RNA id: XM_021609172.2


Basic Information

Item Value
RNA id XM_021609172.2
length 3420
RNA type mRNA
GC content 0.52
exon number 13
gene id LOC110527713
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67726138 ~ 67793350 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGGTTGCGCACTCGCTGCAGTGATTGGAAGGTTTTGGTCTGGAATTATCTCTTCTCGCGCAGGACTGGGTATGTGCGCTTGATCAAATGACATAGTCGGAGCCTGAAACATAGCAAGGAGAGCTGGGCCGAGGTAAAAACAGAATTTTTGGAAAATATACACAACTTCAATACGAAATATATAGATATAAGGGAGTGATCGCCCGGAACCAAAAGGATTGGCCACATCTGCTGGAGAAAAAGGTCTCCATGGTGCCATGCTGGATTTCTGTCTCCACCATCAATATGTTCTCTCTCCCCATGGATCTGTATGACCCCCAGCACCAACTCTGGTCTCTCTACAAGCTTCCTCAACATGCCCCTGCACCATGGATCCCCCAGTGAGGGTTTCCAACCGAGGTAGCCTGTGAGAAGGAAGATTTTTGTTTTTGTGCCATCTTACCCATCCTCCCTCACCCACTTGCCTCACCCTCCCTGTACATATTCACCCGTACCTCCACTCCCCCAACGGGGGAAAACTATGCTTCTGCTCTCCCTGCGCTGAACCAGGAAGGGACAGGACGAGGCACACCATCAGAGCCCACAGGGGTGACCACCAGTGACCAACAAGCTCCCACAGAGCGCAGTCCAGCCCACTCAGCAAGTCACTGTGCCAAGATGACAGTGCTTCCCTTTTTCAATGCTGCGGTGGGAGTCTGGATCCTACTGGTGATCAGAGCTGAAGGTATTCAAACTGGTCAGAATCCAGACCACATGCTCCACGGCACCGGGCACAAGCATGAGTCCAGGAAGCCCGGGGACGACACCACGGTGGCCCCAGAGGACGCCGCCCGCTTTCTGAGCTGCTACTGCTCGGGTTACTGTCCAGAGGACCACAAAAATAACACCTGCGAGACGAATGGCCAATGTTTTGCCATCATAGAGGAGGATGAGAACGGAGAAGCTATTCTGACCTCTGGCTGCATGAAGTATGAAGGCTCACATTTTCAATGCAAGGATTCGCCCAGGGCTCAGACCAGGCGAACGATTGAATGCTGCGGGACAGACTTCTGTAATCGGGACCTGCAGCCCACATTACCTCCCCCAATGGACACTGGTTCCTACTTTGGCAGTGCCCACTGGCTGGCGTTCCTTATATCAATGACCGTATGCTGCTGCACTCTCATCTGCAtcacagtagtctgttactacaGGTACAAGTGGCAGACGGAGCGGCAGCAGTACCACCGGGACCTGGAGCAGGACGAGGCCTTCATCCCTGTGGGAGAGTCTCTCAAAGACCTCATCAACCAGTGCCAGTCTTCTGGCAGTGGCTCTGGGCTCCCCCTGCTGGTGCAGCGCACCATTGCCAAGCAAATCCAGATGGTGCGTCAGATCGGCAAGGGGCGCTACGGCGAGGTGTGGCTGGGCCGCTGGCGGGGAGAGAAGGTGGCCGTCAAGGTGTTCTTCACCCGGGAGGAGGCCAGCTGGTTCAGAGAGACCGAGATCTACCAGACAGTCCTCATGAGGCACGAGAACATACTGGGTTTCATAGCGGCAGACATCAAGGGTACCGGGGCCTTCACCCAGCTCTTCCTCATCACAGACTACCACGAGAACGGCTCCCTGTACGACTACCTGAGGTTCACCACGCTGGACACCCAGAGCCTGCTGCGACTGGCCTACTCCGCCGCCTGCGGCCTGTGTCACCTCCACACGGAGATCTACGGCACCCAGGGCAAGCCGGCCATCGCCCACCGAGACCTGAAGAGCAAGAACATCCTGATGAAGAAGAACGGCACCTGCTGCATCGCTGACCTGGGCCTGGCCGTCAAGTTCAACAGTGATACCAACGAGGTAGACGTCCCTCTGAGTACACGGGTGGGGACCCGGAGGTACATGGCCCCAGAGGTGCTGGCCGAGACCCTGAACAAGAACCACTTCCAGGCCTACATCATGGCTGATATATATAGCTACGGCCTCGTCATCTGGGAGATTGCCCGCCGCTGTATAACAGGAGgtATAGTGGAGGATCATCAGCTGCCATACTATGAGATGGTGCCGTCAGACCCGTCCTTCGAGGACATGctggaggtggtgtgtgtgaaaGGGCTGCGGCCCACCGTGTCCAACAGGTGGAACGGTGACGAGtgTCTGAGAACCATGCTGAAGCTGATGTCTGAGTGCTGGGCCCACAACCCCGCCTCACGCCTCACCATCTTACGAGTCAAGAAGACCCTGGCCAAAATGGTGGAATCCCAGGACATCAAAATGTGATATTTTACCCCTACGTACTCAACACAGCCCGATCGAGAGCCCGAACTCCCCAGTGTGTCCCAATGTCATGATGCAGAATATGTCACCTCTGTTCAGGAGGCGGGGGAGGAGAAACagtggatggggggaggggggacccTGCCACAGGGCCTTGGACATTGAGCCTCAACCCTCATGAATCTCTATAACCACAATGGACAGACGCTGCTGCAGAGGTGTTTTTTGACTAAAGGAAACTGTATAGGTTCACTCTCCCGCCTATTCCCTCCCTGACCAGAGGAGTTCTGGGTTGTAGGAAGCAACGTCCTGCGATTTGACGCTTTCTGTGAAAGCCAAAACAGGACATGGTGTGAGGAGGGGGAAGGACATGTGTCTGCTCACATGTTGATGGACAAAGTCATATATTATGTAGGAACTTTAGAGCCACACTTCAAACCAAGACACTGCCCTCGCAATCGTCACCTCCCGCCAATCATGTTCAATTTTTGCCTGTAAATGTTTTATGccaatttttttcccccctcttcaGGACAGTCTTCTCCTGCCATATGGAAATATAACTCTTGACTCTTAAGTAGAGTAATTATGAAATAAGGTACTATAATTATGTGaatttaaatgtaaatgtatattgGATCGATAGATGCTGTGCCTACAAAAAAGAACCATACTGCAATGGTATTCACGTCCAGTGGGCTTCAAATGCGACCTGCTTCAAGAGCTACGAGCAATCCAGACAACCAAGGACATTGTAAGAGGGGATACTCGACTTGCCTTAAATCAACAACTCACTGTGCTTCCTATAACAAAGTTCAACTCAGTAACTTCTCCTGTCACATTTGACATGAAAAGGACAACTGGGGAGAAAAATATGTTCTGCATAATTCTATTCAGAAGGAAATGTGTAAATAGGAAGTCAATCTGTGTCCCGTCCTGTCGCTATGCTTACCCCTTCTTCGTATTTGTTCCTTTGTGTATATACGGTATGTCTTCTGGGAGGAATGTCCAGAACACTAAACATTGAGTCTTGTTCATAGATATTATAAGCTGAATTTCCCTCCAGCTCTTCTCTATTGCTTTTAATTCCATGTTGAGTTATAGATATTCTATGAGTGGCCAACTTTCATATTGCCAAACATCATGTGAGCTCGGCCATTGGACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83354 lncRNA downstream 338 67723624 ~ 67725800 (-) True G75413
TU83323 lncRNA downstream 82174 67643690 ~ 67643964 (-) True G75385
TU83322 lncRNA downstream 82538 67643221 ~ 67643600 (-) True G75384
TU83321 lncRNA downstream 83463 67642459 ~ 67642675 (-) True G75383
TU83298 lncRNA downstream 135054 67590854 ~ 67591084 (-) True G75360
TU83444 lncRNA upstream 104356 67897706 ~ 67952717 (-) True LOC110532597
TU83499 lncRNA upstream 191817 67985167 ~ 67992028 (-) True G75539
TU83578 lncRNA upstream 345445 68138795 ~ 68142480 (-) True G75612
TU83635 lncRNA upstream 412494 68205844 ~ 68206060 (-) True G75664
TU83636 lncRNA upstream 413466 68206816 ~ 68207132 (-) True G75665
XM_021609131.2 mRNA downstream 44363 67669673 ~ 67681775 (-) False LOC110527687
XM_021609138.2 mRNA downstream 44363 67669673 ~ 67681775 (-) False LOC110527687
XM_021609108.2 mRNA downstream 84017 67638731 ~ 67642121 (-) True LOC110527672
XM_036989819.1 mRNA downstream 132398 67575054 ~ 67593740 (-) False LOC110527634
XR_005052590.1 mRNA downstream 209323 67515286 ~ 67516815 (-) True LOC118965291
XM_036983411.1 mRNA upstream 3605 67796955 ~ 67801388 (-) False LOC118965293
XM_036983402.1 mRNA upstream 3605 67796955 ~ 67813744 (-) True LOC118965293
XM_036983425.1 mRNA upstream 20689 67814039 ~ 67856643 (-) False LOC110527725
XM_036983422.1 mRNA upstream 20689 67814039 ~ 67856680 (-) False LOC110527725
XM_036983428.1 mRNA upstream 20689 67814039 ~ 67856681 (-) False LOC110527725
TU83338 other downstream 44408 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other downstream 44408 67669589 ~ 67681730 (-) True LOC110527687
TU83185 other downstream 338094 67386509 ~ 67388044 (-) True LOC110527584
TU82368 other downstream 715551 66994682 ~ 67010587 (-) True LOC110527436
TU82292 other downstream 903322 66818844 ~ 66822816 (-) False tjap1
TU83574 other upstream 364611 68157961 ~ 68162002 (-) True sdhaf4
TU83653 other upstream 416830 68210180 ~ 68211706 (-) True G75682
TU84158 other upstream 782243 68575593 ~ 68577744 (-) False LOC110527951
TU84152 other upstream 846026 68639376 ~ 68690229 (-) True LOC110527951
TU86507 other upstream 2289490 70082840 ~ 70085385 (-) False LOC118965321

Expression Profile