RNA id: XM_021608942.2



Basic Information


Item Value
RNA id XM_021608942.2
length 1973
RNA type mRNA
GC content 0.46
exon number 14
gene id abhd12
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67415739 ~ 67443770 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGGAAACTATGGGTACCGATGAAAGACAAATtgtaccaacccaccacacctgCTGCTGTCACCGCTGGCGGACAGCACATTACCGGTGTCCTCGCTTGTCATGTTGTcagtttaataaaaaaataacaacaaaGTGATGCGAAAGCGAAATAACTCGCTCACCGTGGACCATGACAGCTCTTCCACCAACACATTGCTGGACAGCAGTCCGGATATAAACTACTGTCACAAGAGAGGGGAAGGGGTTCCTGAGCCTTGTGTACCATCTAGCTCGGAATCAGACAAAAAAATGGGCAGACCATTTCGAAGATATGGCCTAATGGGCAGATTGAAGAGGATCCTCCTGTGGGTGCTGGGAGTCTACATAACCATCCCCTTCCTCGTCAAACTATGCCCCTCAATTCAGGCAAAACTAGTATTTTTAAATTTTGTGCGGCTGCCCTATTTCATTGACTTGAAAAGGCCACAAGACCATGGGTTGAACCACACCTATAACTTCTACCTGCAGCCAGAGACTGGTGTCAACATTGGTGTATGGCACACAGTCCCAGACCAGATGTGGAAAGAGGCGCAGGGGAAGGACAGAGAGTGGTATGACAGTACCTTTAAATCGCCCTATCCAGTCATGCTGTACCTTCACGGCAACGCTGGGACAAGAGGAGGGGACCATAGAGTTCAGCTCTACAAGGTCCTTAGTTTATTAGGCTACCACGTAGTCACATTTGATTATAGAGGTTGGGGTGATTCAGACGGGAGCCCCTCTGAGAGCGGAATGACGTCAGATGCCCTGTTCCTCTACCAGTGGATGAAGGAGAGGGTGGGGAGCAAACCCCTCAACGTCTGGGGCCACTCACTGGGGACAGGGGTGGCCACTAACCTAGTCCGACGTCTGTGTGACAGAGGGACGCCCCCAAACTCCTTAGTCTTGGAATCTCCATTCACCAACATCCGAGAGGAGGCCAAGAGCCACCCCTTCTCTATGGTCTACCGGTACCTTCCAGGCTTTGAATGGTTCTTTTTAGATACCATTTCAGCAAACGACATTCGATTTGCCAGTGACGAAAATGTGGACCACATATCCTGTCCATTGCTTATCCTTCATGCCGAGGATGACTCAGTCGTGCCCTTCCATCTAGGGAAGAAGctgtaCAACATTGCTTCCCAGTCCAAGAGCCTGAGTGGACACAAGCTTCAGTTCATcccctttcctgtctctctggccTACAAGCACAAGTTCATCTACAGGAGTCCTGAGCTGCCACACATACTCAGTGACTTCCTTGGCACGACTCATCCCCATGCATAACCGACAAGAACATTTCCACCTGTCCATTGTTTCCTCTTacaacccccacccaccccccacacacgcgcacacacacacactgaaactctTTGACTGTATGCTTTATGGTTGGTGTGTACATATCTCATAAAACATTGAAATGTACACGCATGGACTGAAGATGATGCATCCATTCCTTTATTTAGCATTCCTTTGACACCTAAAATTCCTGCAAGACATAAACGGAACACTGGCAAAGAGCGAGGGATGGACAACTGGCTTGGCTTGTTGTCAAGGTTACACAAACCAAGAGGATGGCTTGAGCACAAAGATGAAATATGCACATATTTTAAGGAGCCAAGACAAACATCATGGAGTGGGAAGAACAGTGGATCGAGCAGGGAAGCAGTGTTTTTAATTGCACAATGTTTGGGGAATAGACATTCATACACAAGGCGAGGAAGGAGAACGTTTTTCATTTTACAACTCATCTGCAGCACAGAGCAAATTCTGTTTATACCAGTCCAGTTTATTTTCCCAATtttatttttgttacattacagatcATGATTTAAAAGTATCTATTATATTTGACTGATCTCAGATGAGACATTTTGGATTCTAGCTTTTCTCTATTAAAGGAAATGTATAACTTGAATTAAATATTATACATTTGACCTAACATTGA

Function


GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0047372 acylglycerol lipase activity molecular_function

KEGG:

id description
K13704 ABHD12; abhydrolase domain-containing protein 12

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU83182 lncRNA downstream 2598 67402541 ~ 67413256 (-) True G75246
TU83190 lncRNA downstream 30479 67385119 ~ 67385375 (-) True G75254
TU83169 lncRNA downstream 41135 67374499 ~ 67374719 (-) True G75237
TU83168 lncRNA downstream 41760 67373883 ~ 67374094 (-) True G75236
TU83166 lncRNA downstream 47453 67368186 ~ 67368401 (-) True G75234
TU83247 lncRNA upstream 71042 67514812 ~ 67515221 (-) True LOC118966711
TU83250 lncRNA upstream 75044 67518814 ~ 67519037 (-) True G75314
TU83251 lncRNA upstream 76143 67519913 ~ 67520212 (-) True G75315
TU83255 lncRNA upstream 80946 67524716 ~ 67524946 (-) True G75319
TU83258 lncRNA upstream 84769 67528539 ~ 67529102 (-) True G75322
XM_021608976.2 mRNA downstream 26555 67386747 ~ 67389299 (-) False LOC110527584
XM_021608984.2 mRNA downstream 27856 67386747 ~ 67387998 (-) False LOC110527584
XM_021608968.2 mRNA downstream 27871 67386747 ~ 67387983 (-) False LOC110527584
XM_021608848.2 mRNA downstream 124636 67288562 ~ 67291218 (-) False LOC110527518
XM_021608870.2 mRNA upstream 2671 67446441 ~ 67491007 (-) False ninl
XM_021608893.2 mRNA upstream 2671 67446441 ~ 67491007 (-) False ninl
XM_036983326.1 mRNA upstream 2671 67446441 ~ 67493348 (-) False ninl
XM_021608877.2 mRNA upstream 2671 67446441 ~ 67499228 (-) True ninl
LOC118966711 mRNA upstream 70990 67514760 ~ 67515217 (-) False LOC118966711
TU83185 other downstream 27810 67386509 ~ 67388044 (-) True LOC110527584
TU82368 other downstream 405267 66994682 ~ 67010587 (-) True LOC110527436
TU82292 other downstream 593038 66818844 ~ 66822816 (-) False tjap1
TU78947 other downstream 3034498 64369902 ~ 64381356 (-) True LOC110526867
TU77510 other downstream 4138102 63277208 ~ 63277752 (-) True G70013
TU83338 other upstream 225819 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other upstream 225819 67669589 ~ 67681730 (-) True LOC110527687
TU83574 other upstream 714191 68157961 ~ 68162002 (-) True sdhaf4
TU83653 other upstream 766410 68210180 ~ 68211706 (-) True G75682
TU84158 other upstream 1131823 68575593 ~ 68577744 (-) False LOC110527951

Expression Profile


XM_021608942.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
End of interactive chart.

XM_021608942.2 Expression in each Bioproject

Bar chart with 21 bars.
XM_021608942.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.