RNA id: XM_036983666.1



Basic Information


Item Value
RNA id XM_036983666.1
length 869
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC118965305
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68486914 ~ 68495090 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCGGTTAGGCTACGTTTCAAAGATAATGAAAGTGAAAGAGTATTGTCTAACGTAGGCTAGATAGGTTAACCTACACGACATATTGTTCTGCAGTCCCTATACGTTTTCTTCAAGcATGGATAAATTGAGAAAGATAAGGATAGTTCTGACAGAAATATTGTCAGCGGACGCCAGTTACATCCTTCAGCATGTACACCAGGAGGACCTGGTGACTCCACGCGAATACAGGAACCTGCACAATGACAGTAAATTACATCCAGAAGGTTCCATCGTCGATCTGCTGGATTCACTCCTAACGAAAGGAGGAGATGAGAAATGCACTAGATTCTTGACCCTGTTGCAGCAGCCAGTCATCAGATCAACCTACTACAAACTGGGAGAAATCAAACACATCGACATAGCTCCGGCACCCAGTAGCCCAGCACCCCCAGACGCTGTCCCAACCTCTGCCTCCTCCACAGTCCACACCCATCGCCCAACCACATCAGGTTCAAAAATTCCAACTACTCCTGTGAAAAAGAATAACCGGAGAAGGACCACTGCGTGTGGAACCATCACAGACGTTTCTGAAGTGAAGATGGGGAAGGCGGGGGGGAAATACTACCAAGCTGTTCTAAACCAAGAGGATGGGCCCATGGTCATTCTCATTTTGGATCTAGAGAAACGAAATATCTTTCTAGGAGCAGAGAAGAGAAGGTCTTCTGTAAAGTTGAAGAGAATCTCATTCGAGAAACTTGGAATGAACAAGTACCAAGAGGGGATAAAGTTCACAAACAAATCCGAATTGACTTACACAAGAGCCAAAAACACTATAAAGATGGAACCCACTGCTGATGAAAAagaataaacacatttttttttaactagaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83896 lncRNA upstream 26527 68459323 ~ 68460387 (+) True G75893
TU83891 lncRNA upstream 41262 68445398 ~ 68445652 (+) True G75888
TU83727 lncRNA upstream 108580 68377717 ~ 68378334 (+) True G75745
TU83673 lncRNA upstream 201288 68232213 ~ 68285626 (+) True G75702
TU83092 lncRNA upstream 384258 68099714 ~ 68102656 (+) True G75167
TU83958 lncRNA downstream 1511 68496601 ~ 68497921 (+) True G75948
TU84030 lncRNA downstream 59523 68554613 ~ 68554908 (+) True G76016
TU84039 lncRNA downstream 75758 68570848 ~ 68571060 (+) True G76025
TU84043 lncRNA downstream 78546 68573636 ~ 68574210 (+) True G76029
TU84042 lncRNA downstream 79629 68574719 ~ 68575049 (+) True G76028
XR_005053624.1 mRNA upstream 32021 68454837 ~ 68454893 (+) True LOC118966747
XM_021609473.2 mRNA upstream 49375 68434566 ~ 68437539 (+) True inaa
XM_021599833.2 mRNA upstream 78626 68405497 ~ 68408288 (+) True borcs7
XM_036983599.1 mRNA upstream 90513 68339037 ~ 68396401 (+) True fbxw4
XM_036983601.1 mRNA upstream 118917 68339037 ~ 68367997 (+) False fbxw4
XM_021609567.2 mRNA downstream 24704 68519794 ~ 68548397 (+) True LOC110527930
XR_002474182.2 mRNA downstream 150682 68645772 ~ 68647556 (+) True LOC110528033
XM_021609836.2 mRNA downstream 267703 68762793 ~ 68769165 (+) True LOC110528049
XM_021609848.2 mRNA downstream 357348 68852438 ~ 68874903 (+) True LOC110528057
XM_021609953.2 mRNA downstream 724632 69219722 ~ 69243901 (+) True LOC110528130
TU83729 other upstream 111985 68374505 ~ 68374929 (+) True G75747
TU81938 other upstream 1701945 66784335 ~ 66784969 (+) True G74139
TU81852 other upstream 1727930 66756207 ~ 66758984 (+) True G74067
TU81346 other upstream 2062833 66420495 ~ 66424081 (+) True LOC118965274
TU81252 other upstream 2198445 66287679 ~ 66288469 (+) True G73515
TU86384 other downstream 2076575 70571665 ~ 70654961 (+) True G78121
TU87354 other downstream 2541380 71036470 ~ 71076102 (+) True ccdc85a
TU90667 other downstream 5056526 73551616 ~ 73571737 (+) False G82111
TU90669 other downstream 5075976 73571066 ~ 73571737 (+) True G82111
TU92487 other downstream 6414135 74909225 ~ 74909806 (+) True G83836

Expression Profile