCCGATGCCGAAGCAGCGGAGGCTCTGGGACGCACTTGCTGGGAGGCCCTCATCACCCCCATCGTACAGAGCATCACCATCTCTGAGACCCAAGTCCTCAGTCCCCTCTCCTGGTTACTCACTGAGTACCTGGACAACGCAGAGTCAGCCAGGCGCTGCAAGAGTCGGGCCGCCATCTTCAACTCCCGCGTCCGTCGCCTCACCCACCTACTGGTCCATGTGGATACCAGCCGAGTGAACACAGAGGAGCTCAAGCCGCCCATCAAATGCAATGgcaaagagggaaagaacaaagATGCAGCTGCTGTGTCCTCTTCGTCCTCCAACTTTGTCAAGCCGAAGGGGAAGAACATCAGCAGTATTGCAGGGATAGCACTATGTTGGCAGGGCGTGGTACAGAGACAGGTGAAGAAGTTCTTGGACTCGACGTGCAGTCTGCCAGACTTTGTGGAGCGTTACAGGAACATGTACCTCCATCTGAAGAATGCCATGGAGGAGCTGTTTGGCCAACAGACAGCATTTGTGCTGGCTCTCCGCCACGGTTTCTCTGCTGCTCTCCTACAGCTCTCCATCCTCACCGCCATGCATATGAGTGAGCGGTTTGCCCAGTACATCGACATGATGATCCAGGAGAGTGGAGTGGACTCTGGCAACGTGGAAACTCTTAACCAGTTGCAGCAGTTTCTAGAACCTATGCTCTTCCTCTCCGGCCTGGAGCTTGCCAACACCTTTGAGCACTGTTACAGGTACTACCTCGGTGACAGGCTGCTGGGCCAAAGCAAGGTGTGGCTGGAGACTGCTGTCATAATGCAGATAGGCACCTGCTTCCCAAACCGCTTCCCCCAGCAGATGCTGAAGAATCTCAGTGAGTCTGAGGAGCTGCAGCAGGAGTTCCACCTCTACCGCCTCCAGCAGCTGGACAAGACCCTGCAGGATGTCAACGAAGAGATGATGGATGATCAGTCGTCCGAGCCTGATGAGGAGAGTGAAGTGAAGGTGCTGGTCCTGTCTCCTCGCTGCTGGGCAGTCTCCTCACCCTGCTACCTGGACAACTCCAGCAGATACTTCCCCAAGCAGCTCTCCACCTACCTGGCCGAGTTCACAGATTTCTACTCTAACAGCCAGTGCATGTACAATCTGACCCACAGTAAGCCCCGGCGTCTACAGTGGACCTGGCTGGGCCATGCAGAGCTGCACTATGGCTCCTGCACTCTCTACGTCTCCACCCTGCAGATGTACATCCTCCTACAGTTCAACCACCAACCGGATGTATCTGTGGAGGCTCTTCAGCAGGCTACAGGCCTTTCTCCGACAGTGCTGGCCCATGCACTGTCTCCCCTCACTGCAGAGAAGGGCATTCTCACCACAGACAGCCCTGACAACAATCTTGTGAATGGAGTCCTGAGGTTGAACATAAAAGCTCTGTCTCAGAGTTTGGAAAACCACAGTTACTGCTACCTGCTGCCCAAGCAGACCTACCTGAATGTGGACGAGGACGCTGCCTGCTcgctggagaggaagaggaacttCATCTACTGCCTCGTCATCCAGATCATGAAGGCTGAGAAAGAGATGAACATAGACAACCTGGTGTTCAGAGTGTTGGAGACGTGTCAGAAGCGGGAGGTGACTCGTTCCCCAGGCTCGGTGCGTTTCAGCTGCAGCACTACAGACGTGCTGTCCTGTGTCATGCACGTCATCAGCAAGGGCTACATCAGGCGCAACGAGGAGAGCCCCCACATCGTGGAGTTCCTGCCTGAAGACCCCTCCACTCCCCAGAAGGGCCAGGCGCATTTCTCCTTCAGCAAGGCAGAGCTGAAGAATAACCCCAGCAGCAGCAACGCTGACATCAGCCTGGAAGGCATCTTCGCAGCCCCTCAGAGTGTGGAAGACGGGGTCCTGGAGGCTGTCCTGTTGTCCATGGGCCGGACTATGAACCAGGAGGAGGTCCGGCAGTTGATGCAGCGCACAGTGCAGCAGGTCTCTGGCACCCTGACTCTGGACCTGGACCGGGCAGAGCACCTGCTGGTCCACTGCAAGTGGAACATGGACGTGCTAATCCAGCGCTACACAGACGACCCAGACTCCCTGGTCATGGCTGCTGGGCTGAGGGGCTGGAACCCCCAGCCACCCCACAGCCCTGTGTCCAGCTGCCCTGTGTGCCTCATCTCTCAAACAGGGGAGGCAGAGCCTGTTCCCACCCTCTGCTGCATGCACTACTGCTGTCGGTCTTGCTGGCAGGAGTACCTCACGGCCAGAATTGAGCAGAACCTGGTGATGAACTGCAACTGTCCAATAACAGACTGCCGAGCACAACCTACTTCTCAGTTCTTCTTCAACATCCTGACCAACAAGGACACCATCGCCAAgTATGAGAACGCTCTCCTCCGGGGCTATGTGGAGTGCTGCTCCAACCTGACCTGGTGCACCAACCCCTTGGGCTGTGACCAGATCCTGTGCAGGGAGAACATCGGCAGCATGGGAACCTGCTCAAAGTGCTGCTGGTCCTCCTGCTTCAGCTGCAACTTCCCAGAGGCTCACTACCCAGCCAGCTGCAGTCACATGTCCCAGTGGATAGACGATGGTGGCTACTACGAGGGTATGACCATGGAAGCTCAGAGTAAGCACCTTGCCAAACTCATCTCCAAACGCTGCCCCAGCTGCCAGGCCCAGATAGAGAAGAACGAAGGGTGCCTACATATGACTTGTGCCAAATGTAACCATGGATTTTGCTGGAGGTGTCTCAAGCCATGGAAACCAACCCACAAAGATTACTTCAACTGCTCAGCTATGGTGAGTAAAGCAGCAAGGCAGGAAAAGAAGTTCCAAGACTACAACGAGAGATGCACTTTCCACAACCAAGCCAAGGACTTTGCCATCAATCTAGAGAGCAAAGTCTCCTCCATCAATGAAGCCTTGCAAATGAAGACGTTGACGTTTGTTATTGATGCCTGCAAAGTCCTCGCTCAAGCGCGCAAGGTGCTGGCCTACTCGTGTGTGTACAGCTACTACAACCAGGACACAGAGAAGATGGATGTGATGGAGCAGCAAATGGAAGCCCTGGAGCTTCACACCAATACTCTACAGATCCTGCTGGAGGAGACCCTGTTGCAGTGTACGGATCTAGCGTCCTGCATCCGTCTACTGAAGCCTGAGCACCTCAACACTGGCCTGGAACTCATCCGCCGCATTCAGGAGCGTCTGGTGGCCATTCTACAACACTCGACCCAGGACTTCCGAGTGGGATACAACTCCAAAACAGGACAGGAACTGGAATCTGCTCAAGCTTCAAATCTTTCTAAGAACACAGACGCCAACAAAGTggcTGGGGGCTCTGAGTCTGACAACCATAACAACGAGGGTGGAGATGAGGCAGAGGAGGATGAATGGTATGACGATGAGTACGTTCCCGAATGGCATGAAGATGACGAGGATGACTTCTTTTCTGATGATGACGAGTCCGAAAACCTAGAGAGGGATTTCAGTCCTTTTGACTAAACATCTGAAAATAGgaagaaaaaaatgtcagtctcaaTCTGTGCAGGCACTGCAAGCaccatataaatatattttgggaAAAAGCAGTActtaataaacaaacaaaaatccgTCAGAGAGAGCGATGGGGACAGAGAAAAGCCATGGTCTGGTTTGAAGTGAGGCTGGGTGTGATCCTTCATTTTTCCAGTCAGCCTCTTTGCGCTTAGCCTTCACAATTTCAGTCCCATGCCACAACTGCAATTGTTGGATGGGCACACTTACATGTTCCACTTATTGTTCATCACATAGGTTTGAATTCCTAGAGCCTCATTCTTTTTCACATGACGCTGTTTTGAAGCCGATGAGGGTACCATGACTGTCAGACATAATGAAGGATCCCTGTAAGAAAATATTTGAGGTGTGACGATATACTTGAGAAAAAGCCCATACTTTGTGTAATACAAATGCTACTTTTTCATTTACCAGCGTGACTGAAAAGGGATTTTATAATCCAGCGCTAGGAAGGCTGTTAAATTGGCAGAATGTTGTTCATTGCCGAATGGCTTGCCTTGATATATTTTTGTAATACATGGATATATGCCTTCATTCATAACGATAAAGTACTCATTCAGAAAATGTATATTTCCATAATGAAACTTAAAACACTGAAATATTGTATGTTAATTTTAGAAGGCTATTAAAAGCTCAAGACTGCGGTTAATACAATGTTTCTGCGACCTTTTCATGGGTTATTAAAGGGCTGCGAGGGGGAGATTGTGAGGAAAAGGATGTAAGGTATTGGGTGTGCCTGGCAACAGTAGCTGACAACTCGCAACATTCTTGCGCTGCATTGTAGTTCGCTACATACTTCTTCAGCGATTGGATCGTCACTGACCAATCAGTGTCAAAACCAGTGACACATTTTCAAACCGCTGCTTtacccatcggtttctggaccaatcagacggcCTTGAATGTGTTCGCAAGTCGGTGAAGGGTCAGGGAGGTACTCCAATCagtcaataaaatgtattttataaatccctttttacatcagcagttgtcacaaaatgCTTACACAGATACCCATCCTAAAAAACCCAATgtgcaagcaatgcagatgtagaagcacagagCCACTCATTGCGGAGATTAAACTAACGTCCGTGGGCGTAGCATTTGGCcggagcaaggagtctgggtagtCAGGCAATGAGGGAGTTCTATTAACCTGAGCTGTGGTGCACCGTTCTATTGTCCACGATGTGAACTGGCAAAAGCGGTGAGGGAGGAGCGCCCTCACAAATGGAACAGTAATCTGCGCCGCTTTcatgtcaacaaggcagcatggtgcataGTCTAAAACCTACATCTCTTTTCcattaaatgttttaattttcaaactagttttcattgggaagtCACAGAAAGCGTTTTTATCAAAAGCAATAACTTTTGCATATAAAAACataatcctactcattactctaCTTGCTTAATCTAGCCTAGGCTACATCATGcttttgaaataaataaaaaatgtgttgttgaaATTTTGTCAATGTTTATCTGTATATGGGTTGGGATATTTGATATCTCAACATGCCACTTTGCTGTTGAGAGATACTAATATTCACCATGTGCATCTtcaaaaaatgtatatttctgATCTCAATGTTgaacttgtgcaatgtcagcggACTAAATAAATGCGCTTTCTGCTATCATGCTGGAGTGATTTCACTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82289 lncRNA downstream 185009 66843366 ~ 66883687 (-) True tjap1
TU82286 lncRNA downstream 280494 66787911 ~ 66788202 (-) True G74445
TU82226 lncRNA downstream 334049 66663962 ~ 66734647 (-) True G74386
TU82222 lncRNA downstream 347153 66647427 ~ 66721543 (-) True G74382
TU82566 lncRNA upstream 89615 67225402 ~ 67225691 (-) True G74688
TU82570 lncRNA upstream 100329 67236116 ~ 67236327 (-) True G74692
TU82571 lncRNA upstream 101322 67237109 ~ 67237567 (-) True G74693
TU82577 lncRNA upstream 135947 67271734 ~ 67271956 (-) True G74699
TU82589 lncRNA upstream 157349 67293136 ~ 67293369 (-) True G74711
XM_036983260.1 mRNA downstream 9729 67041196 ~ 67058967 (-) False si:dkeyp-121d4.3
XM_036983252.1 mRNA downstream 9754 67044013 ~ 67058942 (-) False si:dkeyp-121d4.3
XM_021608744.2 mRNA downstream 9755 67044013 ~ 67058941 (-) False si:dkeyp-121d4.3
XM_036983256.1 mRNA downstream 9757 67044013 ~ 67058939 (-) False si:dkeyp-121d4.3
XM_021608727.2 mRNA downstream 29864 67014465 ~ 67038832 (-) False znf318
XM_021608822.2 mRNA upstream 90942 67226729 ~ 67235434 (-) True LOC110527505
XM_021608834.2 mRNA upstream 116505 67252292 ~ 67271239 (-) True acss1
XM_021608848.2 mRNA upstream 152775 67288562 ~ 67291218 (-) False LOC110527518
XM_021608857.2 mRNA upstream 153459 67289246 ~ 67291218 (-) True LOC110527518
XM_021608968.2 mRNA upstream 250960 67386747 ~ 67387983 (-) False LOC110527584
TU82368 other downstream 58109 66994682 ~ 67010587 (-) True LOC110527436
TU82292 other downstream 245880 66818844 ~ 66822816 (-) False tjap1
TU78947 other downstream 2687340 64369902 ~ 64381356 (-) True LOC110526867
TU77510 other downstream 3790944 63277208 ~ 63277752 (-) True G70013
TU76624 other downstream 4650400 62411522 ~ 62418296 (-) True G69210
TU83185 other upstream 250722 67386509 ~ 67388044 (-) True LOC110527584
TU83338 other upstream 533802 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other upstream 533802 67669589 ~ 67681730 (-) True LOC110527687
TU83574 other upstream 1022174 68157961 ~ 68162002 (-) True sdhaf4
TU83653 other upstream 1074393 68210180 ~ 68211706 (-) True G75682

Expression Profile