RNA id: XM_036983491.1


Basic Information

Item Value
RNA id XM_036983491.1
length 4165
RNA type mRNA
GC content 0.60
exon number 4
gene id LOC110527775
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68104128 ~ 68117689 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCCCAGCCTGCAACCCTATCAGCAGTGCCCATACttagggtgtgggtgggcatgtgtgtgtgtcattgaaagagcgtgtgtatgtgtgcgtgcccAGGTGCTAGAGTAGTGGGTTGAGAGAAGTCAACTCCATGACATTATAGCTGAAGGAGAGCGAACAGAGCTCTCTGAGGGGGCCCTGACAACTATGGAGTAAACGCACTGAGGGCCCCCCCAGAAAGACAAAAAGACAGACAAACGGACAGAAAAACAAAAAAGGAGAACGTATCACACAATAATGGTGGCAGAAGAGGTTATAATCACCTTGTCTGGTGGAGCACCATGGGGCTTTCGTCTCCAGGGGGGCGCGGAGCACCAGAAACCACTTCAGGTGGCCAAGGTGCGTAAGCGCAGTAAGGCGTGCAGGGCAGGACTGCGGGAGGGCGATGAGCTGGTGTCCATCAACGAGCAGCCATGTGGAAGTCTGTCCCACTCCCAGGCCATGACCATAATCGACAGCTCCCCAGGAATATTACACATCCGGGTCAAGAGGGCACCGGCAGGCTTCCAGTCTGTGGTGCTGTTGACCCGCGCCCCATCCCCTCGCATTGACAAAGAGTACCGAGCTGCCCTGCGTGCCATGTCCCCCTCCTCCAGACCCCACCACATAGCAGCTGTCAGGGAGGTCCCCCATGGCAggtcctctgtcctgtcccccATGGGGCGCAGCGGCCTCACCTCGCCCCCAGGCAGTGAGGCCTACTACGGGGAGACAGACAGCGACGCAGATGTGGCAGCCCACGAGAGGCAGAGGAGGCAGAAGCGCAGAAGTCCCAGCAACTTACCCGGCAAAGCCTCTGGCAGAGCCTCCCAGGAGGGAGGCGAGACCTCAGAGTTTAGCGGCTATGACAGCGCCCCAGATGGCCAGCTCTACCCAGGGCTCCAGGACCACGGGCTAATGGATGGCCGAGGAGCGGGGGAAGGCTTGCCGGGGGTGGCCCGCAAGGAGGTGATTTACCAGCCCCCTCCAGGGATGTGGTCCTCCCAGACCTCCACAGAGACCTCCTCCATCATCTCCTCTGTTGAGGACCAGGGCCCAGGAAGGGACGGAGTGGCGGAGGAGGACAGTGGCTTCCAGGAGCCCTCCAACGTGGTCCCACTGGTTTCCCCCGAGAGGGCCAAGGGGGCCATGCAGCTGAGCTCCCGCAGGCAGCTGGTGCCCATGGTGGGGCCCATAGACACCCCTCTGGATGAGGAGCTCAGTGTCACCTACATGGACAAGGCCAAGCAAGCCAAACTGAACCGGGGTGACACGGTTCAAGACAAACAGGTGAAGGAGGCCAGAACCAAGTGCCGCTCTATCGCCTCCCTTCTGACAGACGCTCCCAACCCCCACTCCAAGGGCGTGCTGATGTTCAAGAAGAGGCGGCAGCGCTCCAAGAAGTACACGCTGACCAGCTTCGGCAGCGTGGACGAGGACATGCAGCAAGATTCCCAGGAGGAAGATGGTCTTTTCCCAGGAAGCGAGTCGGAGTTTGATGAGGATGGCTTCTCAGCCGCCCCCGACACCACCTGGGACAGTGACTACTTGGATGCACTGGAGAAGAGGGCGACCGCGGGGGGAGAGCGAGGGGATGGGACAGAAGATGCCCCCAGTCCCGGCCTGAGTGACATCTCTGGGAAGGGCGCCCAGCTGTTTGAGCAGCAAAGGAAGAGGGCGGCCGAGCACGCCAAGAAGGTGGCTGCCACCCAGCCTCAGGTGCCGCCCCAGCCTCAGATAAAGACCCAACCCCTGAACCAACCACAGATCCAGGAGCAGCCTCAGCCATATGCACAGAGCCAGCCCCAGCCAGAGACACAACCACAGATGTACCAACCTCAGCAACCTGTGGCACCACCGCCCCCTGTAGCCTTCCAGGAGGAGACTCCGTCTGTGGCAGAGAGGGCTATGGCACCAGCCCCAGCTGCTCCTACTGCCTACAGTATGGCTAACGGAGATGTAGCCTACTCTGCAGTGAGCACAGCTAGTGTGCTAATGTCACCCCCGACTGTGGCACCCAAACCAATCACCGGCCAAGTGTCCATCTCAACCATACCTCCGCCCCAAACACCACTGCCAGAACTCTCCTCCAGCTCTGTGGTCAACAGAACCGCCCGCCCCTTCAACCCAGGGTTTGTGACTAACCGAGCCGCCACCGCTCCTGTTGTGTTCCGCCCCGTCATCACCAAAAGGGCCCAGCGCCCAGCAACCTCTGTGTCTATTGTAGGACCTCCCTTCTCCACCACATCAGAGCTGCCTGCAAGTGGCTGTCCTTCCTTCTTCTCACCCCCGTCCTCTGTGTCCGGAGGACCGTTCTCCACCCCATCCTCAGCACCGGCCACTCATCCCCGTCCTGCCTTTTCTGTGGAGAGCCTGGCAGAACCACCCATGCTCTCTGTTCCGCAGGCTTCCTTCACAGCCATACCTCCACCCCCAGCACAATTCTCAGGTGGCCCCATACCCCCACCTCCAGTCTCGCTTGCCTCCGTACCACCACCCCCAGTATCATTTGCCAACGTACCCTCAATTCCACCCCCATCGCCATTCTCAGGTGCTCCCATACCCCAAGCCTCGGTCTCGGTGGCCCAATCATCCCCAGCTCCACTGTCATTTGACCCCATACCCCAACCTCAAGTTTATTTTGCCCACAAGCCCCAAGCTTCAGTCTCAGTTGTCCCACTCCCACCCTCCACAGCTCCTGCAGCTGCACCCAGATCCCCCATGTCCAATGTCCCACCTCTCCCTGGTGGTCGTACCGGTTACCTCCTGGAGGCTCGTCGGCGCAGCGGCAGGAGGCCCATGTTCCGAGTCCCTGATGAGAAGAAGAACTCTCCCAACCCTGACCTGCTGAACATGGTGCAGAACCTGGATGACAGGCCCCACTACGGAAGCAATTCAGGGAGTATGATGGGCTTTGACTCAGGCACAGAGGAAGACCAGGCTGCTGAAGCCGGCCGGGGCAGGATGCCTCCACCGGTGGCCCCCAAACCCAGGGTCATCCACGAGGCCCCCCAGATTCCCCAGGCGGAGGGGAAGGGGGCTCAGCTGTTTGCCCGCAGGCAGAGCCGCATGGACCGGTTTGTGGTAGACACCCCACTAGAGACCGCCTACCAGCAGGAGGTCACCTACCCAGGGGCCGAGTCCCAGTATGCCCCCAACCCCAATATCAACTCACAGTGGAAGTTATCCCCCAACATCCGTGCCCCCCCACCCATTGGTTACAACCCGTTGCTAGCCCCCTCCTGCCCTGTGGGGCCACAGAGAGATACAGGCAGGTCTGACAGGGGGGACTGGGGAAGCAGACGGGGGATAGCCTCTCATAGGGAGGGAATCAAAGCTCTGGATTTCATGAGAAGGCAGCCTTACCAGCTCAACTCAGCTATGTTCGGGGGTAGTGTTGCCAACCTGTCGGCGATGCCCTCATACCAGGACCAGAGGCAGCAGCAGGGAGGGTATACTACCATGGTGGGCAGCACCATGACTCCTCCCAGACAGATCCCAGTCAAGGCGGCCCGTGTGTACGAGATCAAACGCTTCTCAACACCCACGCCCATGTCATCCCGGTGTTTGGCCCCCACTGTGATCGCCCCTCGTTCAGCCACAACGCTGGGTGAGCGCCTGACCCGCTCCGACATGATCTCCCCaacccctgctcctctctccccaccccctgcccCTGTCTTTTCCCCAGCCCCGGTCTCTGCCCCACATCCCGCCCTTGCTCCTACCTATTCAGGGGGCCTGCCCGGGCTGCCCAGAATCAATGCCACCCCTgtccccaaccccaaccccatcccCCACCCATCACCCTATCCTGGGGTGTCTTACAGTGGGCTCCAAGGTACTAAGCAGTTTCAGAGTGCCCCTGATCTGAGTTTCCTTGCTAACCTCCCCCCTCCTTTCAGGGCAAATGCCATGCAGGCACCCAAACCCCGCTTCATCGCCACCAAGGTGGGTGTCCAGCCACGTGTGTGGAGACCAGGTGCCATGTAAACGGGAGTGGGAGACCATGTCTGAGAACTGGACACATCCCAgccctataaaaaaaatatataaatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83499 lncRNA downstream 112100 67985167 ~ 67992028 (-) True G75539
TU83444 lncRNA downstream 151411 67897706 ~ 67952717 (-) True LOC110532597
TU83367 lncRNA downstream 352299 67751467 ~ 67751829 (-) True G75426
TU83354 lncRNA downstream 378328 67723624 ~ 67725800 (-) True G75413
TU83323 lncRNA downstream 460164 67643690 ~ 67643964 (-) True G75385
TU83578 lncRNA upstream 21106 68138795 ~ 68142480 (-) True G75612
TU83635 lncRNA upstream 88155 68205844 ~ 68206060 (-) True G75664
TU83636 lncRNA upstream 89127 68206816 ~ 68207132 (-) True G75665
TU83746 lncRNA upstream 114543 68232232 ~ 68285627 (-) True G75764
TU83765 lncRNA upstream 139916 68257605 ~ 68280269 (-) True G75782
XM_021609269.2 mRNA downstream 18012 68078150 ~ 68086116 (-) True LOC110527765
XM_036983485.1 mRNA downstream 18837 68078150 ~ 68085291 (-) False LOC110527765
XM_036983445.1 mRNA downstream 26323 67961768 ~ 68077805 (-) False LOC110527734
XM_036983531.1 mRNA upstream 25263 68142952 ~ 68151135 (-) False LOC110527795
XM_021609315.2 mRNA upstream 25263 68142952 ~ 68151963 (-) False LOC110527795
XM_021609340.2 mRNA upstream 25263 68142952 ~ 68151963 (-) False LOC110527795
XM_021609322.2 mRNA upstream 25263 68142952 ~ 68152016 (-) True LOC110527795
XM_021609351.2 mRNA upstream 40211 68157900 ~ 68162024 (-) False sdhaf4
TU83338 other downstream 422398 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other downstream 422398 67669589 ~ 67681730 (-) True LOC110527687
TU83185 other downstream 716084 67386509 ~ 67388044 (-) True LOC110527584
TU82368 other downstream 1093541 66994682 ~ 67010587 (-) True LOC110527436
TU82292 other downstream 1281312 66818844 ~ 66822816 (-) False tjap1
TU83574 other upstream 40272 68157961 ~ 68162002 (-) True sdhaf4
TU83653 other upstream 92491 68210180 ~ 68211706 (-) True G75682
TU84158 other upstream 457904 68575593 ~ 68577744 (-) False LOC110527951
TU84152 other upstream 521687 68639376 ~ 68690229 (-) True LOC110527951
TU86507 other upstream 1965151 70082840 ~ 70085385 (-) False LOC118965321

Expression Profile