RNA id: XM_036983431.1


Basic Information

Item Value
RNA id XM_036983431.1
length 2435
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC110532592
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67872959 ~ 67899973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGTGCACGAGGCCCCTCGTCACCCCTTCCCCACTGTGGATGTACCTGACCACGCCCATTATACTATAGGGGCCGTCATCCTGGCTATCGGCATCACCGGCATGGTGGGCAACTTCCTGGTTATCTATGCCTTCAGCAGGAGCAGGTCACTGAGGACTCCAGCCAACATGTTCATCATTAACCTGGCCATCACTGACTTCATGATGTGCATCACACAGGCACCCATCTTCTTCACCACCTCCATTCACAGGAGATGGATCTTCGGGGAGAAAGGCTGTGAGCTCTATGCATTCTGCGGGGCTCTATTTGGGATCTGCTCTATGATCACTCTGACGGTGATAGCAGTGGACCGCTACTTTGTGATCACGCGTCCGTTGGCCTCCATTGGGGTGCTCTCCAAGAAACGAGCCCTGCTCGTCCTCATGGCTGCCTGGGCCTACTCACTGGGGTGGAGCCTGCCCCCTTTCTTCGGCTGGAgTGCCTATGTTCCTGAGGGTCTGTTGACCTCCTGTACATGGGACTATGTGACCTTTACCCCGTCCGTGCGTGCCTACACCATGCTGCTCTTCACCTTTGTCTTCTTCATCCCCCTGATCATCATCATGTACTGCTACTTCTTCATCTTCAGAGCCATACGCACAACTAACAAggCTGTAACCAAGATCAACGGCACTGGGAGCACCAGAGACTCCATTAAGAGTTTCCATCGGCTGAAGAATGAGTGGAAGATGGCTAAGATCGCTCTTATTGTCATCCTCCTCTATGTCATCTCTTGGTCCCCCTACTCTGCTGTTGCCCTGACCGCATTTTCAGGGTATACAGATTTTCTGACCCCCTACATGAACTCAGTACCTGCTGTGATCGCCAAGGCTTCAGCCATTCACAACCCCATCATCTATGCCATCACCCACCCCAAGTACAGGATGGCCATAGCCAAGTACATCCCATGCCTGGGGTTTTTGCTGTGTGTACGTAGACGCGACCTGCAATCCACCAACAGCAGTTTCATGTCCACCCGACGATCCACTGTCACCAGCCAGACATCCGACATCGGCGACCGCTTACACCGCACCAGCACTGTCAAGTCCCGCCTCTCTTCCGCCTCCGACAGCGAATCGGCCTGGACAGATACTGAGGCTGACCTCTCCAGTATGGGCTCCTGGCCGGCTAGCCGCCAGGTGTCCTGTGATATCAGTAAGGACACCACCGAGCTCCCACACTTCAAGCCCTCCAGCTCCAAGTCCAAGATGAAGATCCACGACTCTGGTATCTTTGAGAAGAGCTCTAATGCCATGGACAACATCTCCATGACAGGCGTGGGCCACAGTGACCACGGCTTCCCTCCAAGTGCAGGTGATTCGCCAGAAGGCACCATAACTAGAGGAATGATTGGCCGGATTCCCAGCATCGTCATCACCTCTGAGACCAGCCCCTTCTTACCTGTCCTTAAGGCCAGTTCTCATGGTTCCAGTAGTAGGCCAGCCAGTGGCAGTGTAGATGTAGGATCTGTAACCAAGGGGCCACGGGAGTGTCCAGCAGGGGTCAACACTTCCCTCTAACAGTGATGGCTCTACACCACTCATCTGATCACAACCACCCAGTTTTTATGTACAGCACTTGATTATTTATAGTAAATGCCAGGGTCTGTACTCAACATGCAACTTTTCTAAAAGTCAAGTTAACCCCCATGTGAATATGTTCTTTATTAAaacgtttttgttttgttgctttGTTAATGTGCAAGGTGACAAAGTACAGAATTGCAGTTTGGTATCTACTGTAAGCAAATGGGATAGGTTGTGTTGTCTGCTAAACTTTCACCAGGTCATCTGAGTGAGCTACAATCATACAAGAAGCCCAGCCATTTCAAATCCCTTTCAAACATTTCCCCTAGCTCAGGTCCCCTCCTCTTAGAGCTGCAAGAGGAAGATGGCTGAAACAGATGATATAGAACTGTTGTGTGTAGTAATGCATTTGTGACTGAAACAGGCAGCACTGATCTGAGCTGGAGATGGCCATCTGAGtgatctacactatatatacaaaagtatgtggacaccccttcaaattaatggattcggctatttcagccacacccattgctgacaggcgTATAAAATCAAGGACACAGCCATGCAATTCCATAGGCAAACATTAGCACTAGAATGGCcttacaaactgcctctggaagcaacgtcagaacAAGAACTGTtgggagattcatgaaatgggtttccatggcagagcaggagcacaaaagcctaagatcaccatgctcaatgccaagcgtcggctggaggggtgtaaagctgtGGTGTAAAGAGTGGTGTAAAGAAGGCccttcttgtttcagcatgacaatgcccctgtgtacaaagcgaggtccatacagaaatggtttgtcaagatttgTGTGGAAGaacactgacctcaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04255 OPN4, Rh2_7; r-opsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83367 lncRNA downstream 121130 67751467 ~ 67751829 (-) True G75426
TU83354 lncRNA downstream 147159 67723624 ~ 67725800 (-) True G75413
TU83323 lncRNA downstream 228995 67643690 ~ 67643964 (-) True G75385
TU83322 lncRNA downstream 229359 67643221 ~ 67643600 (-) True G75384
TU83321 lncRNA downstream 230284 67642459 ~ 67642675 (-) True G75383
TU83499 lncRNA upstream 85194 67985167 ~ 67992028 (-) True G75539
TU83578 lncRNA upstream 238822 68138795 ~ 68142480 (-) True G75612
TU83635 lncRNA upstream 305871 68205844 ~ 68206060 (-) True G75664
TU83636 lncRNA upstream 306843 68206816 ~ 68207132 (-) True G75665
TU83746 lncRNA upstream 332259 68232232 ~ 68285627 (-) True G75764
XM_036983420.1 mRNA downstream 16270 67814039 ~ 67856689 (-) True LOC110527725
XM_036983428.1 mRNA downstream 16278 67814039 ~ 67856681 (-) False LOC110527725
XM_036983422.1 mRNA downstream 16279 67814039 ~ 67856680 (-) False LOC110527725
XM_036983425.1 mRNA downstream 16316 67814039 ~ 67856643 (-) False LOC110527725
XM_036983402.1 mRNA downstream 59215 67796955 ~ 67813744 (-) True LOC118965293
XM_021616635.2 mRNA upstream 49012 67948985 ~ 67953556 (-) False LOC110532597
XM_036983461.1 mRNA upstream 61795 67961768 ~ 68007612 (-) False LOC110527734
XM_036983438.1 mRNA upstream 61795 67961768 ~ 68046305 (-) False LOC110527734
XM_036983455.1 mRNA upstream 61795 67961768 ~ 68046306 (-) False LOC110527734
XM_036983442.1 mRNA upstream 61795 67961768 ~ 68054497 (-) False LOC110527734
TU83338 other downstream 191229 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other downstream 191229 67669589 ~ 67681730 (-) True LOC110527687
TU83185 other downstream 484915 67386509 ~ 67388044 (-) True LOC110527584
TU82368 other downstream 862372 66994682 ~ 67010587 (-) True LOC110527436
TU82292 other downstream 1050143 66818844 ~ 66822816 (-) False tjap1
TU83574 other upstream 257988 68157961 ~ 68162002 (-) True sdhaf4
TU83653 other upstream 310207 68210180 ~ 68211706 (-) True G75682
TU84158 other upstream 675620 68575593 ~ 68577744 (-) False LOC110527951
TU84152 other upstream 739403 68639376 ~ 68690229 (-) True LOC110527951
TU86507 other upstream 2182867 70082840 ~ 70085385 (-) False LOC118965321

Expression Profile