RNA id: TU83286


Basic Information

Item Value
RNA id TU83286
length 475
lncRNA type sense_over
GC content 0.43
exon number 1
gene id LOC110527634
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67575052 ~ 67593740 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAATTCTCTCTGCCATGACTGCAACGTTGACAACTCACATTGTTGGGCATCCAGATAATGTTCTTGTACGTTATTTTTCTTATTCAGACAGAAAGCCGAAGGCAACAAACTAAGGACAACTCGGTCTCAATATGTACAGTAATTATAAGTGGCCTCATCTCCTTACATTATTTCTGATGGTGAAAGTTGACAAAAGATAGGCTGGTCTTTTTTAGTGGTACATTGACACCTTCCAAAAAGTCAAAGTATAaataagaatctcaaatatgcaATGTCAAATTGTTGAATGGAATTATGAATCAATTTCACACATATTTATTGGCTGACAGTCTTACTAATACTGTGTATTAATTTGGTTTAACATTCACCAAATAATTGTACAGCCATACTGCAGGTGTGAAACGTTTGCGAGTGTATTTGCCATGTAATGTTAACTATATCTTGTCGTTGAATTAAATGAATTTCTGACAACGG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83267 lncRNA downstream 35220 67539597 ~ 67539832 (-) True G75331
TU83263 lncRNA downstream 41091 67533742 ~ 67533961 (-) True G75327
TU83262 lncRNA downstream 41468 67533381 ~ 67533584 (-) True G75326
TU83261 lncRNA downstream 43229 67531594 ~ 67531823 (-) True G75325
TU83258 lncRNA downstream 45950 67528539 ~ 67529102 (-) True G75322
TU83294 lncRNA upstream 7608 67583134 ~ 67583433 (-) True G75356
TU83295 lncRNA upstream 8456 67583982 ~ 67584381 (-) True G75357
TU83296 lncRNA upstream 8871 67584397 ~ 67585106 (-) True G75358
TU83298 lncRNA upstream 15328 67590854 ~ 67591084 (-) True G75360
TU83321 lncRNA upstream 66933 67642459 ~ 67642675 (-) True G75383
XR_005052590.1 mRNA downstream 58237 67515286 ~ 67516815 (-) True LOC118965291
LOC118966711 mRNA downstream 59835 67514760 ~ 67515217 (-) False LOC118966711
XM_021608877.2 mRNA downstream 75824 67446441 ~ 67499228 (-) True ninl
XM_036983326.1 mRNA downstream 81704 67446441 ~ 67493348 (-) False ninl
XM_021608893.2 mRNA downstream 84045 67446441 ~ 67491007 (-) False ninl
XM_021609108.2 mRNA upstream 63205 67638731 ~ 67642121 (-) True LOC110527672
XM_021609131.2 mRNA upstream 94147 67669673 ~ 67681775 (-) False LOC110527687
XM_021609138.2 mRNA upstream 94147 67669673 ~ 67681775 (-) False LOC110527687
XM_036983393.1 mRNA upstream 150612 67726138 ~ 67793349 (-) False LOC110527713
XM_021609172.2 mRNA upstream 150612 67726138 ~ 67793350 (-) False LOC110527713
TU83185 other downstream 187008 67386509 ~ 67388044 (-) True LOC110527584
TU82368 other downstream 564465 66994682 ~ 67010587 (-) True LOC110527436
TU82292 other downstream 752236 66818844 ~ 66822816 (-) False tjap1
TU78947 other downstream 3193696 64369902 ~ 64381356 (-) True LOC110526867
TU77510 other downstream 4297300 63277208 ~ 63277752 (-) True G70013
TU83338 other upstream 94063 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other upstream 94063 67669589 ~ 67681730 (-) True LOC110527687
TU83574 other upstream 582435 68157961 ~ 68162002 (-) True sdhaf4
TU83653 other upstream 634654 68210180 ~ 68211706 (-) True G75682
TU84158 other upstream 1000067 68575593 ~ 68577744 (-) False LOC110527951

Expression Profile