RNA id: XM_036983420.1


Basic Information

Item Value
RNA id XM_036983420.1
length 1548
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC110527725
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67814039 ~ 67856689 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGACCTCTCTTCCTCTGGCTCTCtactctcttctgtctctctttctgtcattaTTTAAAAAGGGTTAGGCGTGAATTACATATTTGTCTGTGGCTGAACTGGGTTGGTTTTTAATTTGCTGTGCTCCCAGTCTCATTTGACATTTCGGGGAGATATTGTATCTTTTTTTTTGTCCTCACCtgtacttttctttttttttgcaccTTTTTTTCTGCTTTCAGAGGCTACTTGGCTCCTGCCCCACCCCCTCTACCTCCATTTTTGGACACCACTTTGCAGGAAGATTAAACCACACAAGCAATCAAAGCCTTTGGAAGAATGAGTAGCTACAATATTTCTCTGAGTGGGCCGGCCCCATGGGGCTTCCGATTGCAGGGAGGCAAGGACTTCAACATGCCCCTGACCATCTCCAGGATCACCCCAGGGAGTAAGGCACAGCAGGGAAACCTGATCCAGGGTGACATCATCGTGGCCATCGACGGGGTCAGCACTGAAGGCATGACCCACCTAGAGGCCCAGAACAAGATCAAGTCTGCCAGCTTCAACCTGGCCCTCACCATGCAGAaGTCAAAGCGCCCATTTCCACTTTCCACATCCACCCAAAGAATGGATTCTCCCATGCAACAGATCCCTCACCAGAAGGCTCAAACTACCAAAATAAATGGCGGCCTCTCGGCCTGCAATACCTCCTCCGTGTCACTAGAGGCGTCTGGCGAGAAAAACTCCTACTCGGGGTCGCCCACCAAGAGGCAAACTCCAAGCCCTGGGGGCAAGACGACCCCCACAAAGAAGgcacagtataacactcctattGGGCTGTACTCAGCTGAGACCCTGCAAGAGATGGCTCAGCTCCAGGAGAGCCACAGAGGAAAGGGCTCTGCAGCAGGCCTCTCAGTGGGTTCGCTCCCAGTAAAAGATGCTCAGGTAGACAGTGCCTCCCCAGTTTATCAGGCTGTGATCAAGACTGCAGACAGGGACACGGAGTTGAATGACTGGGCCCGCAGCTCCTCCCAGGTGCAGTCCAAGTCCTTCCGCCTCCTCGCCCACATCACGGGAACGGAGTTCATGCAAGACCCAGATGTGGAACATCTGAGGAAATCAAGGGAAAAGTTTGACACGGAATTTAAAGGTCCACGTTTTGCCAAATTGAAAAATTGGCACAATGGCCTGTCTGCTCAAATCCTAAACCTGCCAGAAAAAGCCGTGGTTTAAAATATGTGTCAGACCGAACGTAACTGTAGCAACCAGAGAAGTGCAGAGCAGGTAAAACAGTTGGACTGTGAGTGAGGAGAAGGTCAGGCTAAAGATACTGGAATGTGAGTTCGTGGAAAGAGGGTTGTTCAATACTTGTTGATCACATGTTGTAGTGAAGATTTTAGCCCAATGTCATATTCCCTCCTTATTTTGGCTATTTAAGTTGATGCTAGCTTTCTAAAGTAATTGCAGCTGTATAAGAAAGTTGTATTGTATTTCAACCGTAAATTATCACTATTTGAGTTTGACATTGTGATAAGTATGAATAAAAACAATGCcactaaataaaa

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0001756 somitogenesis biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83367 lncRNA downstream 62210 67751467 ~ 67751829 (-) True G75426
TU83354 lncRNA downstream 88239 67723624 ~ 67725800 (-) True G75413
TU83323 lncRNA downstream 170075 67643690 ~ 67643964 (-) True G75385
TU83322 lncRNA downstream 170439 67643221 ~ 67643600 (-) True G75384
TU83321 lncRNA downstream 171364 67642459 ~ 67642675 (-) True G75383
TU83444 lncRNA upstream 41017 67897706 ~ 67952717 (-) True LOC110532597
TU83499 lncRNA upstream 128478 67985167 ~ 67992028 (-) True G75539
TU83578 lncRNA upstream 282106 68138795 ~ 68142480 (-) True G75612
TU83635 lncRNA upstream 349155 68205844 ~ 68206060 (-) True G75664
TU83636 lncRNA upstream 350127 68206816 ~ 68207132 (-) True G75665
XM_036983402.1 mRNA downstream 295 67796955 ~ 67813744 (-) True LOC118965293
XM_036983411.1 mRNA downstream 12651 67796955 ~ 67801388 (-) False LOC118965293
XM_021609172.2 mRNA downstream 20689 67726138 ~ 67793350 (-) False LOC110527713
XM_021609179.2 mRNA downstream 20689 67726138 ~ 67793350 (-) True LOC110527713
XM_036983393.1 mRNA downstream 20690 67726138 ~ 67793349 (-) False LOC110527713
XM_036983431.1 mRNA upstream 16270 67872959 ~ 67899973 (-) True LOC110532592
XM_021616635.2 mRNA upstream 92296 67948985 ~ 67953556 (-) False LOC110532597
XM_036983461.1 mRNA upstream 105079 67961768 ~ 68007612 (-) False LOC110527734
XM_036983438.1 mRNA upstream 105079 67961768 ~ 68046305 (-) False LOC110527734
XM_036983455.1 mRNA upstream 105079 67961768 ~ 68046306 (-) False LOC110527734
TU83338 other downstream 132309 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other downstream 132309 67669589 ~ 67681730 (-) True LOC110527687
TU83185 other downstream 425995 67386509 ~ 67388044 (-) True LOC110527584
TU82368 other downstream 803452 66994682 ~ 67010587 (-) True LOC110527436
TU82292 other downstream 991223 66818844 ~ 66822816 (-) False tjap1
TU83574 other upstream 301272 68157961 ~ 68162002 (-) True sdhaf4
TU83653 other upstream 353491 68210180 ~ 68211706 (-) True G75682
TU84158 other upstream 718904 68575593 ~ 68577744 (-) False LOC110527951
TU84152 other upstream 782687 68639376 ~ 68690229 (-) True LOC110527951
TU86507 other upstream 2226151 70082840 ~ 70085385 (-) False LOC118965321

Expression Profile