RNA id: TU83338


Basic Information

Item Value
RNA id TU83338
length 2260
RNA type TUCP
GC content 0.46
exon number 5
gene id LOC110527687
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67669589 ~ 67681775 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTACAGATCAGTCCAGCCCCGCTCTCTCATAAGAGCAGCGCATAAACGTATGctcgcacactcacacacccaacACGCAGAGATACACACTCGcaggcacactcacacacacagacgcacacgcaGACAGGCACACCGAGCAGCCTAATCTACCAGCTCCAAGACGCAGCCAGAGCCAGCTAAAAGACACAGCCCCATAACAGCAGACCAGCATGGATGCACTGAAGAAAGGATTCTCAATTGCCAAGGAGGGCGTCGTGGCAGCAGCAGAGAAGACCAAGGCAGGGGTGGAGGAGGCAGCTGCCAAAACTAAGGAGGGAGTCATGTATGTGGggaacaagacaaaggaCGGGATGGTAGCAGGTGTGAACACAGTGGCCCAGAGAACGACTGACCAGGCCAATATTGTCGGGGACGCAACGGTCGCCGGGGCCAATGAGCTGTCTCAGCAAACAGTGGAGGGGTTGGAGAATGTGGCAGTGAACTCCGGATTGGTGAACCAGGGTGACTTCTCACAGGGAGCTGAGCAGGCCGGACAgtaggagtgTTGGTCCTGACCTCAGTGATTAGCAGCGGTCTCCCTCGTCTTCTGATTTAGAAGAGCTGCTGCTTGTCCTGCGTATCCCATCGTCACCCAATGGGTCCTGGGGAACCTTACTGCCCCCAGCGTCTCCTCTCTGATGCTTTCTTTGTGTGAATCgatggaaacaacaacaaaaaatcaaaaAGATCCTCCCCAGCCAAAACAACCCTCAACCATAAACACTCTACACATTCCTACCCTAATGCCTTTACCGTCCATATACCTCATCCCCGACATTTACCCACCTTACCACTGTGACCATCCTCACCCACCATCCCCTGTGCCCACTCAAGATCACCttatcacacatacagtacacacacgcatatacacacacacgcatatacaccACAACGTTGAGAAAGACTTCTCagaacaatatatattttttctccccAAGAGTTTCGGAAATGTGAGACTTACTGGTAGTGTTCACGCTGTCAGCTAACGTAACACCTGTACTTATACTGTAGATGTACTTATATCAGTGTATGCTTTAGCCAGGTTTGTTGATTAATATGTGTTTGAAGCCTGTGTATATTTAACCCCTTGTGTCTTAATGCCTGAAATCCCCTTATTATGACAGATCGGGGTTCAGGGTCGGAGTGAAAGTGGAGTTATGGGTTAACAGTATCATATTGTCTGTTTTACTCCCCATATTCACATGACCGATCACGTTACCCAGTCTCACACCTTCAATGGGGCTGCAGTACATACAGGGAACTATGTATCTCATAAACAGATACTGTCTGGTGTTTCCAGCTGTCTTTCCACTCAAACCTGGGTCTGCAATTATAGCGTTATCAAAGAGAGAACGGTTACATGGGGGGTTTGCAATGGCCTTTATAATTTCACTAGTTGCAATGAAAGGCAATAAATAAGATCTGTTGAGGTGTTTTTGCATGTGATCAGATTAAAGATAAAGTGCCCAACAGATTCAGTATGTAGGCCTACCTCAGAAGTGGATGCAAGTAGTCGCCAGGTGAAATACCTTGAcatcagtggtggctggtgggaggcgttataggaggatgggctcattgtaatgactggaatggaatatATGGAACGGAGTCCAATGTGGTTTCATgtcattccatttattccattccagccattacaatgagcccatccttctATAgcgcctcccaccagcctccactgcttgaCATCCCATACATCTGGTCTCAGAGGAAACAAATCTCTCCACCCATTCGTCATGCTTTTACTGCTCAGTCATACAAGACACACCTCCTGTCACTCAACAATGTGCCCTGGCCCCTCCCCTGTGTCTGCTCTCCTGGCTAAAACAGGTCTTTTAAACCATTACAGTGTTTGCCCTTTGAAGCCATCTGAAACGAGACTGCATGTTGCCTTACTAACAACCAGACACATACTCAGACACATACTCAGACACACATTCATTGGTACTAAAAAACAACCTCACAAATTAAAATGCACATATCACACATTTATCCAAGAATTAGAGgtgacacacattcacacagacatGCAAATATATGTTGGTATCAAAGCAGACTCTTTTATAAACAGTACAACTGAactgaaataaaaatgtttaaatccaaaatactttttttctgtttttattaTCTTTCACTGTGGCATAATAATTTCCTGAGACAATACCAAATTGAGGCAAACATACCTAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83323 lncRNA downstream 25625 67643690 ~ 67643964 (-) True G75385
TU83322 lncRNA downstream 25989 67643221 ~ 67643600 (-) True G75384
TU83321 lncRNA downstream 26914 67642459 ~ 67642675 (-) True G75383
TU83298 lncRNA downstream 78505 67590854 ~ 67591084 (-) True G75360
TU83296 lncRNA downstream 84483 67584397 ~ 67585106 (-) True G75358
TU83354 lncRNA upstream 41894 67723624 ~ 67725800 (-) True G75413
TU83367 lncRNA upstream 69737 67751467 ~ 67751829 (-) True G75426
TU83444 lncRNA upstream 215976 67897706 ~ 67952717 (-) True LOC110532597
TU83499 lncRNA upstream 303437 67985167 ~ 67992028 (-) True G75539
TU83578 lncRNA upstream 457065 68138795 ~ 68142480 (-) True G75612
XM_021609108.2 mRNA downstream 27468 67638731 ~ 67642121 (-) True LOC110527672
XM_036989819.1 mRNA downstream 75849 67575054 ~ 67593740 (-) False LOC110527634
XR_005052590.1 mRNA downstream 152774 67515286 ~ 67516815 (-) True LOC118965291
LOC118966711 mRNA downstream 154372 67514760 ~ 67515217 (-) False LOC118966711
XM_021608877.2 mRNA downstream 170361 67446441 ~ 67499228 (-) True ninl
XM_036983393.1 mRNA upstream 44408 67726138 ~ 67793349 (-) False LOC110527713
XM_021609172.2 mRNA upstream 44408 67726138 ~ 67793350 (-) False LOC110527713
XM_021609179.2 mRNA upstream 44408 67726138 ~ 67793350 (-) True LOC110527713
XM_036983411.1 mRNA upstream 115225 67796955 ~ 67801388 (-) False LOC118965293
XM_036983402.1 mRNA upstream 115225 67796955 ~ 67813744 (-) True LOC118965293
TU83185 other downstream 281545 67386509 ~ 67388044 (-) True LOC110527584
TU82368 other downstream 659002 66994682 ~ 67010587 (-) True LOC110527436
TU82292 other downstream 846773 66818844 ~ 66822816 (-) False tjap1
TU78947 other downstream 3288233 64369902 ~ 64381356 (-) True LOC110526867
TU77510 other downstream 4391837 63277208 ~ 63277752 (-) True G70013
TU83574 other upstream 476231 68157961 ~ 68162002 (-) True sdhaf4
TU83653 other upstream 528450 68210180 ~ 68211706 (-) True G75682
TU84158 other upstream 893863 68575593 ~ 68577744 (-) False LOC110527951
TU84152 other upstream 957646 68639376 ~ 68690229 (-) True LOC110527951
TU86507 other upstream 2401110 70082840 ~ 70085385 (-) False LOC118965321

Expression Profile