RNA id: XM_036983411.1


Basic Information

Item Value
RNA id XM_036983411.1
length 3218
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC118965293
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67796955 ~ 67813744 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATAGTGTGCTTCCTTCCCTTATTGTCGACTTCAcctttgaaataacacacacttATTCCCCTCCCTCTATTTATAGCTCTAAGGATGATAATCATGCTTTGACAGTGTTCATTTAACCTGCGTTTTAACCTTCCCCTTTCTTACAAATGTATcaacctgtttctctctcctttcaaATGAATTCGGTTGGCGGCTCTGTGAATCTCTCTCACTGCTATAACCGAGGCTCTCTGTtctaacactgtctctctgataccaggctgtctttctttctctctctctctctgtgggtctctgCTATATTAAACTCCCACTAACCTTTACGTTAAACGTGTCTGGGGAAGTGGAGGAGATCCAGCCTATATGGCCAGGCTCCCCCCATGCAAAAAGCCCCTCCCATGTACCAGGGGCAATCCATGTACCAGGGGCTTTGTATTCAGAAGGGACCTTCCATGCAGCAGGGACCTTCCATGTACCAGGGGCCTGCTATGCTGCAGGGACCTCCCATGTACCAAGGGCCTCCAATGCACCAGGGACCACCCATGTACCAGGGGCCCCCCATGCACCAGGCCCCGCCTATGCAGCGACATCCCATGCAGCAGCCTCCTCCCATGCAGCAAAGCTCTATCCAGATCCCTGTGGGCCCTCCTCCACCCAAGGTGGTCAGCACAGCCTGCATTGTGCCAGCTCCAACCCCAGCCACAGCCCCGGCCGCCCCTGAACCCCCCTCCAGCAGGCCACCCTGGATCACGGACAACTCTTTTGCCAACAAGTTTGACCCCAGCAAGAGCACCAGCACCAGCATGAAAGTGCCCGCTCTACCTCAGAGTGCCCCACCAGCACCGGCCTATATCCCACACCCTGGCTCCGCCCACGCCCTTCCCTCTGCCCCAAGCCCTGCCTATAATCCCAGCCCCGCCCCCTACAACCCCGCCCCTGCCCCCTTCCCTCCCATTGCCCGGGGCGTAGCCCAAAGGGCGGAGCGCTTTGCTGCCAACAGCAGCAGAGCACCCCTCTGTGGTGCTTGCAACAACATGATCCGGGGACCCTTCCTGGTGGCCTTGGGTCGCTCCTGGCACCCAGAAGAGTTCAACTGTCACTACTGCCACACATCGCTGGCAGACTGCAGCTTTGTGGAGGAGCAGAACGCAGTGTACTGTGAGAACTGCTACGGAGAGTTCTTTGCCCCCACCTGTGCACGCTGCAACACCAAGATCATGGGGGAGGTGATGCATGCTCTGCGACAGACATGGCACACCACCTGCTTTGTGTGTGCTGCCTGTGGCAATGCCTTTGGAAACAGCCTATTCCACATGGAGGATGGGGAGCCTTACTGCGAGAAAGATTACATTTCACTTTTCAGCACCAAATGCCATGGCTGTGACTTCCCAGTAGAAGCGGGAGACAAGTTTATTGAAGCACTGGGTCATACCTGGCACGATACCTGCTTTGTCTGTGCAGTGTGCAATGTGAACCTGGAGGGCCAGCCCTTCTACTCCAAGAAAGACAAGCCCCTGTGCAAGAAGCACGCTCACGCCATCAACGTGTAAATGCTCCATCTGCAGCCTTATTGGGTGGTGGGCAGGTACTTACGTAGCTATGCCCAAGCCTTGGCAATGAGCTCTGTAGAGGGGGCATTGATCCCAGTGTTAATTATGAAAAATACAAGCTGAAAATGATAGCGGCAGGATTGACCGTCAGTCGTGACAAAATATTAGTTAGGTTTGGGTTTATTAATTTCACTGACAAATGAATTCTAATGTATATTTTATATCAGAGAATTCTGATGTAAACCCTTTGCTATTCCACTGAGTTCCTAGAGGGCCTCAATCCAGGGAGGTTGGAGCTACAGCCTACAGACACATGCAGACTGAGTGGAGTAGCAGGGTTCTTCAGTAAATAAGATGCCTTATTTCACAGCAACACTGTGTGCTTTGTTTTGAATGTAAAACCCCAAATAGCGAAACACAGATAGCTTGCAGTGAATGTAGTAAGACCGTTTTAGGATTGTATACACTAGATTTAACATGATAATGCCTCACACTgtgaactgttacagtatatcATGACACATGTAAGCCTACTAATACTGTTGGATTTCACAGAGCTATTATTATACATTATAGTTTAGTAGGTGATATTTATTGCAACTTTGACCGTTAAAGTATTTATTTACATAGAATCAAATGAAAGCATAACATCCATGGATGTTTATATTGCTGATAAAGCAAAAAAAGTTATATTGCCTTTTGTTGACAGCTGCATGATACAGAGGTTCATAGTATTATATGAAGTACATCACTCAAACTTTTTCATCCTGGATTCATTTGAGATCCAGTCAAAAAACAATACAAAGATAGcaatatgttacattatgatacaGTATTAACATACATATTTAGGGATACAGGTAGAAGATGAGGAAACCTCTATTTATGGGGTAGGGAAGTTAGGAGTTTTGGAATGTGTCTCATAAACGTGGAAATCGAGGAAGTACCCTGGATCTTTTTACAGCATGTAAGTGAGACGAGCACTGGCCTGGGGtcttacaaatacattttacgCAGCAAAAGTCTATGCATCCTCTGTATGAAGCGCTACAATTAAACAAGAATTTATAGGAAATATCTGTCAAGGCCAAAAACAGCCATTCACAATCATTTCGCTCTCACTAGCACACACCTTAAAGGTCAGTTGTGACCTTGTGCTTGTGTACAGATGCTTAACTGAGTTTATTTTGTACATCTGTGTattttctgtgtttgtgtatgtatgcatgcaagAGTTTGTACATGATTGTCAGTGCATGTCTACTGAGGCAACATCAGTATTAGTTACTGTATGTATTTGTGCCACTGGAATAGCAAGGTTTATTTTGATTTGACATAACTCTGAGAACACTAGACTAAGTACCTTTGATATGCGTATGTATGTAGATCAACGTGTAAGGAAAGCATAGTCAGTGCCAGTTCAGAATAAACCTTACATGGTACCATTGAGGGAAATGAAAGAAGACTTGAATTGTTGCTAAATAGTTGTTTAAGGAACTCGTTTTTTTAAAGTTCAGCATATTGAAACTAGTTATATAGTTTCCAACCACTAGAGTGCAACAGAGTGTTGAAACCATGCTGGCTACTTGGTATGCCTCACACGCTAGTCACTATTTATACATCGTACACTCACTGTATGTTCCCTTGGCCCCACCCCAGCAAACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83367 lncRNA downstream 45126 67751467 ~ 67751829 (-) True G75426
TU83354 lncRNA downstream 71155 67723624 ~ 67725800 (-) True G75413
TU83323 lncRNA downstream 152991 67643690 ~ 67643964 (-) True G75385
TU83322 lncRNA downstream 153355 67643221 ~ 67643600 (-) True G75384
TU83321 lncRNA downstream 154280 67642459 ~ 67642675 (-) True G75383
TU83444 lncRNA upstream 96318 67897706 ~ 67952717 (-) True LOC110532597
TU83499 lncRNA upstream 183779 67985167 ~ 67992028 (-) True G75539
TU83578 lncRNA upstream 337407 68138795 ~ 68142480 (-) True G75612
TU83635 lncRNA upstream 404456 68205844 ~ 68206060 (-) True G75664
TU83636 lncRNA upstream 405428 68206816 ~ 68207132 (-) True G75665
XM_021609172.2 mRNA downstream 3605 67726138 ~ 67793350 (-) False LOC110527713
XM_021609179.2 mRNA downstream 3605 67726138 ~ 67793350 (-) True LOC110527713
XM_036983393.1 mRNA downstream 3606 67726138 ~ 67793349 (-) False LOC110527713
XM_021609131.2 mRNA downstream 115180 67669673 ~ 67681775 (-) False LOC110527687
XM_021609138.2 mRNA downstream 115180 67669673 ~ 67681775 (-) False LOC110527687
XM_036983425.1 mRNA upstream 12651 67814039 ~ 67856643 (-) False LOC110527725
XM_036983422.1 mRNA upstream 12651 67814039 ~ 67856680 (-) False LOC110527725
XM_036983428.1 mRNA upstream 12651 67814039 ~ 67856681 (-) False LOC110527725
XM_036983420.1 mRNA upstream 12651 67814039 ~ 67856689 (-) True LOC110527725
XM_036983431.1 mRNA upstream 71571 67872959 ~ 67899973 (-) True LOC110532592
TU83338 other downstream 115225 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other downstream 115225 67669589 ~ 67681730 (-) True LOC110527687
TU83185 other downstream 408911 67386509 ~ 67388044 (-) True LOC110527584
TU82368 other downstream 786368 66994682 ~ 67010587 (-) True LOC110527436
TU82292 other downstream 974139 66818844 ~ 66822816 (-) False tjap1
TU83574 other upstream 356573 68157961 ~ 68162002 (-) True sdhaf4
TU83653 other upstream 408792 68210180 ~ 68211706 (-) True G75682
TU84158 other upstream 774205 68575593 ~ 68577744 (-) False LOC110527951
TU84152 other upstream 837988 68639376 ~ 68690229 (-) True LOC110527951
TU86507 other upstream 2281452 70082840 ~ 70085385 (-) False LOC118965321

Expression Profile