RNA id: XM_036989819.1


Basic Information

Item Value
RNA id XM_036989819.1
length 6030
RNA type mRNA
GC content 0.54
exon number 32
gene id LOC110527634
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67575052 ~ 67593740 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCATCTTCTCCTGTCTCTCACCACAGCGTTCTGTAGTTCAAGGGCTGCGATCAACCTTGATGTGGTTTCAAAGCGGACAGTTCTGGTGGATCATTGGCCCACGTGCTCACAACACCCATCGTCTGGTTGGAGTATTTTCTGTTCCGAGGAAAGGATTGCATCGCAGTGTCTATGGAACCCAAGAGATTCTGACATGTGGCTTTAAGTGAAAACAGCAGCATGACCGACAAACCCAAAATTCATGTGTTCATGGGTGCCCCTCCCCTCACACCTGTGTCTGATGTTGATGAGGGAAAGTCTGGTCAGTGGAGGACCATGGAGCTCTGCTGGCAGGGGGGCAGACTGAGGGCCAGGGAAGATGAGGGTGGGATCCATGGAAGTGACGGTCGAGGTGAGATTGACGCTTCATCAGAGCCCGGAGAGCTGCTCAGTACCAGCAAGCACGGTACCAGTCTCCAAGGTCCTGAGACCCAAACCGGATTTCCCTTACAGAGAGAACCAGGCTGTAAAGAGACAACCCAGGCCGGCCTGGCCCCTTTGGCGAGCTCAACTCCCCAGAATGAGCAAACAGTCGTTAATGATGAGGACATGTGTTCTGAATCAGTGAAGGAGTATCTGGACAGCTGCTTCCCTGCCGGGCAGCCTGACCCAGGGCCTGAGTCTGCCCCTGAGAGAGCAGGCATCCAGTCAGATCCAGCCCCTGCTCAGTCTGTGTCTGTGGAGACGGAGTACCTCAGTGCATGGACACTCAGCCAGGCCCTGCTCCTGAGAGGAAGACTGGGGGGACAACCAGAAACCAGCCCTGTGAAAACCAGACTTCCACAAACGCCACCTAAATCCACACCATCCACTTTCACCAGCTCCCCAGAGCTGTACAGCCCAGCCACCCCCACTCAGTCCCCCAGAGAGCGGGGCCAAGGAGGGACCCAGCAGGGCTCCATGGAGCTCTTCTATGAGCCCCTGCTGAGCCAGAGgcaggaggaaggaggggtgaTACTGGAGGCCACTGCTGATGGGGTGCTCTGCTCTCAGCGTAACCCAATGGGGAACAAAGAAGTGGGTGTAGTCTCCAAAAGCCCTCTCCCATCACCTAGATCTCCTGTAAATACCTCACCGGAACCCCCAGCCCCTAAAAGGAGTAAAGTCTCCCCCACAATAGACAGAACTGATCAGTCATCAGACCAGACTACAGTGAAGGGTTGTGTTACTTCCCAAGCCCACACCACCCTGGCTAGATGTGGCACCCAGGGAGTGCGTTACTCCATCTTAGTGGCCGTGGTGCACCCGTGTCATCTGAAGGAGATTAGAGTGAGGTCCGGGGCGTCTGCTGGCTCCTGTATCCCCCTGGCCTCTGTGGTGGTTACTGACCAATCAGAAGTGGAGATGAAGGTGGTCCTGTGGAGGAGGGCAGCATTCTGGGCCCTTACTGTGTATTCTGGAGATGTGCTGCTCATCACTGGTGTGATGGTGAATGAGgacaagtggagaggagagacggtTCTGCAGTCGTCGTACAGCAGCAAGCTCCTCAACCTGGGCCAAGTCACTGGCAGCAGCTCACCTCTAGTCCCACAGAATGTGAATGGCCGGACACTGAGGTCTCTGTGTGGTTACCTGCGTGAGAAGCGTCCCCTGCTGGTGTCCCTCCCTCCTCGCGTCCCTCAGGATCCTAACACCATCGCCCACGCCCGTCTCAGGACCCTGAGACCTGACACGCTGGTGCATGCCCTGCTTCGAATCACACACACTGAGATGATCACAGGGTGGCGAGCCGAGGCAGAGGGCACGTCCAGGGTAGGAGGAGTACTGAAGGCTGTGCTGACTGTAGAGCAGGGGGATGGACAGCAGGGGGCAGTGGTGCTCTGGGGAGCTGCCTTGACCTGGCTGCAGCGTATCAACAGGAACAAAGATGCAGTGTGGGTTTTCCGTTTGCTCCTGGTAAGAGAGAGTATGACGACAGGCCTGCTGGAGCTGCACTCCACCCCCTGGGGCTCCTGTGAGCCTCTCTTCCCCGACGACACGCGGGCGCTGGAGTTCTACCGGCCAGGCCCTGCCAAACATACCAGCACCAGCTTGGAGATAGACCTGCACACTCTCCTGTCCCAGAAGTACACTGGTGATGTGGAACTGAGAGTTCACGTCACAGCTTTCCAGTTTCAAGGCAGCCCCTCCCAGAATGCACTGCAGCGGATGGACAGCGACACGCATCTGGAGAGTATCCTGGACACAGTGTCAGGTGACATCACGTTCACAGGTTGTGGGCGCTGCGCTGCCGAACTGGACACAGATGACAACGGGATCTACTGTCCCTGCTACCCCTGCCTCCCCCATACTGGAGTACGACGCTATTACAGGCCAGTAATACTGACAGTGAAGAATGGGGAAAGCCAGGTGTGTGTGCAGGTGCCACCTGTCCTGCTGCAGAAGATCCTGCTCGACACTCCTCCTGACAAGCTGAGCAAGACGGTCGCTCCAGGGTCAGATGTGAGGTTAGTCCAGGTAGTGGCTGAGAGGATTTATTCATTGCTGTCCATTCCCAGACGCACCTTCCTCCTTACCGTCCGCAGCCACTTCCTGTGTGACGAGAACAGCGTCCCCACTGCCCAGGACTTTCTACTGCTGGATTTTCATGACCCCAAATCATATATCATCATCTATGATCCACTGACAGGCATCATGTCTGAAGCACTAAGAATGGATGAAGCTCAGTACAGCATGAAAATGATTGAAAATGAGCTGATGATGAACTTATCGACTTATGAGTTCATGCCACCTGTGGAGGTCAAGAGTGAGCCCTACATACCCGAGACAGTTCATGGACCCTACATTCAAATACTTGAGGAGCCCAAACAGAGAGGCTTCAGATTCCGCTATGAGTGTGAGGGTCCGTCCCACGGTGGGCTCCCAGGGGCCTCCAGCGAGAGGAACAGGAGAACCTATCCCACTGTCAAGGTGTCTAACTATGTGGGGATAGCCAGGGTAGAGGTGCAGCTGGTGACCCACTCTGACCCCCCCCAGGTCCACGCTCACAGTCTGGTGGGGAGGCACTGCTGCACGGAAAGTGGAAAATGCAGTGTGGATGTGGGCCCCAATGAACTCACAGCACAGTTCAGTAACCTGGGCATCCTCCATGTCACAAAGAAAGGGGTGGGGGAAGTGTTGTTCAAGAGACTGAGAGACGAGAAGAGGAGACAAAGGGGGCAGCACTACCATTTTACTGATGCAGAGGAACAAGCCATATTGAGAGAAGCCAACGAGCTGGGCAGGATCATGGACCTGAACATAGTGAGGTTAAAGTTCACGGCCTACCTCCAGGACAGTAACGGAGGGTTCTCTAGGGCCCTGAAGCCAGTGGTCTCCAATCCCATCTTTGACAGCAAGTCACCCAACGCTTCCAACCTGAAAATCTCCCGTATGGATAAGACCTCTGGGTCTGTGCTGGGAGGGGATGAGATCTTCCTACTGTGTGACAAAGTACAAAAAGATGATATTGAGATCCGCTTCTatgaggaggatggaagctgggAGGCCTTTGGTGACTTCTCTCCAACTGATGTCCACAAGCAGTATGCCATCGTGTTTAAGACACCCCCGTACCACAGCACAGAGATCGATCGTTCAGTCACTGTGTTCCTCCAGTTGAAAAGGAAGAAAGTGGGAGACTGCAGCGACCCCAAGCAGTTCACCTACGTTCCTCAAATTCAAGATAAAGAGGAGGTTCAACGTAAGAAGCAGAAGCCCCTCCCCTATAATGACCCATGGAGAGGGCCTCTGGGAGGGGCTGGGGGGGCAGGGAGAGGTGCCGGAGGACCAGGAGGAGCAGGATTCCAGTTTAACCAGCAGATGAATGGATCAGGGTGGATGGGGGGTGGATTCACTTGTTTTGGGGGTGGTGGAGCCCAGATGTCAGGCACCACTGCCCAGGCTGAGGGTACCCAGCAGCAAGCTGGAGGGATGGCCAAACAGATGCCAGGACAGACGCCAGGACAGACAGCCTCACCACCACTACAACAGCAGCTCTTCCAGATTGCTGCTACTCTCCAGAGCAGGGCCACTCGGATGACCAAGCAGACAGCTGGGGCTCTCCTACAGTACTGCACAACTGGGGACGTCCGGGTCCTTCTGGCAATGCAGAGACACCTATGTGGGGTCCAGGATGAAAACGGAGACACGCCTTTGCACCTGGCCATCATTCACCAGCAGTCAGCTGTGATCCAGCAGCTGGTTCATACACTCCTCACCATCCAGCAACGCAAAGTCCTCGACAAGCTCAACCACCTCAGCCAGACTCCTCTCCATCTGGCGGTGATCACCAGGCAGGTTAAGGTGGTGGATGTTCTCCTGAGAGCCGGGGCTGACCCCACCCTGCTGGACCGGGACGGCCGGACCCCCCTGCACCTGGCAGCGCTGGCCGGGGACGACGTCACACTCAGGGTCCTCCTGGGGCACCTAGGAGAACGTTACAACCACCTGGTCAACATGGCCGACTATCATGgtctccatcctctccatctggCTGTTCGCAAGGGAGGAGAGCGCTGTCTACGTCTGCTGGTGGGGAGCGGGGCTAAGATCAATGACCCCGAGCGGGGGAGTGGATGCTCCGCCCTCCACCTGGCTGTTAGAGAGAACCTCTTGAAAGTGGCCTGCACTCTCATCACAGAGCTGAAAGCAGACGTAAACATGTGTACGTTTGGGGGTAACACTCCTCTCCATCTGGCCGCCAGTCAGGGCTCCCCCACTCTCTGCTCCATGCTCATTGCTGCAGGAGCCGATAAGAATCTGGAGAATGATGAGCCGCTCTTCTTAAGCTcctcttcctctgatgaggagcaAGAGGATGGACCAATAAGAGATTTCAGAGAGTTACAGATCCAACAGCAACCAACCATCCCACCACCGTTGGGGAAAGAACAAGTCAACCCTCGTAAGAGACCAGCAACAGGACATACACCCTTTGACCTTACTAAATGTCAAAAGGTGAGAGACCTTCTAGACACCAGACAGAGACCCAAGTCCAGCCAACACTCAAGTAAAAAGCCTAAACCAAACAGCATGGACGAAAGTGAGCAGCTAGACAGTGAGACGCTCCATAAACTGTGTGAGCTCCTCAGTCTGGGCGATGTGCCCTGGAGACAGCTGGCAGAGAAACTCAACATGCTCTCCCTGGCACACCTGTACCAGGAGAGTCCCTCTCCCTGCTACAAACTGCTGGAGAATTACAAGttgGGTGGCGGTCCAGTGGAAGGACTGGTGGAGGCTCTGCAGTCTCTGGGTCTGACTGAAGGAGTGCGACTGCTGAGACGGGCTGAGCTGAGAGAGGACAAACAGAACACAGATCAGACAGTGGACAGCGGCTTTGGGAGTCAGCCAATGGATGAGCCAGCCTTGGCCAACCAGTGAGCACCAGGAAGGGTGAGGGGTAGGACCAGCTCGGTGGGTGGGAGGTTTCAGTCCAGCATTTCATCTGGGAGATATAACAAACCCTGTTCAGCACACCCTATGGGGAAACCATTGAGAATTGGATGTCATTCCAGAGCCTTTGCTGATGAATGCAGAATTCTCTCTGCCATGACTGCAACGTTGACAACTCACATTGTTGGGCATCCAGATAATGTTCTTGTACGTTATTTTTCTTATTCAGACAGAAAGCCGAAGGCAACAAACTAAGGACAACTCGGTCTCAATATGTACAGTAATTATAAGTGGCCTCATCTCCTTACATTATTTCTGATGGTGAAAGTTGACAAAAGATAGGCTGGTCTTTTTTAGTGGTACATTGACACCTTCCAAAAAGTCAAAGTATAaataagaatctcaaatatgcaATGTCAAATTGTTGAATGGAATTATGAATCAATTTCACACATATTTATTGGCTGACAGTCTTACTAATACTGTGTATTAATTTGGTTTAACATTCACCAAATAATTGTACAGCCATACTGCAGGTGTGAAACGTTTGCGAGTGTATTTGCCATGTAATGTTAACTATATCTTGTCGTTGAATTAAATGAATTTCTGACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83267 lncRNA downstream 35222 67539597 ~ 67539832 (-) True G75331
TU83263 lncRNA downstream 41093 67533742 ~ 67533961 (-) True G75327
TU83262 lncRNA downstream 41470 67533381 ~ 67533584 (-) True G75326
TU83261 lncRNA downstream 43231 67531594 ~ 67531823 (-) True G75325
TU83258 lncRNA downstream 45952 67528539 ~ 67529102 (-) True G75322
TU83321 lncRNA upstream 48719 67642459 ~ 67642675 (-) True G75383
TU83322 lncRNA upstream 49481 67643221 ~ 67643600 (-) True G75384
TU83323 lncRNA upstream 49950 67643690 ~ 67643964 (-) True G75385
TU83354 lncRNA upstream 129884 67723624 ~ 67725800 (-) True G75413
TU83367 lncRNA upstream 157727 67751467 ~ 67751829 (-) True G75426
XR_005052590.1 mRNA downstream 58239 67515286 ~ 67516815 (-) True LOC118965291
LOC118966711 mRNA downstream 59837 67514760 ~ 67515217 (-) False LOC118966711
XM_021608877.2 mRNA downstream 75826 67446441 ~ 67499228 (-) True ninl
XM_036983326.1 mRNA downstream 81706 67446441 ~ 67493348 (-) False ninl
XM_021608870.2 mRNA downstream 84047 67446441 ~ 67491007 (-) False ninl
XM_021609108.2 mRNA upstream 44991 67638731 ~ 67642121 (-) True LOC110527672
XM_021609131.2 mRNA upstream 75933 67669673 ~ 67681775 (-) False LOC110527687
XM_021609138.2 mRNA upstream 75933 67669673 ~ 67681775 (-) False LOC110527687
XM_036983393.1 mRNA upstream 132398 67726138 ~ 67793349 (-) False LOC110527713
XM_021609172.2 mRNA upstream 132398 67726138 ~ 67793350 (-) False LOC110527713
TU83185 other downstream 187010 67386509 ~ 67388044 (-) True LOC110527584
TU82368 other downstream 564467 66994682 ~ 67010587 (-) True LOC110527436
TU82292 other downstream 752238 66818844 ~ 66822816 (-) False tjap1
TU78947 other downstream 3193698 64369902 ~ 64381356 (-) True LOC110526867
TU77510 other downstream 4297302 63277208 ~ 63277752 (-) True G70013
TU83338 other upstream 75849 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other upstream 75849 67669589 ~ 67681730 (-) True LOC110527687
TU83574 other upstream 564221 68157961 ~ 68162002 (-) True sdhaf4
TU83653 other upstream 616440 68210180 ~ 68211706 (-) True G75682
TU84158 other upstream 981853 68575593 ~ 68577744 (-) False LOC110527951

Expression Profile