RNA id: XM_036983531.1


Basic Information

Item Value
RNA id XM_036983531.1
length 4154
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC110527795
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68142952 ~ 68152016 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGAGTTTGGGTAGCAAGCCAAGCATTCTACCCACAAGGACTCATTATATTGGGCTGGACAATGCCTACATGTTACCATATGTTCAAGGGAAGACCAGGGCAGCTTGGCTCAAAGTAAATTTTTGACGCCTATGTATAAATACCCTGACTATTGGAAAATCATTGAGcaacacattcaaacacacaggTGCAGAGAGCTGCCCTGGGCTTTATGAATTCACAGATCTAAAGTGTCCAAGGTTATCCAGTAAAATACATCAAATTATATCACCAAATACACCTTACTAGGCTGATTCTATAATAAATCTATACAAGGAAACGAGTCTTGTTCCCAGAAAAGTCAGAGGTCGCTTGGACACATGACACATCTCTGGGCCTCTCCCCATAACCATGGCACTGGGAGTTGACAGGGCCTTCCCAGCATCCATCTCTCCGATGGAGTCCAAGGGCTGCAGAGGGCAATGGAAGACCCGGATTCCAAAGATTATCCGGGCGGGGTCAACCACAACGCAGCATGACAAAGacggggagagggggacaggggatAGGGACCGGGGTGGTCCCAGAAAGAGTGTTACCATGGCACCCACCTCCAGGTATATGAGTGACAGGAGGCAGTACTCTATGAGGAAACCGCTGGTCACCACCACAGAGCAGCAGACCTCCATCCTCAAGAAATCCTACCTACAGGAGCGCCCAGAAAAAGAGCGACAGGGGGAAGGTAGCAGTAATGAAGCACACCATCATGGCGAGTTTGACTTCCAGACCCGATGGGCTGAACAGAAGTTCCCAGACAACTTCAACCCCTCTCAGGCCAACATCTCAACCTGCTCAGCCTCCAGAGAGGACTTTAGCACCTCCCTAGGGGTGTCAGACCTCAGGACGGGTCTGTCACATGAAGAACCCACCTTCAGCTCATCGTATCTTGGCAGCAGGCCTGGCCGACGCAGCCTCTCCAGCCCACCCCTGGAGGTCCATACTTTCTCTACTCCACTCAACTCCAAGTGGACCTCCACTCTGCTATCCCCCCTCTCGCCCTCCTACACCCCCCCGTCGCGCCCGTccagacagagatggacagagcGGAAATTGGATGCAGGTGAAGTTTGTCAATCAcgtggaggaggaagggaaatGTATCTAAATGTAGGCCCTTCAGTGGGCTACTCCAAGGGCCACTCAAACCCTGTGCTCCACACCATGTCCCCCCACCAGGCCAACTACTGGGCCTGCGCCATTCCCAGCTCCCTGCCCCCCTCCCCAGACCGACGCTCTTCGAGCTGGAACCCTGATAAGGAGTACCAAGCCCTCCTGGACTACACCTACCCTCTGAGGCCAGGTAGGGTGGTCGGTGGGTGGGATACCTCCGATGCAGGGGGTGGACCTCTCATCCAGACAGACCCAAACCTCCAGGACTCAGGAATAGACCTGGACCGCCTCTGCAGCTCCACCAGCCTGTCAGCTTTGGACTTTTCCCTGACTGGCACGGCAGGGGTGGGGATGGCAAGGGAGAGGCGGATGCCGGGTATAGGTCCGAGGTCATCTGAGCTGCGTGGGCTCTCACACCCCAAGTCCTCAGATGGTCGCCTCTCCAGTAGCCCCTTATCCTCTGCGGACCCTATTGGTCTATCCGTGGAGAGTCTGGActgtagtggaggtggtggtctGGATCCTTTGCATCGTATCGAGGAAGGTCGCTACTGTCATCACGGCATCTCCTCTTCCACCACGTTCATCCGCACAACGAGTGTCCTTCCCCAGCCAGGGTGCCTCAGAGGGGGGGCTTGTGATGAGGAGTTCTGGTCTCTCCCGGAGCAGTTGGAGGAGCTCCGGGGTTTGTCCCGgcaggtcagggaggtgacggcCCAACTCAGTCAGCCTGTCACAGCCAGCTGGGAGTCCCTGGAGCGGGGGACCACCTCCGTCCAGTCCTCCATGAACCTGGCTGAGAAacaggaggcagaggaggagagaaaagaacgGGAGCAGAATGAAAAGGAAGAAAGGGAGGGTGATGAGAAGCAGAAAGAGGTGTCTATTTCTGAAGCGCTTCAATACTTTAATAAAGtctcTAAAGTGGTCCATAGTGGGGAATCCTCCCAGGCAGCCAGAAACTCTGGTTCTAGGATGGAGGGTGGGGTAGCAGGCAGGGGAGTGAGCAGGGCCAGTCTCAGAGAGGTGGAGGCCATGGTGGACCAGCTGAGTGGACTAACCCTGCCTGAGTTCCAGAGGGGGAGCCAGGGGGAGCAGGGGCACAGGGAGTCCCTCATGCAGCACATCCAGACCTTCTGTTCTAACCTGGAGGAGCTCATCCAATGGCTGTACACTGTGGTGGAGAGGATGGAGGTGCTGGCTCCGCCCTCTGTGGACATCGAGAGTGTCAAGTCGTCCCTGGCGGATTACAAGAGGTTTCAGAGAGAAGTAAATGCCCACCAGCCTCTGACCACCTCTGTTCTGCAGACTGGAGAGCTTCTCTTGGGTTGTATGACCTCCACTTCTCCCGTTCTGAAAGAGACCCTTGGTCTAATTGAGAGGCAGTCCAGGGCGTTGGAGACTCACTCAGAGCACctcttctcctctatcctctcggCCATGGACAGCCTGACCCAGCCCAGGGAGCCCTGCGGGGCAGAGGAGACCGGCGCTGGGGACACCGATAGCGTGGAGATCCAGGGGACAGCTTAGTGAAGGCTCCATGCAAGATGTGGATAGTATGTTTCTGTGGTTACATAGAGATCGGGCTATGACTATGATACATCACCGTCTCGTCTCGGGCTATCAGTTGTATTATTTATCATAAGTAATTATCCTTTTCAGTGAAGAAGAATGAGAGCAGATTGGTGGAGGAGGCTTGATGAGGTGCGGGAGCTTCTTCACTAACATTCCTTAAAGGAAATTACCTCGTTGTGTTGAAAAGAGAACCACTTGACTGTTGTTTCATTATTGTCTTAAGTGCTTTTTAAATGTATGCGTAAGGTGTGCTGAAGAAGCAAAGTATTATTTGCCTTGTGATATATGCTCAAGCAGATGTTTAGTCATTTATTTGAGTTACACAGTTATTAATAATGACCCATTGCACTCCTCTTGCAACTCTGTTACATGCATGACATTCTTTTTTAACCTATTTTGATATCCCTCTGTGGCATCTAAGTGTCTTCACTAAAGGTGCTGTGAATTTCGTACACTGGGTAGAGCACTGCAATATTTTCcagcaagtttttttttttcagggTGAACTCAACCAGTTGATTATGGCCTCAGATTGTATCATCACCTGTCTCTGGTACATAATGTTGAGCCTTCTTCCTGGATTGACAGAAGGGAAGGTCTGCATTTGTGCCGCGTTGATGTTGTATATGTAGATTGGTAATATAGGATGGTGAACCATTGTGCCCTTACAGttgtatttgaaatcatttcattGATCAGATGGCAGCTATATGCAAGATATGGCCACTGTGATAATCACCAGCCAGAGACAACAGCACAGTTTGGAGGTCCCATGTTTTTATGAGTTTGATATTTTTCGTATGCATGGGAAACCTGGATGAAAAGTGCCTAAATTCAATCATATCAAGCCTTCACGGGCAATAGTCGGCACCCGCGTGCGTACCTGATGTTTTGGCGGCGTCAAAttggtgagcagctgctcttgattGTCACAAAGCCACACCTCTCACGTTAAGATGTTCAGAATGAGAAAGTAGGTTAAATTGAAAATCATTCAACTAAATAATGAGGATTTAATTTCAAATTCCAGTgttctaaaatgtaaacaaggctgcatgggatttctcttaatgAGACTCGGTGCAGCCAAGggcaatgtccgctttaggtataacgccaggagccgcttgtggatttgacagctctaacgcagttccacctTCACTGCCGAAACGACCACTTTGCGGATGTcggctaaagcggatctgattgaatagagtGCTCAGACATAACTACAGCCTTTTTTAATGTGCAGGATGTTTTTAACTGTCTTTGTTACTGTAGTAATCAATTGGGAATGTTAACTTTTAAACACCATGGAAAACTTTGTTCATCAGACTGTTATCCTCATTCACAAAATGAACCTGGTGAAAACTACACATTGTTCCTTCTGATTAAACAAACCTTTTATCTGGCTGCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83578 lncRNA downstream 472 68138795 ~ 68142480 (-) True G75612
TU83499 lncRNA downstream 150924 67985167 ~ 67992028 (-) True G75539
TU83444 lncRNA downstream 190235 67897706 ~ 67952717 (-) True LOC110532597
TU83367 lncRNA downstream 391123 67751467 ~ 67751829 (-) True G75426
TU83354 lncRNA downstream 417152 67723624 ~ 67725800 (-) True G75413
TU83635 lncRNA upstream 54709 68205844 ~ 68206060 (-) True G75664
TU83636 lncRNA upstream 55681 68206816 ~ 68207132 (-) True G75665
TU83746 lncRNA upstream 81097 68232232 ~ 68285627 (-) True G75764
TU83765 lncRNA upstream 106470 68257605 ~ 68280269 (-) True G75782
TU83845 lncRNA upstream 219603 68370738 ~ 68370943 (-) True G75846
XM_036983491.1 mRNA downstream 25263 68104128 ~ 68117689 (-) True LOC110527775
XM_036983494.1 mRNA downstream 25527 68104128 ~ 68117425 (-) False LOC110527775
XM_021609269.2 mRNA downstream 56836 68078150 ~ 68086116 (-) True LOC110527765
XM_036983485.1 mRNA downstream 57661 68078150 ~ 68085291 (-) False LOC110527765
XM_036983445.1 mRNA downstream 65147 67961768 ~ 68077805 (-) False LOC110527734
XM_021609351.2 mRNA upstream 6765 68157900 ~ 68162024 (-) False sdhaf4
XM_021609364.2 mRNA upstream 11697 68162832 ~ 68168638 (-) False tlx1
XM_021609374.2 mRNA upstream 11697 68162832 ~ 68168957 (-) True tlx1
XM_021609385.2 mRNA upstream 64864 68215999 ~ 68218542 (-) True lbx1a
NM_001124747.1 mRNA upstream 250447 68401582 ~ 68404726 (-) True cyp17a1
TU83338 other downstream 461222 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other downstream 461222 67669589 ~ 67681730 (-) True LOC110527687
TU83185 other downstream 754908 67386509 ~ 67388044 (-) True LOC110527584
TU82368 other downstream 1132365 66994682 ~ 67010587 (-) True LOC110527436
TU82292 other downstream 1320136 66818844 ~ 66822816 (-) False tjap1
TU83574 other upstream 6826 68157961 ~ 68162002 (-) True sdhaf4
TU83653 other upstream 59045 68210180 ~ 68211706 (-) True G75682
TU84158 other upstream 424458 68575593 ~ 68577744 (-) False LOC110527951
TU84152 other upstream 488241 68639376 ~ 68690229 (-) True LOC110527951
TU86507 other upstream 1931705 70082840 ~ 70085385 (-) False LOC118965321

Expression Profile