RNA id: XM_021609269.2


Basic Information

Item Value
RNA id XM_021609269.2
length 1783
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110527765
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68078150 ~ 68086116 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccCCCCTCAAAGATCTGCCATCCAAGCTCAGGGTGGATTTCACACTCCCTGGGATCTGAGTCCAGCCACAGGTCTGAGGCACCCTGGGATTTGTAAACTTCTGATTAAGATTAACCTGCAGCCTTCATCTCCTACTGGTATTACTAGACCTCCTTGAACATAAGGATTTAAAAAACTGGTCTGCAGTCATGCCTCATGGAACACCTGCCCCACCTAACAAGCGGAAAAAGCCCTCTAAGATCATCACTGACCTGTCACATGTCACTCAAGATGAGTATGAGTCAGAGCCTGAGGCGTCAGAGTTTGACCTGGGGACGAAGATCAAGACTCCCAAGGACACCATGCTGGAAGAGCTGAACCTCTTCACCAACAAGGGCTCCAAGATGTTCCAGAGGAGGCAGAAGCGTGTGGAGAAGTTCATATACGAGAATAACCCTGACCTCTTCAGCAGCGAGTCTATGGAGAACTTCCAGAAGTTGGTCCCCAGCCTGGGTGGCACAATGATGTTGGACGCTACTGGCCACATGGTGGAGAAGAAGGCAGGCCCTCCTGTGCCCCCTCCCAAACCAGGCAAAGATGGgcatggttatggtcatggtcagGGACATGAGCATGGTCATGAGCATGGACACCATGGACATCATGATGATGTTGCTCCAGGAGAACATGGTCATGGTAGTCATGGAGTAGAGGTGGCCTTAGACAAGGCCAAGAAGAGGCATGATTATGTCCCCTCATACGTATCACCATGGGAAAAGGCCATGAAGGGCAACCAGGAGCTGACATCCAGCATGAGATATCATATGCCAGGCCCCCATGCCCACCATGATCTGCCCAAGTTCAAGTCCTTCAACAGGAGTGCTACACCGTTTGGGGGCTTTGATAAGGCCTCTCAGCTCATGACCTTCCAGCTGCCAGACACCCATGAGGTGGCCCATGATGAGCCTGAACTGGCTGTAGTATACCAGCATGAGATTGGCGCTCGACCCTCCTTCAACCGCACTCCTATAGGCTGGGTGGGGAGCGGTGAGCCCAGCAGCATCCACATCGAGTTGGACACCATGCCCTTCGATGGGGAGACTGACGACCTGTGAATAGCATGCCCCACAGACCCAGATGTGCAGATAAAGACCACGCACAAATATATACAATTACATAAACAAAAACCATCACTTTTTTTTGAAAGGTTTTGAATGCAGTCAGCTTTTCCTTGGGTTGAATTAATTAATAGGAAAGTGTGTATGAAACGAACCACGTAGCTCAATATTGGGCTCTtaatttagacagagagagacagagaaggagacaaaGTAAACACAATAGACTACCATAACTCTGATTTATGCTTACACTTATTTTTTCATGATGATTCATTTAAGGAGCATAGTATATTGTGCAATCACACTACAAGTATGTAGCTTATTCACAAAGCAGCAACATAACATATGTCCATGAGGAGAACAGGTAAACTCAACGGAGAGTTTGAGTATTGTTTAGCTTTTCAGCATGTTGATGTGACTCATTGCTCATCAGGACAGCCACACGTTGTTCATTTAGCTTCTAGCCTTCTACCATCATGGCTTttactgtatttctgtgttttttcCTGTGTTTCTATGCCGCTTTCACATTTGACAGCTTTGTCAAGCCCCTGCAAATCCAAACCATCCTAGGACGCATGCAGTAAGCATGAGGTGAGGTGTGTTCATTTCTGTTGAGTGATAGAGATGATGTTCTACTGCATCACCCACATTTTCTCCTTAATAAACTTTTTCCAATTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83499 lncRNA downstream 86122 67985167 ~ 67992028 (-) True G75539
TU83444 lncRNA downstream 125433 67897706 ~ 67952717 (-) True LOC110532597
TU83367 lncRNA downstream 326321 67751467 ~ 67751829 (-) True G75426
TU83354 lncRNA downstream 352350 67723624 ~ 67725800 (-) True G75413
TU83323 lncRNA downstream 434186 67643690 ~ 67643964 (-) True G75385
TU83578 lncRNA upstream 52679 68138795 ~ 68142480 (-) True G75612
TU83635 lncRNA upstream 119728 68205844 ~ 68206060 (-) True G75664
TU83636 lncRNA upstream 120700 68206816 ~ 68207132 (-) True G75665
TU83746 lncRNA upstream 146116 68232232 ~ 68285627 (-) True G75764
TU83765 lncRNA upstream 171489 68257605 ~ 68280269 (-) True G75782
XM_036983445.1 mRNA downstream 345 67961768 ~ 68077805 (-) False LOC110527734
XM_036983442.1 mRNA downstream 23653 67961768 ~ 68054497 (-) False LOC110527734
XM_036983467.1 mRNA downstream 31842 67964595 ~ 68046308 (-) False LOC110527734
XM_021609213.2 mRNA downstream 31842 67972870 ~ 68046308 (-) True LOC110527734
XM_036983455.1 mRNA downstream 31844 67961768 ~ 68046306 (-) False LOC110527734
XM_036983494.1 mRNA upstream 18012 68104128 ~ 68117425 (-) False LOC110527775
XM_036983491.1 mRNA upstream 18012 68104128 ~ 68117689 (-) True LOC110527775
XM_036983531.1 mRNA upstream 56836 68142952 ~ 68151135 (-) False LOC110527795
XM_021609315.2 mRNA upstream 56836 68142952 ~ 68151963 (-) False LOC110527795
XM_021609340.2 mRNA upstream 56836 68142952 ~ 68151963 (-) False LOC110527795
TU83338 other downstream 396420 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other downstream 396420 67669589 ~ 67681730 (-) True LOC110527687
TU83185 other downstream 690106 67386509 ~ 67388044 (-) True LOC110527584
TU82368 other downstream 1067563 66994682 ~ 67010587 (-) True LOC110527436
TU82292 other downstream 1255334 66818844 ~ 66822816 (-) False tjap1
TU83574 other upstream 71845 68157961 ~ 68162002 (-) True sdhaf4
TU83653 other upstream 124064 68210180 ~ 68211706 (-) True G75682
TU84158 other upstream 489477 68575593 ~ 68577744 (-) False LOC110527951
TU84152 other upstream 553260 68639376 ~ 68690229 (-) True LOC110527951
TU86507 other upstream 1996724 70082840 ~ 70085385 (-) False LOC118965321

Expression Profile