RNA id: NM_001124747.1


Basic Information

Item Value
RNA id NM_001124747.1
length 2286
RNA type mRNA
GC content 0.50
exon number 7
gene id cyp17a1
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68401582 ~ 68404726 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGACACTCTGATAACGACGCCAGCCCCTCTCGGCCCAACATACAGCATGGCGTGGtttttgtgcatgtgtgtattcTCTGTGGTCGGGCTGGGTCTACTGCTCTTGCAGGTGAAACTTCGAAGGTCCCTGGAGACCAGAGGGGGCCCTCCGAGCCTGCCCGTGTTCCCACTCATCGGGAGCCTGTTGAGCCTGCGAAGCAATCAGGCACCGCATGTCCTCTTCCAGAAGCTGCAGCAGAAGTATGGACATACCTATTCTCTAATGATGGGCCCACACACAGTCATCCTTGTCAACCACCACCAGCACGCCAAAGAGGTCCTCCTTAAAAAGGGGAAAATCTTTGCAGGAAGACCCAGAACAGTAACCACAGACCTGTTGACGAGGGACGGTAAAGATATTGCCTTTGCAGACTACGGTGCCACTTGGAGATTTCATCGTAAAACAGTGCATGGAGCCTTGTGTATGTTTGGTGAGGGCTCTGCCTCCATCGAGAAGATTAtctgtaGGGAAGCTCTCTCCCTGTGTGACACTCTGCGAGAGTCAGGAAGTGCATCGTTGGACTTGTCCCCAGAGCTGACAAGAGCTGTCACCAACGTGGTCTGCTCTCTCTGCTTCAGCTCCTCCTATTGCCGCGGCGACCCCGAGTTTGAGGCCATGCTGCAGTTCAGCCAGGGCATCGTGGATACGGTCGCTAAGGACAGTCTGGTGGACATCTTCCCATGGCTACAGGTCTTCCCCAACGCAGACCTGCGTCTCCTAAAGCAGTGTGTGTCAATCAGAGACAAGCTGCTTCAGAAAAAATACGAGGAACACAAGTCGGACTACAGCGATCATGAACAGAGAGACCTGCTGGACGCCCTGCTAAGGGCCAAACGCAGTGCTGAGAACAACAACACTGCCGAGATCACCATGGAGACCGTGGGCCTTAGTGAAGACCACCTGCTCATGACCGTGGGTGACATATTTGGAGCCGGAGTGGAAACCACGTCAACAGTCCTAAAATGGGCAATTGCCTACCTCATCCACCATCCACAGGTACAACAGCGAATTCAGGAGGAACTGGACAGTGTGGTGGGGGGAGACAGAACCCCCCAGCTCAGTGACAGGGGGAGCCTGCCCTACCTGGAGGCCACCATTAGAGAGGTGCTACGCATCCGGCCTGTTGCCCCTCTACTCATCCCCCATGTAGCCCAAACAgacaccagTATTGGCAAGTTCACTGTTAGGAAAGGTGCTCGCATCATCATCAACTTGTGGTCCCTGCATCACGATGAGAAGGAGTGGAAGAACCCAGAGATGTTTGACCCTGGTCGCTTCCTGAACGAGGAGGGGACAGGTCTGTGCATCCCCTCGCCCAGCTACTTGCCGTTTGGGGCAGGGGTGAGAGTGTGTCTGGGAGAGGCGCTGGCTAAGATGGagatcttcctcttcctctcctggaTCCTTCAGCGTTTAACTATGACCGTGTCCCCGGGCCAGCCACTGCCCAGCCTGGAAGGAAAGTTTGGGGTAGTCCTCCAGCCGGTCAAATACAAGGTCAATGCCACACCAAGAGCAGGCTGGGAGAAGAGCCATCTCCAGACCtcttagaccccccccccctccacccttaACGAATGACATGCATGGGTGTTAATGTTTAAACACTAATAGTGGTGCATTTGAATTGACCTTGGAATCTCATAGCTCCAGTTGGTCAAGTTGTGAAGATGATATAAATGCGTTCTAGTGCTTTTGAGGTTGGTACAACTCTACAATGAATTAGATTTTTAGCTAGAGCGCTAAGCAAGATAGTGTTGCTAATAATAAGTTGGTTAACTAGCTGACAATGTGTCAAACCATAGACTGTATTGGTCAAAGTAGCTTCTTTATCCACATAGCTAAAGGCATTGTTTTACCATCTTTTGGTCGCAAAGGTGACAGGTCATTGATGAAACGTCAGAACTCGATGATACTCAGGTATCATCATTCTGGCCTGAGTTTTTCACTTGGAACTTGGAGGGCATTGACTTGGAGGGCATTGTACTGGCTATTTTGGAGTCGGGAACTCGTATTTCCACATTTCAGAGAGCTCTCGAATGCACCATAGAACATGGAAACAGGCGTGAACTAAGGTTGTGATACATTACGCAGAGACAGCCCTTGTAATGACTGCTATTTTTCACTGTATTGATGTTGAACAATGCTGTATATTTTTTTGCCTTAATGAGCTGTACTAATGTATTCCGTTACTACTGTTTTACATAATACTGTCTTTCAGTGATGAATAAAAAATCATATGGCA

Function

GO:

id name namespace
GO:0006694 steroid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0004508 steroid 17-alpha-monooxygenase activity molecular_function
GO:0047442 17-alpha-hydroxyprogesterone aldolase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00512 CYP17A; steroid 17alpha-monooxygenase / 17alpha-hydroxyprogesterone deacetylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83854 lncRNA downstream 21399 68379943 ~ 68380183 (-) True G75854
TU83852 lncRNA downstream 23827 68377255 ~ 68377755 (-) True G75852
TU83847 lncRNA downstream 28679 68372442 ~ 68372903 (-) True G75848
TU83845 lncRNA downstream 30639 68370738 ~ 68370943 (-) True G75846
TU83746 lncRNA downstream 115955 68232232 ~ 68285627 (-) True G75764
TU83921 lncRNA upstream 30839 68435565 ~ 68437455 (-) True G75916
TU84165 lncRNA upstream 148491 68553217 ~ 68553432 (-) True G76134
TU84161 lncRNA upstream 164208 68568934 ~ 68569199 (-) True LOC110527939
TU84162 lncRNA upstream 174106 68578832 ~ 68579190 (-) False LOC110527951
TU84392 lncRNA upstream 296368 68701094 ~ 68701345 (-) True G76341
XM_021609385.2 mRNA downstream 183040 68215999 ~ 68218542 (-) True lbx1a
XM_021609374.2 mRNA downstream 232625 68162832 ~ 68168957 (-) True tlx1
XM_021609364.2 mRNA downstream 232944 68162832 ~ 68168638 (-) False tlx1
XM_021609351.2 mRNA downstream 239558 68157900 ~ 68162024 (-) False sdhaf4
XM_021609322.2 mRNA downstream 249566 68142952 ~ 68152016 (-) True LOC110527795
XM_021609455.2 mRNA upstream 4787 68409513 ~ 68433891 (-) False nt5c2a
XM_021609462.2 mRNA upstream 4787 68409513 ~ 68433891 (-) False nt5c2a
XM_036983613.1 mRNA upstream 4787 68409513 ~ 68433891 (-) True nt5c2a
XM_021609486.2 mRNA upstream 33347 68438073 ~ 68444855 (-) True pcgf6
XM_021609511.2 mRNA upstream 44003 68448729 ~ 68460365 (-) False LOC110527905
TU83653 other downstream 189876 68210180 ~ 68211706 (-) True G75682
TU83574 other downstream 239580 68157961 ~ 68162002 (-) True sdhaf4
TU83338 other downstream 719852 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other downstream 719852 67669589 ~ 67681730 (-) True LOC110527687
TU83185 other downstream 1013538 67386509 ~ 67388044 (-) True LOC110527584
TU84158 other upstream 170867 68575593 ~ 68577744 (-) False LOC110527951
TU84152 other upstream 234650 68639376 ~ 68690229 (-) True LOC110527951
TU86507 other upstream 1678114 70082840 ~ 70085385 (-) False LOC118965321
TU86508 other upstream 1678114 70082840 ~ 70085385 (-) False LOC118965321
TU86509 other upstream 1678114 70082840 ~ 70085009 (-) False LOC118965321

Expression Profile